mRNA_H-elongata_contig87610.16295.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87610.16295.1
Unique NamemRNA_H-elongata_contig87610.16295.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87610.16295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87610contigH-elongata_contig87610:2253..2576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931277.3452384-CDS-H-elongata_contig87610:2252..25761622931277.3452384-CDS-H-elongata_contig87610:2252..2576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87610 2253..2576 -
1691679770.2159286-CDS-H-elongata_contig87610:2252..25761691679770.2159286-CDS-H-elongata_contig87610:2252..2576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87610 2253..2576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87610.16295.1prot_H-elongata_contig87610.16295.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87610 2253..2576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87610.16295.1

>prot_H-elongata_contig87610.16295.1 ID=prot_H-elongata_contig87610.16295.1|Name=mRNA_H-elongata_contig87610.16295.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
ENFVLDHLKAWEILLEAIDDVLFKERLLACSTLEQAWYIITKWGLPKREA
ENDLLLRQLDTAEMANSEDLKFFFTRVDKLFNTLKTVGAKKTEKEDVRII
FRNFPDV*
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mRNA from alignment at H-elongata_contig87610:2253..2576-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87610.16295.1 ID=mRNA_H-elongata_contig87610.16295.1|Name=mRNA_H-elongata_contig87610.16295.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig87610:2253..2576- (Himanthalia elongata Himel1 dioecious)
GAAAATTTTGTATTAGACCACTTGAAAGCATGGGAAATTCTGCTGGAGGC
AATAGACGATGTCCTATTTAAAGAGAGGTTGCTCGCATGTTCCACGCTTG
AGCAGGCTTGGTATATCATAACAAAATGGGGTCTACCGAAACGTGAGGCT
GAAAATGATTTGCTGCTACGCCAACTTGATACCGCTGAGATGGCAAATAG
CGAAGATCTCAAGTTTTTCTTCACCCGTGTAGATAAGTTGTTCAACACTC
TGAAGACTGTGGGAGCCAAAAAGACGGAAAAGGAAGATGTTCGTATAATT
TTCCGCAATTTTCCCGACGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig87610:2253..2576-

>mRNA_H-elongata_contig87610.16295.1 ID=mRNA_H-elongata_contig87610.16295.1|Name=mRNA_H-elongata_contig87610.16295.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig87610:2253..2576- (Himanthalia elongata Himel1 dioecious)
GAAAATTTTGTATTAGACCACTTGAAAGCATGGGAAATTCTGCTGGAGGC
AATAGACGATGTCCTATTTAAAGAGAGGTTGCTCGCATGTTCCACGCTTG
AGCAGGCTTGGTATATCATAACAAAATGGGGTCTACCGAAACGTGAGGCT
GAAAATGATTTGCTGCTACGCCAACTTGATACCGCTGAGATGGCAAATAG
CGAAGATCTCAAGTTTTTCTTCACCCGTGTAGATAAGTTGTTCAACACTC
TGAAGACTGTGGGAGCCAAAAAGACGGAAAAGGAAGATGTTCGTATAATT
TTCCGCAATTTTCCCGACGTATGAGAAAATTTTGTATTAGACCACTTGAA
AGCATGGGAAATTCTGCTGGAGGCAATAGACGATGTCCTATTTAAAGAGA
GGTTGCTCGCATGTTCCACGCTTGAGCAGGCTTGGTATATCATAACAAAA
TGGGGTCTACCGAAACGTGAGGCTGAAAATGATTTGCTGCTACGCCAACT
TGATACCGCTGAGATGGCAAATAGCGAAGATCTCAAGTTTTTCTTCACCC
GTGTAGATAAGTTGTTCAACACTCTGAAGACTGTGGGAGCCAAAAAGACG
GAAAAGGAAGATGTTCGTATAATTTTCCGCAATTTTCCCGACGTATGA
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