mRNA_H-elongata_contig8761.16294.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8761.16294.1 vs. uniprot
Match: D8LGQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGQ9_ECTSI) HSP 1 Score: 372 bits (955), Expect = 4.550e-124 Identity = 184/248 (74.19%), Postives = 210/248 (84.68%), Query Frame = 1
Query: 835 GPTSLVKRLWRQLVVTCTAFGVRCTETRRFERALELLKRAGVLLSRQVLDKRETMELRAFISDAYGLYYLKRGKPTAALDYVQKAMRTHARLEDWGHLAKCHLHAAVVLSKLSRHDEALQYLGQVLSMVQEGKLDVGGNSPQKLCLVAICYHNVAVEHLIQHHVGEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAELARTIPTPGEDKGS-----ERGKQGDSAVTMAQRGMLDRLVEELFS 1563
GP+ LVK+LWRQLV TC AFGVR TE +RFERALELLKRAG+LLSRQVLDK T+ELRAF++DAYGLY+L+RGK +AALDY+QKAM+THAR+ DWGH+AKCHLH+++VLSKL+RHDEAL+ LGQVL+MVQEGKLDVGGNSPQKLCLVAICYHN+AVE LI H GEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAEL+R++ T G D RG G Q+ +L RL EELFS
Sbjct: 4 GPSQLVKKLWRQLVATCIAFGVRSTENQRFERALELLKRAGILLSRQVLDKHSTLELRAFVNDAYGLYFLRRGKSSAALDYLQKAMKTHARMLDWGHVAKCHLHSSMVLSKLNRHDEALRCLGQVLAMVQEGKLDVGGNSPQKLCLVAICYHNMAVEQLILRHAGEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAELSRSLSTTGGDGAGGNVAQRRGSGGYGEGEREQKDILQRLTEELFS 251
BLAST of mRNA_H-elongata_contig8761.16294.1 vs. uniprot
Match: A0A6H5JBJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ8_9PHAE) HSP 1 Score: 304 bits (779), Expect = 3.630e-89 Identity = 191/386 (49.48%), Postives = 234/386 (60.62%), Query Frame = 1
Query: 1 RVGGSSDDSAESPVKIDSEWENTLAKNILSLYQAKLKAELDEKKGALEEGPERKPCGYLTIAEEEELL--------WERQLQRRPTNRGDGDKTTHSTNKGVEPWGGRTVSKKRRGMSPCGGMCLP-------PPSCFPRRPATTTVLQKARVRAITTAPTLSGGDRCSPSTPSVYVAARNGLRRRRHGTAARVAESAGSTATTRLGRRGFKGNRTIMVPTRGGNEVVVVVPKRPTPVWFAGSGAIQAEWSALPGGARIVRDLEGLEEQGS-YHKYVALVEGLMVAHLRADDQRGPTSLVKRLWRQLVVTCTAFGVRCTETRRFERALELLKRAGVLLSRQVLDKRETMELRAFISDAYGLYYLKRGKPTAALDYVQKAMRTHARL 1110
R GG D + +P KID+EWEN +AKNILSLYQ KLKA+LD K A EE RK GYL E R + G T+ +N G GG + SP P P + V + A R + + S G R P P AA G + G + + + G+ GR GF+G++ I VPTRGG E VV+VPKRP P+WFAGSGAIQAEWSALPGGAR+V ++ + Y KYVA+VEGL+ AHLRADDQ+GP+ LV++LWRQLV TC AFGVR TE +RFERALELLKRAG+LLSRQVLDK T+ELRAF++DAYGLY+L+RGK +AALDY+QKAM+THARL
Sbjct: 653 RTGG--DGNNGNPAKIDTEWENEIAKNILSLYQTKLKADLDGKTNAKEEDLVRKQRGYLAAEEXXXYALXXXXXXXXXXXXSHRASTAAPGPSTSRRSNTGG--CGGAPTTPGTAAASPVNTTPTPGRERATGDPXXXXXXXSRRPVTRAANPREVVVSRDYSLG-RHPPPIP----AATAGTPGAKGGASVGGSHATGAAKAVGGGRGGFRGSKAISVPTRGGGEAVVMVPKRPRPIWFAGSGAIQAEWSALPGGARVVCGVKFVSAATHWYAKYVAVVEGLLTAHLRADDQQGPSQLVQKLWRQLVATCIAFGVRSTENQRFERALELLKRAGILLSRQVLDKHSTLELRAFVNDAYGLYFLRRGKSSAALDYLQKAMKTHARL 1029
BLAST of mRNA_H-elongata_contig8761.16294.1 vs. uniprot
Match: A0A7S1U6F4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6F4_9STRA) HSP 1 Score: 289 bits (740), Expect = 1.690e-84 Identity = 154/302 (50.99%), Postives = 201/302 (66.56%), Query Frame = 1
Query: 637 VVVVPKRPTPVWFAGSGAIQAEWSALPGGARIVRDLEGLEEQGSYHKYVALVEGLMVAH----------LRAD--------------DQRGPTSLVKRLWRQLVVTCTAFGVRCTE--TRRFERALELLKRAGVLLSRQV-LDKRETMELRAFISDAYGLYYLKRGKPTAALDYVQKAMRTHARLEDWGHLAKCHLHAAVVLSKLSRHDEALQYLGQVLSMVQEGKLDVGGNSPQKLCLVAICYHNVAVEHLIQHHVGEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAELA--RTI 1455
V+VVP++ P+WF G+GAI EWS+LP G R L+ LEE+ Y Y+A VE + + L+AD D L +RLWRQ+VV+ AFGVR E R F ALE+LK+A L + L +R+ ELRAF++DAY YY +RGK AAL+Y +KAMRTHA ++DW H A C LH VLS+L+RHDEA++ LGQ+L++V++ KLD+GG +PQKLCLVA+ YHN+AVE L HV EAC+SSQNARRLARLCLSYSNR++ F+ TH+ ALA+LA RT+
Sbjct: 575 VIVVPRQSQPIWFKGTGAIAPEWSSLPDGDDAARHLQRLEEERQYAAYIATVEAFLNGYQRSGALEQEVLQADHSLVSSLTTSFDAVDDGEQNELFRRLWRQMVVSAIAFGVRACEGADRNFVLALEMLKKAEELAGNSLALSRRDMSELRAFVADAYAYYYSQRGKNHAALEYAEKAMRTHAHMKDWTHTASCQLHIGAVLSRLNRHDEAIRCLGQILTLVEDRKLDIGGLAPQKLCLVAVTYHNIAVEQLALRHVSEACISSQNARRLARLCLSYSNRFISQFDRTHRAALADLATLRTV 876
BLAST of mRNA_H-elongata_contig8761.16294.1 vs. uniprot
Match: A0A835Z279_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z279_9STRA) HSP 1 Score: 236 bits (603), Expect = 4.920e-71 Identity = 126/252 (50.00%), Postives = 162/252 (64.29%), Query Frame = 1
Query: 814 LRADDQRGPTSLVKRLWRQLVVTCTAFGVRCTETRRFERALELLKRAGVLLSRQVLDKRETMELRAFISDAYGLYYLKRGKPTAALDYVQKAMRTHARLEDWGHLAKCHLHAAVVLSKLSRHDEALQYLGQVLSMVQEGKLDVGGNSP--QKLCLVAICYHNVAVEHLIQHHVGEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAELARTIPTPGEDKGSERGKQGDSAVTMAQRGMLDRLVEELFS 1563
L D ++ P L RLWRQL V+ AFGVRC E ++F + L+LL+ A R LD+R EL A+++D+Y YYL+R K AAL+Y Q+A++ H RL +W H AKC LH +++LS L RHDE+L L VL+MV+ G GG+S Q+LC+VA+CYHN+A E L+ EAC SSQNAR+LARLCLSYSNRWLH FEGTHKLAL+ LA + G G+ AQ L +L EEL S
Sbjct: 21 LPTDLKKRPQELTHRLWRQLAVSAIAFGVRCAERKKFAQGLDLLRTAERFSQRADLDRRTNNELAAYVADSYSFYYLRRNKAAAALEYSQRALKAHQRLRNWPHFAKCLLHESMILSHLGRHDESLASLAGVLAMVRRGS---GGSSSNAQQLCMVAVCYHNIAAEQLMAGRFAEACASSQNARKLARLCLSYSNRWLHHFEGTHKLALSGLAANMAESDAAAGRFHGE--------AQAEFLLKLSEELCS 261
BLAST of mRNA_H-elongata_contig8761.16294.1 vs. uniprot
Match: A0A6H5J7C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C3_9PHAE) HSP 1 Score: 233 bits (593), Expect = 3.200e-70 Identity = 115/158 (72.78%), Postives = 129/158 (81.65%), Query Frame = 1
Query: 1105 RLEDWGHLAKCHLHAAVVLSKLSRHDEALQYLGQVLSMVQEGKLDVGGNSPQKLCLVAICYHNVAVEHLIQHHVGEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAELARTIPTPGEDK-----GSERGKQGDSAVTMAQRGMLDRLVEELFS 1563
R +DWGH+AKCHLH+++VLSKL+RHDEAL+ LGQVL+MVQEGKLDVGGNSPQKLCLVAICYHN+AVE LI H GEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAEL+R++ T G D G RG G Q+ +L RL EELFS
Sbjct: 57 RTQDWGHVAKCHLHSSMVLSKLNRHDEALRCLGQVLAMVQEGKLDVGGNSPQKLCLVAICYHNMAVEQLILRHAGEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAELSRSLSTTGGDGAGGNVGQRRGSGGCGEGEREQKDILQRLTEELFS 214
BLAST of mRNA_H-elongata_contig8761.16294.1 vs. uniprot
Match: A0A1V9ZHT4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHT4_9STRA) HSP 1 Score: 243 bits (620), Expect = 9.880e-69 Identity = 131/293 (44.71%), Postives = 177/293 (60.41%), Query Frame = 1
Query: 631 EVVVVVPKRPTPVWFAGSGAIQAEWSALPGGA--------------------RIVRDLEGLEEQGSYHKYVALVEGLMVAHLRADDQRGPTSLVKRLWRQLVVTCTAFGVRCTETRRFERALELLKRAGVLLSRQ-VLDKRETMELRAFISDAYGLYYLKRGKPTAALDYVQKAMRTHARLEDWGHLAKCHLHAAVVLSKLSRHDEALQYLGQVLSMVQEGKL-DVGGNSPQKLCLVAICYHNVAVEHLIQHHVGEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAEL 1443
+V++ +PK P P+WFAG+G + A W AL G ++ +L LE+ G++ KY+A+VE L++A LR R + +LW+QL++TC AF RC + ++F ALEL+K+ LL +L EL AFISD Y YY RGK A L YV KA THA+L +W HLAKC LH A +LSKL RH A++ L ++L +V+ +L D GG S QKLCLVA+CY+N+A+E L + A +SQNARRLARLCL YSNRWL E THK + +
Sbjct: 385 KVLLCMPKIPKPIWFAGTGVVLATWCALAGPEIDTKVPDRSILAGEPVLCRHKLCDELRQLEQAGAHEKYIAVVETLLMARLRTKF-RALEEMDMKLWKQLIITCNAFASRCIDVKKFAVALELIKKTDSLLDDSTLLLGAARAELVAFISDTYAYYYYSRGKANAGLKYVSKAHTTHAKLGEWSHLAKCKLHMAALLSKLERHPAAVECLHEILGLVESAQLEDAGGASAQKLCLVAVCYNNLALEQLHVRDIDRAATASQNARRLARLCLGYSNRWLVQLEATHKAVVRAM 676
BLAST of mRNA_H-elongata_contig8761.16294.1 vs. uniprot
Match: A0A225X1R5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X1R5_9STRA) HSP 1 Score: 226 bits (577), Expect = 1.940e-66 Identity = 126/307 (41.04%), Postives = 173/307 (56.35%), Query Frame = 1
Query: 646 VPKRPTPVWFAGSGAIQAEWSALPGGA-------------------------RIVRDLEGLEEQGSYHKYVALVEGLMVAHLRADDQRGPTSLVKRLWRQLVVTCTAFGVRCTETRRFERALELLKRAGVLLSRQVL-DKRETMELRAFISDAYGLYYLKRGKPTAALDYVQKAMRTHARLEDWGHLAKCHLHAAVVLSKLSRHDEALQYLGQVLSMVQEGKLDV----GGNSPQKLCLVAICYHNVAVEHLIQHHVGEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAELARTIPTPGEDK 1476
+PK P P+WFAG+GA++A W AL G R+ ++ LE + + + + +E L+VA +RA RG L +LW+QLVVTC AF RC + ++F L+L+K+A L+ +L D MEL A++ D Y YY +R KP A L Y+ KA H+R W HLAKC LH A +LS RH EA++Y+G +L M++E KL+ GG S QKLCL A+CY+N+AVE L A +SS NA+RLA+LCLSYSNRWL F+ T +A + DK
Sbjct: 1 MPKVPRPIWFAGTGAVKAVWCALADGFSNLRPQNTATGRLVSNTATVSMCDHRLCEEVRQLEAKKKFAQCITTLESLLVALVRA---RGAGELETKLWKQLVVTCNAFASRCIDYQKFSAGLQLMKQAEHLIDNSILVDSTMRMELLAYLYDTYAHYYYRRRKPHAGLQYIMKAHEIHSRQSSWSHLAKCRLHIANLLSFQIRHVEAMKYMGSILEMIEENKLEENSEGGGGSAQKLCLAAVCYNNLAVEQLHMREFEAANVSSANAQRLAKLCLSYSNRWLSQFQATSDCIALAIATLMEDTNADK 304
BLAST of mRNA_H-elongata_contig8761.16294.1 vs. uniprot
Match: G4YJM8_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YJM8_PHYSP) HSP 1 Score: 226 bits (575), Expect = 4.860e-66 Identity = 125/310 (40.32%), Postives = 173/310 (55.81%), Query Frame = 1
Query: 646 VPKRPTPVWFAGSGAIQAEWSALPGGA-------------------------RIVRDLEGLEEQGSYHKYVALVEGLMVAHLRADDQRGPTSLVKRLWRQLVVTCTAFGVRCTETRRFERALELLKRAGVLLSRQVL-DKRETMELRAFISDAYGLYYLKRGKPTAALDYVQKAMRTHARLEDWGHLAKCHLHAAVVLSKLSRHDEALQYLGQVLSMVQEGKLD------VGGNSPQKLCLVAICYHNVAVEHLIQHHVGEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAELARTIPTPGEDKG 1479
+PK P P+WFAG+GA++A W AL G R+ ++ LE + + + + +E L+VA +RA RG L +LW+QLVVTC AF RC + ++F L+L+K+A L+ +L D MEL A++ D Y YY KR KP A L Y+ KA H+R W HLAKC LH A +LS +H EA++Y+ +L M+++ KL+ VGG S QKLCL A+CY+N+AVE L A +SS N +RLA+LCLSYSNRWL F+ T +A + DKG
Sbjct: 1 MPKVPRPIWFAGTGAVKAVWCALAEGFSQLRPQHAASGHSGTNSAVVSVCDHRLCEEVRQLETKKKFAQCITTLESLLVALVRA---RGVDELETKLWKQLVVTCNAFASRCIDYKKFPAGLQLMKQAEHLIDNSILVDSTMRMELLAYLYDTYAHYYYKRRKPHAGLQYILKAHEIHSRQSSWSHLAKCRLHIANLLSFQIKHAEAMKYMASILEMIEDNKLEETAEGGVGGGSAQKLCLAAVCYNNLAVEQLHMREFEAASVSSANTQRLAKLCLSYSNRWLSQFQATSDCVALAIATLMEDTNADKG 307
BLAST of mRNA_H-elongata_contig8761.16294.1 vs. uniprot
Match: A0A8J2SX48_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX48_9STRA) HSP 1 Score: 233 bits (594), Expect = 7.310e-66 Identity = 132/290 (45.52%), Postives = 177/290 (61.03%), Query Frame = 1
Query: 664 PVWFAGSGAIQAEWSALPGGARIVRDLEGLEEQGSYHKYVALVEGLMVAHLR--ADDQRGPTSLVKRLWRQLVVTCTAFGVRCTETRRFERALELLKRA---GVLLSRQVLDKRETMELRAFISDAYGLYYLKRGKPTAALDYVQKAMRTHARLEDWGHLAKCHLHAAVVLSKLSRHDEALQYLGQVLSMVQEGKLDVGGNSPQKLCLVAICYHNVAVEHLIQHHVGEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAELARTIPTPGEDKG--SERGKQGDSAV 1512
PVW+ G+G +Q+EW LP G + DL+ L+E G Y +Y++ VE + A++R D + L RLWRQL VT F R + RR A++LL RA V + V K + EL+AF+ DAY YY RGK AAL V KAM+ H + E+ H+AKCH+H+A +LS+L R EA++ LGQVL +V+ KLD+ G+ P +CLVAI +HN+AVE H EA +S+QNARRLARLCLSYSNRWL +FE TH+ L + KG +E KQG +
Sbjct: 245 PVWYLGTGPVQSEWDCLPEGDDMRLDLQALDEAGKYVEYLSCVEASLNAYVRRRCDGEGEQGRLFGRLWRQLCVTACVFVSRAVDQRRPALAMKLLDRAKQYSVSSAAHVQVKADARELQAFVEDAYAYYYYCRGKYHAALHCVVKAMKIHVKQEEHAHVAKCHVHSACILSRLRRRPEAVRCLGQVLFLVESEKLDMCGDQPHLICLVAIAHHNMAVEQQGLGHFEEAVVSAQNARRLARLCLSYSNRWLEAFENTHRTCAESLTQ--------KGDVNEMAKQGSDVL 526
BLAST of mRNA_H-elongata_contig8761.16294.1 vs. uniprot
Match: D0NYU7_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NYU7_PHYIT) HSP 1 Score: 224 bits (570), Expect = 1.980e-65 Identity = 124/293 (42.32%), Postives = 172/293 (58.70%), Query Frame = 1
Query: 646 VPKRPTPVWFAGSGAIQAEWSALPGGA------------------RIVRDLEGLEEQGSYHKYVALVEGLMVAHLRADDQRGPTSLVKRLWRQLVVTCTAFGVRCTETRRFERALELLKRAGVLLSRQVL-DKRETMELRAFISDAYGLYYLKRGKPTAALDYVQKAMRTHARLEDWGHLAKCHLHAAVVLSKLSRHDEALQYLGQVLSMVQEGKLDV-----GGNSPQKLCLVAICYHNVAVEHLIQHHVGEACMSSQNARRLARLCLSYSNRWLHSFEGTHK---LALAEL 1443
+PK P P+WFAG+GA++A W AL G R+ ++ LE + + + + +E L++A +RA RG L +LW+QLVVTC AF RC + ++F L+L+K+A L+ +L D EL A++ D Y YY KR KP A L Y+ KA H+R W HLAKC LH A +LS +H EA++Y+ +L M++E KL+ GG S QKLCL A+CY+N+AVE L A +SS NA+RLA+LCLSYSNRWL F+ T + LA+A L
Sbjct: 1 MPKVPRPIWFAGTGAVKAVWCALADGLSQLQPQHSMAESLSVCDHRLCEEVRQLETKKKFTQCITTLESLLIALVRA---RGVDELETKLWKQLVVTCNAFASRCIDYQKFPTGLQLMKQAEHLIDNSILVDNTTRTELLAYLYDTYAHYYYKRRKPHAGLQYMMKAHEIHSRQSSWSHLAKCRLHIANLLSFQMKHVEAMRYMASILEMIEENKLEETSEAGGGGSAQKLCLAAVCYNNLAVEQLHMREFEAASVSSSNAQRLAKLCLSYSNRWLAQFQATSECVALAIATL 290 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8761.16294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8761.16294.1 >prot_H-elongata_contig8761.16294.1 ID=prot_H-elongata_contig8761.16294.1|Name=mRNA_H-elongata_contig8761.16294.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=522bp RVGGSSDDSAESPVKIDSEWENTLAKNILSLYQAKLKAELDEKKGALEEGback to top mRNA from alignment at H-elongata_contig8761:4697..9463- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8761.16294.1 ID=mRNA_H-elongata_contig8761.16294.1|Name=mRNA_H-elongata_contig8761.16294.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4767bp|location=Sequence derived from alignment at H-elongata_contig8761:4697..9463- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8761:4697..9463- >mRNA_H-elongata_contig8761.16294.1 ID=mRNA_H-elongata_contig8761.16294.1|Name=mRNA_H-elongata_contig8761.16294.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3132bp|location=Sequence derived from alignment at H-elongata_contig8761:4697..9463- (Himanthalia elongata Himel1 dioecious)back to top |