mRNA_H-elongata_contig87593.16291.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig87593.16291.1 vs. uniprot
Match: D7G717_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G717_ECTSI) HSP 1 Score: 198 bits (504), Expect = 1.440e-59 Identity = 108/143 (75.52%), Postives = 121/143 (84.62%), Query Frame = 1
Query: 1 SMLDIYYGIIATVAAAAAIRCYLKFVRGPEPKSV------VIITGSNTGVGFETAKSLVQMGAHVIMACRSEEKAKGAMERITSELEAVAGAIRNNTAPAVRGQMTFMVLDLSSLESVRAFVAEFKSSKLGLDSLILNAGVMH 411
SML+I YGIIATVAAAA RCYLKFVRG EP+SV VIITGSNTGVG+ETAK+LV MGAHVIMACRSEEKA+ A+E IT ELEA A AIR+NT ++G++TFM LDLSSL +VR FVAEFK+SKLGLDSLILNAGVMH
Sbjct: 67 SMLEINYGIIATVAAAAVARCYLKFVRGVEPRSVNMSGKVVIITGSNTGVGYETAKALVNMGAHVIMACRSEEKARKAIEDITFELEAAAKAIRHNTDTGIKGKLTFMKLDLSSLAAVRVFVAEFKASKLGLDSLILNAGVMH 209
BLAST of mRNA_H-elongata_contig87593.16291.1 vs. uniprot
Match: A0A835YQM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQM3_9STRA) HSP 1 Score: 113 bits (282), Expect = 7.510e-27 Identity = 65/135 (48.15%), Postives = 86/135 (63.70%), Query Frame = 1
Query: 25 IIATVAAAAAIRCYLKFVRGPEPK------SVVIITGSNTGVGFETAKSLVQMGAHVIMACRSEEKAKGAMERITSELEAVAGAIR-NNTAPAVRGQMTFMVLDLSSLESVRAFVAEFKSSKLGLDSLILNAGVM 408
++ A + I Y + G P+ VV++TG+N G+G ETAK+L+ MGAHVI+ACRSEE+AK A+E +T L VA R P +RG+ TFM LDL SL+SVR F E++ KL LD L+LNAGVM
Sbjct: 83 LMGMTAMLSGIMTYRTHIMGRAPEHVDMQGKVVVVTGANAGIGLETAKALMGMGAHVILACRSEERAKEAIETMTRGLLNVAALERPRGGVPTLRGKATFMPLDLCSLKSVRNFATEYRKRKLPLDVLVLNAGVM 217
BLAST of mRNA_H-elongata_contig87593.16291.1 vs. uniprot
Match: A0A6H5J7F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F6_9PHAE) HSP 1 Score: 108 bits (271), Expect = 3.000e-25 Identity = 57/82 (69.51%), Postives = 67/82 (81.71%), Query Frame = 1
Query: 166 GAHVIMACRSEEKAKGAMERITSELEAVAGAIRNNTAPAVRGQMTFMVLDLSSLESVRAFVAEFKSSKLGLDSLILNAGVMH 411
G + ACRSEEKA+ A+E IT ELEA A AIR+NT ++G++TFM LDLSSL +VR FVAEFK+SKLGLDSLILNAGVMH
Sbjct: 100 GHRTVGACRSEEKARKAIENITFELEAAAKAIRHNTDTGIKGKLTFMKLDLSSLAAVRVFVAEFKASKLGLDSLILNAGVMH 181
BLAST of mRNA_H-elongata_contig87593.16291.1 vs. uniprot
Match: A0A6J8CBX1_MYTCO (Uncharacterized protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8CBX1_MYTCO) HSP 1 Score: 96.7 bits (239), Expect = 4.020e-21 Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = 1
Query: 67 LKFVRGPEPKSVVIITGSNTGVGFETAKSLVQMGAHVIMACRSEEKAKGAMERITSELEAVAGAIRNNTAPAVRGQMTFMVLDLSSLESVRAFVAEFKSSKLGLDSLILNAGVMHSVSVT 426
+ V P K +VI+TG+N+GVG+ETAK + MGAHV++ACRSEEKA+ AM R+ E + +N + FM LDL+SL+S +AF+ FK+ L+ LI NAG+ VT
Sbjct: 7 IPMVSQPRDK-IVIVTGANSGVGYETAKFIAMMGAHVVLACRSEEKARDAMRRMNEEFQTEKQLRADNVITDDELDIEFMKLDLASLKSTKAFIDNFKAKHKKLNLLICNAGIYSPHQVT 125
BLAST of mRNA_H-elongata_contig87593.16291.1 vs. uniprot
Match: A0A7S2PRA5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PRA5_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 9.650e-21 Identity = 66/154 (42.86%), Postives = 91/154 (59.09%), Query Frame = 1
Query: 4 MLDIYYGIIATV--AAAAAIR-CYLKFVRGPEPK--------SVVIITGSNTGVGFETAKSLVQMGAHVIMACRSEEKAKGAMERITSEL---EAVAGAIRNNTAPAVRGQ-----MTFMVLDLSSLESVRAFVAEFKSSKLGLDSLILNAGVM 408
ML + Y +IA + + A++R YL ++ GP+PK VV+ITGSN G+G ETA+ L+ GA VI ACR+ EKAK A++ I ++ E + N T VR + M F+ LDLS LESVR+ V +F+S + L LI NAGVM
Sbjct: 7 MLPMSYAVIAIIDIISIASLRYLYLVYIEGPKPKLSRNAMAGRVVLITGSNAGIGLETARQLLYAGATVIFACRNAEKAKEAIDGIYDDINSGEDGSNGSENGTQHLVRPKPLRERMLFLKLDLSDLESVRSAVCKFESMNMKLHILINNAGVM 160
BLAST of mRNA_H-elongata_contig87593.16291.1 vs. uniprot
Match: K1PV89_CRAGI (WW domain-containing oxidoreductase n=4 Tax=Crassostrea gigas TaxID=29159 RepID=K1PV89_CRAGI) HSP 1 Score: 93.6 bits (231), Expect = 2.070e-20 Identity = 51/110 (46.36%), Postives = 68/110 (61.82%), Query Frame = 1
Query: 100 VVIITGSNTGVGFETAKSLVQMGAHVIMACRSEEKAKGAMERITSELEAVAGAIRNNTAPAVRGQMTFMVLDLSSLESVRAFVAEFKSSKLGLDSLILNAGV-MHSVSVT 426
VV++TG NTG+G+ET+K + MGA VI+ACRSEE+AK A+E++ E E R + FM LDL+SL SV F+ FKS K L L+ NAG+ MH + T
Sbjct: 17 VVLVTGGNTGIGYETSKWIAMMGARVIIACRSEERAKNAIEKMQKEFEEEKAKGTAGICSKERLDVEFMALDLASLSSVENFIETFKSKKTKLHLLLCNAGIAMHPLEYT 126
BLAST of mRNA_H-elongata_contig87593.16291.1 vs. uniprot
Match: UPI00148ABD07 (WW domain-containing oxidoreductase n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148ABD07) HSP 1 Score: 94.0 bits (232), Expect = 3.640e-20 Identity = 56/122 (45.90%), Postives = 81/122 (66.39%), Query Frame = 1
Query: 73 FVRGP-EPKSVVIITGSNTGVGFETAKSLVQMGAHVIMACRSEEKAKGAMERITSELEAVAGAIRNNTAPAVRGQMT--FMVLDLSSLESVRAFVAEFKSSKLGLDSLILNAGV-MHSVSVT 426
F R P P+ VVI+TG NTG+G+ETAK + MGAHVI+ACR++E+A A+ R+ ++ E + T+ G+++ FM LDLSSL+S + F+ EFK+S L LI NAG+ MH ++ T
Sbjct: 7 FPREPLSPEKVVIVTGGNTGIGYETAKWIAMMGAHVIIACRTKERALHAITRMEADFEQEK---QKGTSGLTSGELSVEFMELDLSSLKSTQKFIEEFKASGKPLHVLICNAGLGMHPLTYT 125
BLAST of mRNA_H-elongata_contig87593.16291.1 vs. uniprot
Match: A0A7S4S5X8_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4S5X8_9DINO) HSP 1 Score: 93.6 bits (231), Expect = 1.700e-19 Identity = 63/134 (47.01%), Postives = 78/134 (58.21%), Query Frame = 1
Query: 34 TVAAAAAIRCYLKFVRGP--EPKS------VVIITGSNTGVGFETAKSLVQMGAHVIMACRSEEKAKGAMERITSELEAVAGAIRNNTAPAVR-GQMTFMVLDLSSLESVRAFVAEFKSSKLGLDSLILNAGVM 408
T AA A Y VR P PK+ V ++TG NTG+GFETA +L + GA V+ ACR+E KA+ AM+ + I T PAVR Q+ F+ LD+SSL SVR F A F+ S L L LILNAGVM
Sbjct: 147 TADAALASAAYRYMVRWPVCRPKAGSLQGKVCVVTGCNTGIGFETAGALARAGAVVVFACRNEAKARSAMKAL----------IACTTGPAVREDQLRFIQLDVSSLRSVRQFAAAFRESGLRLHLLILNAGVM 270
BLAST of mRNA_H-elongata_contig87593.16291.1 vs. uniprot
Match: A0A433QHX7_9FUNG (Uncharacterized protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QHX7_9FUNG) HSP 1 Score: 92.8 bits (229), Expect = 2.170e-19 Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 1
Query: 91 PKSVVIITGSNTGVGFETAKSLVQMGAHVIMACRSEEKAKGAMERITSELEAVAGAIRNNTAPAVRGQMTFMVLDLSSLESVRAFVAEFKSSKL--GLDSLILNAGVM 408
PK I+TG NTG+G+ETAKSLV G V++ACRSEE+A+GA+ER+ EL G N + + F+ LDL+SL SVRAFV F+ L GL L+ NAG+M
Sbjct: 75 PKPWAIVTGGNTGIGYETAKSLVAAGFRVVLACRSEERARGAIERMRGELATRYGQ-DNELVTELDATVHFLPLDLASLPSVRAFVPLFERISLEDGLHVLVNNAGIM 181
BLAST of mRNA_H-elongata_contig87593.16291.1 vs. uniprot
Match: UPI000B45848A (retinol dehydrogenase 14-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45848A) HSP 1 Score: 91.7 bits (226), Expect = 2.720e-19 Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 1
Query: 100 VVIITGSNTGVGFETAKSLVQMGAHVIMACRSEEKAKGAMERITSELEAVAGAIRNNTAPAVRGQMTFMVLDLSSLESVRAFVAEFKSSKLGLDSLILNAGV-MHSVSVT 426
VVI+TG+NTG+G+ETAK + MGA VI+ACRSEE+A+ AM R+ +E EA + FM LD +SL+SV F+ EFK+S L L+ NAG+ +H + T
Sbjct: 17 VVIVTGANTGIGYETAKWIAMMGATVILACRSEERAREAMTRMNAEFEAEKDRKTEGVVDYPELSIEFMKLDCASLQSVMDFIKEFKNSGRQLHVLVCNAGIGLHKQAYT 126 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87593.16291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig87593.16291.1 >prot_H-elongata_contig87593.16291.1 ID=prot_H-elongata_contig87593.16291.1|Name=mRNA_H-elongata_contig87593.16291.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp MLDIYYGIIATVAAAAAIRCYLKFVRGPEPKSVVIITGSNTGVGFETAKSback to top mRNA from alignment at H-elongata_contig87593:271..2346- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig87593.16291.1 ID=mRNA_H-elongata_contig87593.16291.1|Name=mRNA_H-elongata_contig87593.16291.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2076bp|location=Sequence derived from alignment at H-elongata_contig87593:271..2346- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig87593:271..2346- >mRNA_H-elongata_contig87593.16291.1 ID=mRNA_H-elongata_contig87593.16291.1|Name=mRNA_H-elongata_contig87593.16291.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig87593:271..2346- (Himanthalia elongata Himel1 dioecious)back to top |