mRNA_H-elongata_contig8760.16293.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8760.16293.1
Unique NamemRNA_H-elongata_contig8760.16293.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: D8LJ20_ECTSI (Mitochondrial carrier protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ20_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 1.070e-66
Identity = 131/238 (55.04%), Postives = 163/238 (68.49%), Query Frame = 1
Query:  226 EIPRVMAYCVAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTT-RKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAIGQGGLFAGIGTRIFYIGASGATFFVVYEAMKTRLALARKAGPNAKDVRA 936
            ++PR + +C+AA LGDMTG+LWLVP EVVKVQ+QGG HAT+ +A +SIFR  G+ GFYQGF GQV RDVPFR IQLT+YELLR  + T R+R  T  AT     + G  + RA G  G   A  G++G  +  ++S+ DAALLG  AGA+SA  TCPLDV+RTRLM        VGGG   A+TWA AI  GGL +G+GTR+FYIG S A FFVVYEA+K RL +   + P A   +A
Sbjct:  126 QLPRAITFCLAAVLGDMTGSLWLVPSEVVKVQMQGGLHATVGQAAMSIFRKSGVGGFYQGFSGQVGRDVPFRAIQLTSYELLRTLLKTWRRRQHTGVATERGDDSGGVPVGRARG--GVATAAAGDDG--EHAALSSGDAALLGGLAGAISATFTCPLDVVRTRLM--------VGGGGGAAETWAAAIKAGGLLSGLGTRVFYIGTSSAVFFVVYEAIKVRLGVVAASSPPAATSKA 351          
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: A0A6V1WYU8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WYU8_HETAK)

HSP 1 Score: 118 bits (296), Expect = 2.350e-26
Identity = 84/223 (37.67%), Postives = 119/223 (53.36%), Query Frame = 1
Query:  226 EIPRVMAYCVAACLGDMTGNLWLVPFEVVKVQIQ--GGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAIGQG--GLFAGIGTRIFYIGASGATFFVVYEAMK 882
             + +   Y ++A LGD+TG+ WLVP E+VK+++Q  GG    +A     I    G  GFY+G+ GQ+ RDVPFR IQLTTYE L+   + R RN+   A G D                     EG E G     +S  + A+LG+ AG+ SA +T PLDVI+TR+M G     G  G + +  T A    +G   ++ G+  R+ Y+G S A FF+ YE +K
Sbjct:   69 NVSKTFTYFISAILGDITGSFWLVPSEIVKLRLQSGGGGGLGLAGTIGDILATSGPGGFYKGYTGQIARDVPFRAIQLTTYETLKTLYS-RLRNARRVAAGLDPL-------------------EGAEAGK----LSGLEGAVLGAVAGSFSAGVTTPLDVIKTRMMMG----GGAAGRSVLDVTRALVEKEGPMAVWKGLVPRVTYVGPSVAIFFMTYEVVK 263          
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: A0A7S2V2B5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2B5_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.220e-26
Identity = 84/222 (37.84%), Postives = 117/222 (52.70%), Query Frame = 1
Query:  229 IPRVMAYCVAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLS-IFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAIGQGGLFAGIGTRIFYIGASGATFFVVYEAMKTRL 891
            I +   Y +AAC+GD+TG+ WLVP EVVK ++Q G+ +     T+S ++R  GL GFY G+  Q+ RDVPFR IQL +YE ++ A    + N                      RR     +E EE       +S  +  +LG+ AG+ SA  T PLDVI+TR+M  A   S V     VA +   + G  GLF G+G R+ YI  S A FF  YE ++ R+
Sbjct:  257 INQTFIYLIAACMGDITGSFWLVPSEVVKQKMQTGAMSQGLGGTVSAVWREKGLGGFYAGYSSQISRDVPFRAIQLVSYETVKSAYLRWRSN----------------------RRAAAGLKEQEE-------LSGVEGVILGAIAGSFSAACTTPLDVIKTRMMTEATGQSVVE----VASSLLQSGGVQGLFRGLGARVGYIAPSAAIFFCTYELVRQRI 445          
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: M2Y040_GALSU (Mitochondrial carrier (BOU / S-adenosylmethionine carrier) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y040_GALSU)

HSP 1 Score: 114 bits (286), Expect = 1.080e-24
Identity = 82/220 (37.27%), Postives = 114/220 (51.82%), Query Frame = 1
Query:  253 VAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGA---IGQGGLFA---GIGTRIFYIGASGATFFVVYEAMKTRLA 894
            +AA +GD+TG+LWL P EVVK ++Q G ++   +A   IF   GL GFYQG+ GQ+ RD+PFR IQL +YE LR      K+ S+                                       +S  +  ++G  +G+++A +T PLDV++TRLM       GV   A+ +  W  A   +   GL A   G+G R+FYIG SGA FFVVYE MK  L+
Sbjct:  155 LAAIMGDLTGSLWLCPSEVVKSRLQAGQYSNTLDAIRKIFMTQGLKGFYQGYVGQIARDIPFRAIQLLSYEELRWRYRQWKKLSS------------------------------------IEDLSNIENLVIGLVSGSVTAAVTTPLDVLKTRLMT---QPIGVSTIAY-SSAWDCARQLVQHEGLQAFWKGLGPRVFYIGPSGAIFFVVYEGMKRMLS 334          
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: A0A5J4YTC7_PORPP (S-adenosylmethionine carrier 1, chloroplastic/mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTC7_PORPP)

HSP 1 Score: 114 bits (285), Expect = 2.730e-24
Identity = 83/243 (34.16%), Postives = 114/243 (46.91%), Query Frame = 1
Query:  229 IPRVMAYCVAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAI-------GQGGLFAGIGTRIFYIGASGATFFVVYEAMKTRLALARKAGPNAKDVRA 936
            +P  +   + ACLGD+TG+LWL P E +K  +Q G H ++ EA    ++N GL GFYQG+ GQ+ RDVPFR IQL+ YE ++                          ARA                 K       D  ++G+ AG++S+V+T PLDVI+TRLM      +  GG A V +     +       G G L  G+  R+ YI  S A FF VYEA    +   R A   +   RA
Sbjct:  133 MPSELRVMLGACLGDLTGSLWLCPAERIKQTLQSGVHGSVLEAVRKTYKNGGLPGFYQGYSGQIGRDVPFRIIQLSVYEKIKAM-----------------------YARAY---------------LKEREAVTTDNLIIGALAGSISSVLTAPLDVIKTRLM------TDQGGSARVYKNALDCVVKIVRAEGPGVLARGVVPRVIYITPSVAIFFAVYEATLRFIRNRRAAADPSAATRA 331          
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: A0A1X6PJV1_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJV1_PORUM)

HSP 1 Score: 113 bits (283), Expect = 5.640e-24
Identity = 82/222 (36.94%), Postives = 112/222 (50.45%), Query Frame = 1
Query:  226 EIPRVMAYCVAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAIGQGGLFAGIGTRIFYIGASGATFFVVYEAMKTRL 891
             +P       AA +GD+TG+LWL P E++K ++Q G           ++   G   FYQG+  QV RDVPFR IQL TYE LR A    K           A+  G+A+A                     ++VS  +  LLG+AAG+ +A +T PLDV++TR+M  A   + VGG   V +      G  GL  G+G R+ YIG S A FF V+E +K RL
Sbjct:  149 RLPPAWRTAAAAVVGDVTGSLWLTPGELIKQKVQAGGAGGAVGVARRMWAAGGAGAFYQGYASQVARDVPFRVIQLVTYEELRRAYVGAKARR--------ARPAGAAVAPXXXX-------XXXXXXAPKVAVSGVEGMLLGAAAGSFTAAVTTPLDVVKTRMMT-AEVGALVGGVPGVVRQVVREEGLRGLARGMGPRVVYIGPSCAIFFAVFEGVKGRL 354          
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: A0A7S1TL60_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TL60_9RHOD)

HSP 1 Score: 103 bits (258), Expect = 2.570e-21
Identity = 79/241 (32.78%), Postives = 112/241 (46.47%), Query Frame = 1
Query:  223 QEIPRVMAYCVAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAIG-------QGG---LFAGIGTRIFYIGASGATFFVVYEAMKTRLALARKAGP 915
            Q +P  +   +AA   D+ G+ WL P EVVK Q+Q G H ++  AT SI    G    YQG+ GQ+ RDVPFR + L+ YE +R   T                                  RE E G     +++  D+  LG+AAG+++A +T PLDV++TRLM  A  S        + + +AG +        +GG   LF G   R+ Y+    A FF VYEA  +R+   R   P
Sbjct:   84 QAVPEQLRIVLAAVAADICGSFWLAPAEVVKQQVQAGLHPSVLTATSSILARGGPLALYQGYLGQISRDVPFRVLLLSVYERIRRRYT----------------------------------REWEPG----RALTPRDSLALGAAAGSVAAAVTTPLDVVKTRLMTDASAS--------LRREFAGPLDCFSQLLRKGGPKELFRGFVPRLLYLTPGLAIFFAVYEATLSRITRPRPQSP 278          
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: F0YC20_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC20_AURAN)

HSP 1 Score: 99.0 bits (245), Expect = 5.080e-20
Identity = 73/207 (35.27%), Postives = 98/207 (47.34%), Query Frame = 1
Query:  256 AACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAIGQGGLFAGIGTRIFYIGASGATFFVVYEA 876
            AA +GD  G LWLVP EV+K ++Q G H  +  A  + +R  GL GFY G  GQ++RD+PFRCIQ+T YE LR                     RGSA                                ++G+A G  +A+IT P+D+++TR+M           G+ VA  +A   G  G + G   R  Y+G S A FFVVYEA
Sbjct:   80 AAVVGDALGALWLVPHEVLKQRLQTGVHGALGAAVAATWRTGGLLGFYSGLRGQLLRDIPFRCIQMTLYESLR--------------------GRGSA-------------------------------GVVGAAVGTATALITTPMDLVKTRVMVTDGRL-----GSVVADVYA-REGVAGFWRGALHRAAYVGPSTAIFFVVYEA 229          
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: A0A7S3A1G4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A1G4_9RHOD)

HSP 1 Score: 100 bits (249), Expect = 8.670e-20
Identity = 78/219 (35.62%), Postives = 103/219 (47.03%), Query Frame = 1
Query:  253 VAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLMAGAPPSSGVGGGAFVAQTWAGAIGQGGLFAGIGTRIFYIGASGATFFVVYEAMKTRLALARKA 909
            +AA  GD+TG+LWL P EV+K Q Q G +A+ A A     +  G+AG Y+G+ G VVRDVPFR +QL  YE  +     R +  T                                  N   ++      +LG+ AG +    T PLDV++TRLM      +  G    V QT   A G  GLF G+G R+  I  S A FFV YEA  T  AL R++
Sbjct:  124 LAAVFGDITGSLWLCPSEVIKQQQQSGLYASFASAFQGALKQSGVAGLYKGYSGLVVRDVPFRVVQLVMYEECKKFWKERNKRET----------------------------------NDIENL------VLGAVAGMVGGAATTPLDVVKTRLMTQGSTRTYKGALDCVKQTVQ-AEGIPGLFRGVGPRVLLIAPSCAIFFVAYEA--TIRALKRRS 299          
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Match: A0A1X6NJF7_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJF7_PORUM)

HSP 1 Score: 99.4 bits (246), Expect = 2.490e-19
Identity = 83/222 (37.39%), Postives = 108/222 (48.65%), Query Frame = 1
Query:  241 MAYCVAACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGFGGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALARALGRRGGDRAREG--EEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIRTRLM---AGAPPSSGVGGGAFVAQTWAGAIGQGGLFAGIGTRIFYIGASGATFFVVYEAMKTRL 891
            +A+ +AA  GD+  +    PFEVVK ++Q G HAT A+A  S++R  G  GFY G+G  V+R++PF  +Q   YE L                    KTR +A           RAR G   EG  +    SA      GSAAGA+SA +T PLDV++TR+M   AG  P  GV  G        GA     L AG+  R+ +I   GA FF  YE  K  L
Sbjct:  131 VAHMLAAAGGDVASSTVRAPFEVVKQRLQAGLHATSADAVRSVWRTSGARGFYAGYGSLVLRELPFDALQFPLYEAL--------------------KTRWAA----------SRARAGYPNEGRLQTWQTSAC-----GSAAGAVSAAVTTPLDVVKTRMMTQKAGTVPYKGVVDGLSRIAREEGAAA---LAAGMLPRVVWIALGGAIFFGGYEVTKAHL 314          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8760.16293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ20_ECTSI1.070e-6655.04Mitochondrial carrier protein, putative n=2 Tax=Ec... [more]
A0A6V1WYU8_HETAK2.350e-2637.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V2B5_9STRA4.220e-2637.84Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
M2Y040_GALSU1.080e-2437.27Mitochondrial carrier (BOU / S-adenosylmethionine ... [more]
A0A5J4YTC7_PORPP2.730e-2434.16S-adenosylmethionine carrier 1, chloroplastic/mito... [more]
A0A1X6PJV1_PORUM5.640e-2436.94Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S1TL60_9RHOD2.570e-2132.78Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
F0YC20_AURAN5.080e-2035.27Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3A1G4_9RHOD8.670e-2035.62Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6NJF7_PORUM2.490e-1937.39Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8760contigH-elongata_contig8760:7354..9811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score232.3
Seed ortholog evalue2.8e-58
Seed eggNOG ortholog2880.D8LJ20
KEGG rclassRC00017,RC00425
KEGG koko:K05857,ko:K14684,ko:K15111
KEGG TC2.A.29.18,2.A.29.23
KEGG ReactionR03332,R03435,R10952
KEGG Pathwayko00562,ko01100,ko04020,ko04070,ko04919,ko04933,map00562,map01100,map04020,map04070,map04919,map04933
KEGG ModuleM00130
EggNOG free text desc.S-adenosyl-L-methionine transmembrane transport
EggNOG OGsKOG0768@1,KOG0768@2759
EC3.1.4.11
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial carrier protein, putative
Ec32 orthologEc-20_002340.1
Exons3
Model size1447
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8760.16293.1prot_H-elongata_contig8760.16293.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8760 7462..9303 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931277.0119607-UTR-H-elongata_contig8760:7353..74611622931277.0119607-UTR-H-elongata_contig8760:7353..7461Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8760 7354..7461 +
1691679770.0771947-UTR-H-elongata_contig8760:7353..74611691679770.0771947-UTR-H-elongata_contig8760:7353..7461Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8760 7354..7461 +
1622931277.1015568-UTR-H-elongata_contig8760:9303..98111622931277.1015568-UTR-H-elongata_contig8760:9303..9811Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8760 9304..9811 +
1691679770.115146-UTR-H-elongata_contig8760:9303..98111691679770.115146-UTR-H-elongata_contig8760:9303..9811Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8760 9304..9811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931277.0297916-CDS-H-elongata_contig8760:7461..76801622931277.0297916-CDS-H-elongata_contig8760:7461..7680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8760 7462..7680 +
1691679770.087864-CDS-H-elongata_contig8760:7461..76801691679770.087864-CDS-H-elongata_contig8760:7461..7680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8760 7462..7680 +
1622931277.0450714-CDS-H-elongata_contig8760:8296..83861622931277.0450714-CDS-H-elongata_contig8760:8296..8386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8760 8297..8386 +
1691679770.096306-CDS-H-elongata_contig8760:8296..83861691679770.096306-CDS-H-elongata_contig8760:8296..8386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8760 8297..8386 +
1622931277.0573928-CDS-H-elongata_contig8760:8781..93031622931277.0573928-CDS-H-elongata_contig8760:8781..9303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8760 8782..9303 +
1691679770.10511-CDS-H-elongata_contig8760:8781..93031691679770.10511-CDS-H-elongata_contig8760:8781..9303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8760 8782..9303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8760.16293.1

>prot_H-elongata_contig8760.16293.1 ID=prot_H-elongata_contig8760.16293.1|Name=mRNA_H-elongata_contig8760.16293.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=277bp
MFSIRCSSLDTSSPVVPRALNLVDLSLPHLTGPMGPSPQEIPRVMAYCVA
ACLGDMTGNLWLVPFEVVKVQIQGGSHATIAEATLSIFRNFGLAGFYQGF
GGQVVRDVPFRCIQLTTYELLRVAVTTRKRNSTARATGFDAKTRGSALAR
ALGRRGGDRAREGEEGGNKFLSVSAADAALLGSAAGALSAVITCPLDVIR
TRLMAGAPPSSGVGGGAFVAQTWAGAIGQGGLFAGIGTRIFYIGASGATF
FVVYEAMKTRLALARKAGPNAKDVRA*
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mRNA from alignment at H-elongata_contig8760:7354..9811+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8760.16293.1 ID=mRNA_H-elongata_contig8760.16293.1|Name=mRNA_H-elongata_contig8760.16293.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2458bp|location=Sequence derived from alignment at H-elongata_contig8760:7354..9811+ (Himanthalia elongata Himel1 dioecious)
CACATCACGGCGAGTGTAAGCTTTGACCCCGTCACCGCCTCTCCGAACGA GGACCTTTTGTCTCCGTGGTCGGTCCAACAGAGAACCCGACGACGCAGTA CCGGTCGGATGTTTAGCATACGATGTTCGTCGCTTGATACCTCCTCGCCT GTTGTCCCCCGAGCGCTGAACTTGGTCGACCTGTCGTTGCCCCATTTGAC TGGACCTATGGGGCCCTCGCCACAGGAGATCCCACGAGTGATGGCCTACT GCGTAGCGGCGTGTCTGGGAGACATGACGGGCAATCTATGGCTCGTTCCC TTCGAGGTGGTGAAGGTGCAGATACAGGTAAGGGATGATGTGATGGCGCG CCAACCCTGGGGACCCTTGGCGGTAATCTGATTACCATAGGAAACCCCGT GTTGGACGTCAGGGTGAGCAGAGGGGAGGGGGTGTGTGTCTAAGTTTGGA GGAGCGCGGCGGAAGCTTTGAGAGGCGTCCGAGGTACGAACTGGTGTCGC CGGACTTTGATTTAGAACGATTTTTCTCCTTCTTGATTCAGATCCCGTTG TAAAACTCTCGCCCGTGAAGGCGCTGTTGTAAGCGTGACACTTATAGGGC CTTGTTTTCCGTTTGTTTTCCTCGCGGCGCGGCTCTTGATTGACCGGGGG TCGTCTAGGAAGCGATGTGCGCTGCGTGCCGCGTGTTTGTTGGTTTTTTG TCGATATCGATAGCATCCTTATTTTATCTGCCGGGAACCCTTTGGGACCA ACCTCTTCGTATTATATTAGATGGTAATCGAGTACCGGGTACTGCGGTAA GGTGATTTAAATCGCGTTTCACCCCGCGAACGCCTCCATGAGCATGTTCG TTTTCTCTCCCGCCTGACGCCTCTTGCCTGCATCCCTTGTCTGAAATCAA AACACAAAACAAAAACAAAATATATCCTCGCCAAAATCTGAAGGGGGGAT CACACGCCACTATTGCTGAGGCAACGCTTTCGATTTTTAGAAACTTCGGC CTGGCTGGATTTTATCAAGGCTTTGGCGGTCAGGTGAGAAATTATGCACC CCCTCCCCCCCAGAAAAAAAACAGAATACCGTCCTCCTCGTGATGGGGGA TGCTGATATTATTTATATTTATATTTTTAGAATTATTTTAAAACGCGTGC GAGTGTTGTAATCTCGAAAATAAAATAAAATAATAATTTGTTGGTTCTCT TACACGGTAATAATTTCTCGTTTTTCTCCCCTACGCGGCAGTATACTATC AAAAACGTTTTTAAAGAGGTGTGCGGTTTCCATCGACGATTAACTGACCA CGTAGTACTCATTCTAAAGAAGAGACACTCGAGCCCCCCGACCTCTCCCC GCGACACGGATGGAAACCCCGACCCCCCCCTCCCCACCCCCTTCACCTCC GGTTTCTTCGACTTGGACCCGCGATCAGGTTGTCCGCGACGTGCCGTTTC GGTGCATCCAGCTAACGACGTACGAGCTGCTCCGCGTCGCGGTGACCACC CGGAAGAGAAACTCTACCGCTCGCGCGACAGGTTTCGACGCGAAAACGAG GGGCTCTGCGCTTGCCCGCGCTCTCGGTCGTCGCGGCGGGGACCGCGCAA GAGAAGGAGAAGAAGGAGGCAACAAATTCTTGTCCGTGTCGGCCGCGGAC GCCGCTCTCCTTGGCAGCGCCGCAGGTGCATTAAGCGCCGTCATCACGTG TCCGCTGGACGTGATCAGGACGCGGCTGATGGCCGGTGCGCCCCCCTCGT CCGGGGTGGGCGGTGGGGCCTTCGTGGCGCAGACGTGGGCGGGAGCGATC GGTCAGGGCGGCTTGTTCGCTGGGATAGGCACGCGGATCTTCTACATTGG CGCCTCGGGGGCCACGTTCTTCGTGGTGTACGAGGCTATGAAGACGCGGC TGGCGCTGGCCAGGAAGGCTGGGCCGAACGCGAAGGACGTGCGCGCGTGA TTTCAATTTTGTCAGAAACGAGGAATGACGATTCGACGTGCACACCAAAT CGACCCACGCACGAAAGGACGAAATATGGTGGGGATATTCGCAAAGGAGA TGGGGAGGGGAGGGTCAATACCCGCCGGGCTTCCCCTAGATTTTGATCGG TTGTATAGGACAGTGCGACCAACAACAACATGCTTTATACGAGAGAGCAT GTGTGCGCGCCCGCGCAGACATAAGTAAAAAGTTTCGCGCTGTACCGGAA GAAAGGTGATCTATTTTTTGTGTGTGGCTCCTCGAGGGTAGTTTGTTTTC GTGTGACGGGTGGAAGAAGAAAACGTGCTTGAGCGCGGGTAGCTGATTTT GCTGACACACGACAGTGAAGCACCCCCTTCCTCGCCCCTTCCCCCTCCCT TGATGAGTGACTCGTAAGGTCAGTCGGGTAGAGCACGAAGAGAGATAAAC CCTCTCCCCTTGAAAACAGTCCCCATCGATAACGTCGTGTCACGTTTTCC TTGTTATC
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Coding sequence (CDS) from alignment at H-elongata_contig8760:7354..9811+

>mRNA_H-elongata_contig8760.16293.1 ID=mRNA_H-elongata_contig8760.16293.1|Name=mRNA_H-elongata_contig8760.16293.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at H-elongata_contig8760:7354..9811+ (Himanthalia elongata Himel1 dioecious)
ATGTTTAGCATACGATGTTCGTCGCTTGATACCTCCTCGCCTGTTGTCCC
CCGAGCGCTGAACTTGGTCGACCTGTCGTTGCCCCATTTGACTGGACCTA
TGGGGCCCTCGCCACAGGAGATCCCACGAGTGATGGCCTACTGCGTAGCG
GCGTGTCTGGGAGACATGACGGGCAATCTATGGCTCGTTCCCTTCGAGGT
GGTGAAGGTGCAGATACAGATGTTTAGCATACGATGTTCGTCGCTTGATA
CCTCCTCGCCTGTTGTCCCCCGAGCGCTGAACTTGGTCGACCTGTCGTTG
CCCCATTTGACTGGACCTATGGGGCCCTCGCCACAGGAGATCCCACGAGT
GATGGCCTACTGCGTAGCGGCGTGTCTGGGAGACATGACGGGCAATCTAT
GGCTCGTTCCCTTCGAGGTGGTGAAGGTGCAGATACAGGGGGGATCACAC
GCCACTATTGCTGAGGCAACGCTTTCGATTTTTAGAAACTTCGGCCTGGC
TGGATTTTATCAAGGCTTTGGCGGTCAGGGGGGATCACACGCCACTATTG
CTGAGGCAACGCTTTCGATTTTTAGAAACTTCGGCCTGGCTGGATTTTAT
CAAGGCTTTGGCGGTCAGGTTGTCCGCGACGTGCCGTTTCGGTGCATCCA
GCTAACGACGTACGAGCTGCTCCGCGTCGCGGTGACCACCCGGAAGAGAA
ACTCTACCGCTCGCGCGACAGGTTTCGACGCGAAAACGAGGGGCTCTGCG
CTTGCCCGCGCTCTCGGTCGTCGCGGCGGGGACCGCGCAAGAGAAGGAGA
AGAAGGAGGCAACAAATTCTTGTCCGTGTCGGCCGCGGACGCCGCTCTCC
TTGGCAGCGCCGCAGGTGCATTAAGCGCCGTCATCACGTGTCCGCTGGAC
GTGATCAGGACGCGGCTGATGGCCGGTGCGCCCCCCTCGTCCGGGGTGGG
CGGTGGGGCCTTCGTGGCGCAGACGTGGGCGGGAGCGATCGGTCAGGGCG
GCTTGTTCGCTGGGATAGGCACGCGGATCTTCTACATTGGCGCCTCGGGG
GCCACGTTCTTCGTGGTGTACGAGGCTATGAAGACGCGGCTGGCGCTGGC
CAGGAAGGCTGGGCCGAACGCGAAGGACGTGCGCGCGTGAGTTGTCCGCG
ACGTGCCGTTTCGGTGCATCCAGCTAACGACGTACGAGCTGCTCCGCGTC
GCGGTGACCACCCGGAAGAGAAACTCTACCGCTCGCGCGACAGGTTTCGA
CGCGAAAACGAGGGGCTCTGCGCTTGCCCGCGCTCTCGGTCGTCGCGGCG
GGGACCGCGCAAGAGAAGGAGAAGAAGGAGGCAACAAATTCTTGTCCGTG
TCGGCCGCGGACGCCGCTCTCCTTGGCAGCGCCGCAGGTGCATTAAGCGC
CGTCATCACGTGTCCGCTGGACGTGATCAGGACGCGGCTGATGGCCGGTG
CGCCCCCCTCGTCCGGGGTGGGCGGTGGGGCCTTCGTGGCGCAGACGTGG
GCGGGAGCGATCGGTCAGGGCGGCTTGTTCGCTGGGATAGGCACGCGGAT
CTTCTACATTGGCGCCTCGGGGGCCACGTTCTTCGTGGTGTACGAGGCTA
TGAAGACGCGGCTGGCGCTGGCCAGGAAGGCTGGGCCGAACGCGAAGGAC
GTGCGCGCGTGA
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