mRNA_H-elongata_contig12126.1629.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12126.1629.1
Unique NamemRNA_H-elongata_contig12126.1629.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig12126.1629.1 vs. uniprot
Match: D7FQ29_ECTSI (Kinesin motor protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ29_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.000e-40
Identity = 81/121 (66.94%), Postives = 95/121 (78.51%), Query Frame = 1
Query:    1 TNQARVYAEAVAPVVRKMLDGYNCSVLAYGQTGSGKTFTMEGGL---DLDLNRSSTKDSANNLSPSKISDDPVLC-IGNLGIIPRAVHTIFREGDAGGTRRIWVYVSHMEIYNERLFDLLA 351
            T+QAR+Y+EAV PVVRKMLDG+NCSVLAYGQTGSGKTFTMEGGL   ++D+ +++  D      P  ++     C +  +GIIPRAVHTIFREG  GGTRR WVYVSHMEIYNERLFDLLA
Sbjct:  358 TSQARLYSEAVCPVVRKMLDGFNCSVLAYGQTGSGKTFTMEGGLVDPNIDVKKTAEAD------PDDVN--ATACEVEKVGIIPRAVHTIFREGGYGGTRRYWVYVSHMEIYNERLFDLLA 470          
BLAST of mRNA_H-elongata_contig12126.1629.1 vs. uniprot
Match: A0A0N4XY33_NIPBR (Kinesin-like protein n=1 Tax=Nippostrongylus brasiliensis TaxID=27835 RepID=A0A0N4XY33_NIPBR)

HSP 1 Score: 90.5 bits (223), Expect = 9.720e-19
Identity = 57/137 (41.61%), Postives = 72/137 (52.55%), Query Frame = 1
Query:    1 TNQARVYAEAVAPVVRKMLDGYNCSVLAYGQTGSGKTFTMEGGLDLDLNRSSTKDSANNLSPSKISDDPVLCIGNLGIIPRAVHTIFREGDAG------------------GTRRIWVYVSHMEIYNERLFDLLAAS 357
            T+Q R+YAE V+P V ++L GYNC++ AYGQTG+GKT+TMEGG               N   S    DP     + GIIPRAV  IF E +                     T    V VS++E+YNE LFDLLAA+
Sbjct:   59 TSQERIYAEMVSPQVERVLAGYNCTLFAYGQTGTGKTYTMEGG---------------NGERSSYRQDP-----STGIIPRAVEHIFEELEKSVGVMKMVFLLRLMNESIKNTEEYSVRVSYLELYNEELFDLLAAT 175          
BLAST of mRNA_H-elongata_contig12126.1629.1 vs. uniprot
Match: A0A0M3K6V5_ANISI (Kinesin-like protein n=2 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3K6V5_ANISI)

HSP 1 Score: 85.5 bits (210), Expect = 3.460e-18
Identity = 50/119 (42.02%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    1 TNQARVYAEAVAPVVRKMLDGYNCSVLAYGQTGSGKTFTMEGGLDLDLNRSSTKDSANNLSPSKISDDPVLCIGNLGIIPRAVHTIFREGDAGGTRRIWVYVSHMEIYNERLFDLLAAS 357
            ++Q+ +Y + V P+V++++ GYNC++ AYGQTG+GKT+TMEG  + D N   T             DDP      +GIIPRA+  IF E D        V VS++E+YNE L DLL  S
Sbjct:   69 SSQSTIYMDVVDPLVKEVIQGYNCTIFAYGQTGTGKTYTMEG--EHDPNGQYTW-----------QDDP-----QMGIIPRALMQIFNELDNQNVEEYSVRVSYVELYNEELNDLLNRS 169          
BLAST of mRNA_H-elongata_contig12126.1629.1 vs. uniprot
Match: A0A183V7R3_TOXCA (Kinesin-like protein n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183V7R3_TOXCA)

HSP 1 Score: 88.2 bits (217), Expect = 4.280e-18
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    1 TNQARVYAEAVAPVVRKMLDGYNCSVLAYGQTGSGKTFTMEGGLDLDLNRSSTKDSANNLSPSKISDDPVLCIGNLGIIPRAVHTIFREGDAGGTRRIWVYVSHMEIYNERLFDLLAAS 357
            ++Q+ +Y + + P++++++ GYNC+V AYGQTG+GKT+TMEG  D + + S               DDP      +GIIPRA+  IF E D        V VS++E+YNE L+DLL+ S
Sbjct:   68 SSQSTIYMDVIDPLIKQVIQGYNCTVFAYGQTGTGKTYTMEGEHDPNGSYS-------------WKDDP-----QMGIIPRALMHIFTELDRQKVEEYSVRVSYVELYNEELYDLLSGS 168          
BLAST of mRNA_H-elongata_contig12126.1629.1 vs. uniprot
Match: A0A0B2VHZ4_TOXCA (Kinesin-like protein KIF11 n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2VHZ4_TOXCA)

HSP 1 Score: 88.2 bits (217), Expect = 6.370e-18
Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 TNQARVYAEAVAPVVRKMLDGYNCSVLAYGQTGSGKTFTMEGGLDLDLNRSSTKDSANNLSPSKISDDPVLCIGNLGIIPRAVHTIFREGDAGGTRRIWVYVSHMEIYNERLFDLLAAS 357
            ++Q+ +Y + V P++++++ GYNC+V AYGQTG+GKT+TMEG  D + + S               DDP     ++GIIPRA+  IF E D        V VS++E+YNE L+DLL+ S
Sbjct:   69 SSQSTIYMDIVDPLIKEVIQGYNCTVFAYGQTGTGKTYTMEGEHDPNGSYS-------------WKDDP-----HMGIIPRALMHIFTELDRQKVEEYSVRVSYVELYNEELYDLLSRS 169          
BLAST of mRNA_H-elongata_contig12126.1629.1 vs. uniprot
Match: A0A3M7SVT3_BRAPC (Kinesin-like protein n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7SVT3_BRAPC)

HSP 1 Score: 87.0 bits (214), Expect = 1.570e-17
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 TNQARVYAEAVAPVVRKMLDGYNCSVLAYGQTGSGKTFTMEGGLDLDLNRSSTKDSANNLSPSKISDDPVLCIGNLGIIPRAVHTIFREGDAGGTRRIWVYVSHMEIYNERLFDLLAAS 357
            + Q  VY + V PVV+++L+GYNC++ AYGQTG+GKTFTMEG                 L+ S   DDP     N+GIIPR+V  +F    +       V +S+ME+YNE L DLL  S
Sbjct:   62 SKQIDVYNQVVRPVVKEVLEGYNCTIFAYGQTGTGKTFTMEGDYS-------------QLNDSTWEDDP-----NVGIIPRSVSHLFTLLSSMPHCEYSVKISYMELYNEELTDLLGDS 162          
BLAST of mRNA_H-elongata_contig12126.1629.1 vs. uniprot
Match: F1L594_ASCSU (Kinesin-like protein n=1 Tax=Ascaris suum TaxID=6253 RepID=F1L594_ASCSU)

HSP 1 Score: 85.9 bits (211), Expect = 1.710e-17
Identity = 50/119 (42.02%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    1 TNQARVYAEAVAPVVRKMLDGYNCSVLAYGQTGSGKTFTMEGGLDLDLNRSSTKDSANNLSPSKISDDPVLCIGNLGIIPRAVHTIFREGDAGGTRRIWVYVSHMEIYNERLFDLLAAS 357
            ++Q+ +Y + V P+V++++ GYNC++ AYGQTG+GKTFTMEG  D + + S               DDP      +GIIPRA+  IF E D        V VS++E+YNE L DLL  S
Sbjct:   69 SSQSTIYLDIVDPLVKEVIQGYNCTIFAYGQTGTGKTFTMEGEHDPEGSYS-------------WRDDP-----RMGIIPRALMQIFAELDQQKVEEYSVRVSYVELYNEELNDLLNRS 169          
BLAST of mRNA_H-elongata_contig12126.1629.1 vs. uniprot
Match: A0A1R1YH07_9FUNG (Putative kinesin-related protein n=3 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YH07_9FUNG)

HSP 1 Score: 86.7 bits (213), Expect = 2.200e-17
Identity = 49/117 (41.88%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    4 NQARVYAEAVAPVVRKMLDGYNCSVLAYGQTGSGKTFTMEGGLDLDL-NRSSTKDSANNLSPSKISDDPVLCIGNLGIIPRAVHTIFREGDAGGTRRIWVYVSHMEIYNERLFDLLA 351
            +Q  VY E   P+++++L G+NC++ AYGQTG+GKTFTMEG ++  + +RSS    A    P +++   V      GIIPR +  +F   D   T    V VSH+E+YNE L DLL+
Sbjct:   88 DQETVYQEVAMPILKEVLQGFNCTIFAYGQTGTGKTFTMEGNMNAPIPDRSSEVGVAKGFDPDRLAKKGVPA--EAGIIPRVLQRMFYLLDQS-TSEYSVSVSHLELYNEELRDLLS 201          
BLAST of mRNA_H-elongata_contig12126.1629.1 vs. uniprot
Match: A0A6G0UGK0_9BILA (Kinesin-like protein n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0UGK0_9BILA)

HSP 1 Score: 85.9 bits (211), Expect = 4.020e-17
Identity = 51/115 (44.35%), Postives = 67/115 (58.26%), Query Frame = 1
Query:    4 NQARVYAEAVAPVVRKMLDGYNCSVLAYGQTGSGKTFTMEGGLDLDLNRSSTKDSANNLSPSKISDDPVLCIGNLGIIPRAVHTIFREGDAGGTRRIWVYVSHMEIYNERLFDLL 348
             Q  VY + VAP+++++L+G+NC+V AYGQTG+GKTFTMEG          T D   + S      DP       GIIPRA+H IF      G     V VS++E+YNE L+DLL
Sbjct:   65 TQQEVYMDTVAPLIKEVLNGFNCTVFAYGQTGTGKTFTMEG----------THDEEGDYS---WDSDP-----KAGIIPRALHQIFSA--LAGIEDFCVRVSYVELYNEELYDLL 159          
BLAST of mRNA_H-elongata_contig12126.1629.1 vs. uniprot
Match: M5FQM9_DACPD (Kinesin-domain-containing protein n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5FQM9_DACPD)

HSP 1 Score: 85.9 bits (211), Expect = 4.080e-17
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    4 NQARVYAEAVAPVVRKMLDGYNCSVLAYGQTGSGKTFTMEGGLDLDLNRSSTKDSANNLSPSKISDDPVLCIGNLGIIPRAVHTIFREGDAGGTRRIW-VYVSHMEIYNERLFDLLA 351
            +QA +Y   V P++R++L+GYNCS+LAYGQTG+GKT+TM+G                +LSPS ++  P     N G+IPRA+  +F     G T   W V  S++E+YNE L DLLA
Sbjct:  152 DQATIYQSVVEPLLREVLEGYNCSLLAYGQTGTGKTYTMQG----------------DLSPSPLTGGPST---NSGMIPRALSALFTI--LGETATDWSVKCSYIELYNEELRDLLA 247          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12126.1629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ29_ECTSI1.000e-4066.94Kinesin motor protein-related n=1 Tax=Ectocarpus s... [more]
A0A0N4XY33_NIPBR9.720e-1941.61Kinesin-like protein n=1 Tax=Nippostrongylus brasi... [more]
A0A0M3K6V5_ANISI3.460e-1842.02Kinesin-like protein n=2 Tax=Anisakis simplex TaxI... [more]
A0A183V7R3_TOXCA4.280e-1840.34Kinesin-like protein n=1 Tax=Toxocara canis TaxID=... [more]
A0A0B2VHZ4_TOXCA6.370e-1841.18Kinesin-like protein KIF11 n=1 Tax=Toxocara canis ... [more]
A0A3M7SVT3_BRAPC1.570e-1742.86Kinesin-like protein n=1 Tax=Brachionus plicatilis... [more]
F1L594_ASCSU1.710e-1742.02Kinesin-like protein n=1 Tax=Ascaris suum TaxID=62... [more]
A0A1R1YH07_9FUNG2.200e-1741.88Putative kinesin-related protein n=3 Tax=Smittium ... [more]
A0A6G0UGK0_9BILA4.020e-1744.35Kinesin-like protein n=1 Tax=Halicephalobus sp. NK... [more]
M5FQM9_DACPD4.080e-1743.59Kinesin-domain-containing protein n=1 Tax=Dacryopi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12126contigH-elongata_contig12126:7907..8263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue4.2e-35
Seed eggNOG ortholog2880.D7FQ29
EggNOG free text desc.ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsCOG5059@1,KOG0243@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.5409267-CDS-H-elongata_contig12126:7906..82631622929713.5409267-CDS-H-elongata_contig12126:7906..8263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12126 7907..8263 +
1691679128.933708-CDS-H-elongata_contig12126:7906..82631691679128.933708-CDS-H-elongata_contig12126:7906..8263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12126 7907..8263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12126.1629.1prot_H-elongata_contig12126.1629.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12126 7907..8263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12126.1629.1

>prot_H-elongata_contig12126.1629.1 ID=prot_H-elongata_contig12126.1629.1|Name=mRNA_H-elongata_contig12126.1629.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
TNQARVYAEAVAPVVRKMLDGYNCSVLAYGQTGSGKTFTMEGGLDLDLNR
SSTKDSANNLSPSKISDDPVLCIGNLGIIPRAVHTIFREGDAGGTRRIWV
YVSHMEIYNERLFDLLAAS
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mRNA from alignment at H-elongata_contig12126:7907..8263+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12126.1629.1 ID=mRNA_H-elongata_contig12126.1629.1|Name=mRNA_H-elongata_contig12126.1629.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at H-elongata_contig12126:7907..8263+ (Himanthalia elongata Himel1 dioecious)
ACGAATCAGGCTCGCGTATATGCGGAAGCCGTCGCTCCAGTTGTTCGCAA GATGTTAGATGGGTACAACTGCTCGGTGTTAGCATACGGACAGACTGGCT CAGGGAAAACCTTTACTATGGAAGGCGGTCTTGACCTCGACCTCAATCGC TCGAGTACTAAGGATTCTGCGAATAACCTCTCCCCGTCCAAGATTTCAGA TGATCCTGTCCTGTGTATTGGCAACTTGGGCATCATTCCCCGTGCAGTGC ACACAATATTTCGAGAGGGTGACGCTGGAGGGACGCGGAGAATTTGGGTA TACGTGTCTCACATGGAGATCTACAACGAGAGACTCTTCGACCTTCTTGC TGCATCA
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Coding sequence (CDS) from alignment at H-elongata_contig12126:7907..8263+

>mRNA_H-elongata_contig12126.1629.1 ID=mRNA_H-elongata_contig12126.1629.1|Name=mRNA_H-elongata_contig12126.1629.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig12126:7907..8263+ (Himanthalia elongata Himel1 dioecious)
ACGAATCAGGCTCGCGTATATGCGGAAGCCGTCGCTCCAGTTGTTCGCAA
GATGTTAGATGGGTACAACTGCTCGGTGTTAGCATACGGACAGACTGGCT
CAGGGAAAACCTTTACTATGGAAGGCGGTCTTGACCTCGACCTCAATCGC
TCGAGTACTAAGGATTCTGCGAATAACCTCTCCCCGTCCAAGATTTCAGA
TGATCCTGTCCTGTGTATTGGCAACTTGGGCATCATTCCCCGTGCAGTGC
ACACAATATTTCGAGAGGGTGACGCTGGAGGGACGCGGAGAATTTGGGTA
TACGTGTCTCACATGGAGATCTACAACGAGAGACTCTTCGACCTTCTTGC
TGCATCAACGAATCAGGCTCGCGTATATGCGGAAGCCGTCGCTCCAGTTG
TTCGCAAGATGTTAGATGGGTACAACTGCTCGGTGTTAGCATACGGACAG
ACTGGCTCAGGGAAAACCTTTACTATGGAAGGCGGTCTTGACCTCGACCT
CAATCGCTCGAGTACTAAGGATTCTGCGAATAACCTCTCCCCGTCCAAGA
TTTCAGATGATCCTGTCCTGTGTATTGGCAACTTGGGCATCATTCCCCGT
GCAGTGCACACAATATTTCGAGAGGGTGACGCTGGAGGGACGCGGAGAAT
TTGGGTATACGTGTCTCACATGGAGATCTACAACGAGAGACTCTTCGACC
TTCTTGCTGCATCA
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