mRNA_H-elongata_contig8756.16289.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8756.16289.1 vs. uniprot
Match: D8LM21_ECTSI (Stn1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM21_ECTSI) HSP 1 Score: 444 bits (1143), Expect = 5.040e-149 Identity = 226/349 (64.76%), Postives = 267/349 (76.50%), Query Frame = 1
Query: 1 SHVKLLARDVHGLGTIEGIDDSHVLQ-NKVIQRVEIVGVIVHIKPGATKSFGSYVKYVLDDGTGLVPCTQYERNASDGALRQGYTQRHELGDLLVVQGKLKRFRRAREVVISSARSPIDPNEEILHWLRCMELAKNIYKPPFRRDEYVDDDLVVSSNQARPSRCDCGAAYAERVGYCRCIAAPLALDPEFEFRDALFTHLAAMEERLP-PGEYLYVQFARDVRDDPILRETAARVVSKVRSGECLGGGGRGGGWRMDKIFDAKVIELLRAVMSSLYRDGALHFSDRTEDVYVLVSRGRVLQPGVEAVCRGRGLRLTQENEIVRALQESALFHHVPGSRIRACVHRMKRS 1041
S+VKLL RDVHGLGT+ GIDDSHVL NK I RVE+ GV+VH+KPGATK+ GSYVKY+LDDGTGL+PCTQYER+A GA +G+++RHELG+LLVVQGKLKR+R AREV I+SA P DPN+E LHWLRC+EL K +Y+PPF+RD+Y+D++LV S+QARP++C CGAAYAE VGYCRC+AAPLALDP FEFRDAL LAA EE L P E+L QFARD +G RG + AK +ELLRAVMSSL+RDGALHF DR DVYVLVSRGRVL+P VE CR R L L+QENEI+RALQ SAL HHVPG+RIRACV+RMK++
Sbjct: 56 SYVKLLIRDVHGLGTLGGIDDSHVLHGNKAIHRVEVSGVVVHVKPGATKASGSYVKYILDDGTGLLPCTQYERHAGTGATHRGHSERHELGELLVVQGKLKRYRGAREVAITSASKPTDPNQEALHWLRCVELGKTVYRPPFQRDDYIDEELVAGSSQARPTQCGCGAAYAEAVGYCRCVAAPLALDPTFEFRDALLARLAAKEESLAGPDEHLRFQFARD---------------RPAEAGAAAAAAPRG------VMQQAKALELLRAVMSSLHRDGALHFLDRARDVYVLVSRGRVLRPAVEEACRRRRLGLSQENEIIRALQGSALLHHVPGARIRACVYRMKKA 383
BLAST of mRNA_H-elongata_contig8756.16289.1 vs. uniprot
Match: A0A8J5RZ04_ZIZPA (OB domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5RZ04_ZIZPA) HSP 1 Score: 79.3 bits (194), Expect = 1.090e-13 Identity = 51/152 (33.55%), Postives = 78/152 (51.32%), Query Frame = 1
Query: 4 HVKLLARDVHGLGTIEGIDDSHVLQNKVIQRVEIVGVIVHIKPGATKSFGSYVKYVLDDGTGLVPCT-----QY-ERNASDGA--------LRQGYTQRHELGDLLVVQGKLKRFRRAREVVISSARSPIDPNEEILHWLRCMELAKNIYKP 417
H+KLLA D+ L S V + + RVEIVGV+V + ++++++DDGTG VPC QY N S GA + ++ LG LL V+G++ +R A ++ + +PN E+LHWL+C+ +AK Y P
Sbjct: 8 HIKLLAADLLSLTCRHTSPPSFVRCGRTVARVEIVGVVV-----SRDRRDKFLRFLVDDGTGCVPCVLWLNHQYLNANRSSGASVSDPTAEMALKMSEMVNLGGLLRVRGRIVLYRGAIQITVRDVVLEKNPNVEVLHWLQCVSMAKECYDP 154
BLAST of mRNA_H-elongata_contig8756.16289.1 vs. uniprot
Match: I1H564_BRADI (OB domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1H564_BRADI) HSP 1 Score: 79.0 bits (193), Expect = 1.480e-13 Identity = 52/153 (33.99%), Postives = 79/153 (51.63%), Query Frame = 1
Query: 4 HVKLLARDVHGLGTIEGIDDSHVLQNKVIQRVEIVGVIVHIKPGATKSFGSYVKYVLDDGTGLVPCT-----QY-ERNASDGALRQGYT-----QRHE---LGDLLVVQGKLKRFRRAREVVISSARSPIDPNEEILHWLRCMELAKNIYKPP 420
HVKLLA D+ L S + +++ R E+VGV+V + ++++++DDGTG VPC QY N+S G L T Q E LG LL V+G++ +R A ++ + DPN E+LHWL+C+ +AK + P
Sbjct: 8 HVKLLAADLLSLTLRHTSPPSFAHRGRIVARAEVVGVVV-----SRDRREKFLRFLIDDGTGCVPCVLWLNHQYLNANSSSGTLDTDPTGEMALQMSEVVHLGTLLRVRGRIVMYRGAMQIAVRDVILEKDPNVELLHWLQCVHMAKECFDFP 155
BLAST of mRNA_H-elongata_contig8756.16289.1 vs. uniprot
Match: A0A2G5CIW5_AQUCA (OB domain-containing protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CIW5_AQUCA) HSP 1 Score: 79.0 bits (193), Expect = 3.180e-13 Identity = 56/166 (33.73%), Postives = 80/166 (48.19%), Query Frame = 1
Query: 1 SHVKLLARDVHGLG--TIEGIDDSHVL--QNKVIQRVEIVGVIVHIKPGATKSFGSYVKYVLDDGTGLVPCTQY----------ERNASDGAL----RQGYTQRHELGDLLVVQGKLKRFRRAREVVISSARSPIDPNEEILHWLRCMELAKNIY-----KPPFRR 429
+ VKLLA D L ++ D + + K I R+E VGV+V + Y+K+++DDGTG + C + RN SD L Q Y +LG L V+G++ FR ++ + DPN EILHWL C+ LA+N Y +PP RR
Sbjct: 4 TRVKLLASDFLTLTPYSLSSSSDPTMFFRKGKQITRIETVGVVV----SRERKGDRYLKFIIDDGTGCISCILWLNQLNSTYFARRNPSDVRLIADMAQDYATSIQLGVLARVRGRVTGFRGVLQITVDDVFLERDPNAEILHWLNCVNLARNFYDVPTVRPPLRR 165
BLAST of mRNA_H-elongata_contig8756.16289.1 vs. uniprot
Match: A0A1Y1I7J1_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I7J1_KLENI) HSP 1 Score: 77.8 bits (190), Expect = 1.070e-12 Identity = 46/153 (30.07%), Postives = 81/153 (52.94%), Query Frame = 1
Query: 1 SHVKLLARDVHGLGTIEGIDDSHVLQNKVIQRVEIVGVIVHIKPGATKSFGSYVKYVLDDGTGLVPCTQY-------------ERNASDGALRQGYTQR--HEL--GDLLVVQGKLKRFRRAREVVISSARSPIDPNEEILHWLRCMELAKNI 408
+H+ LLA DV L + G+ S L+ + ++RVE++GV V ++ + + ++DDGTGLVP + R+A + + + HEL G L+ VQG++ ++R R+V + + + +PN E+LHWL C+ + K +
Sbjct: 54 AHIPLLAADVEALQEVPGVPGSFALRGQPVRRVEVLGVAVEVECRDKSA-----RCIVDDGTGLVPAILWLQPNGASSDAPEDSRHAVAAGVETAFAIKAAHELQLGRLVRVQGRVTQYRGVRQVTVDALQVENNPNAEVLHWLDCIRMKKQL 201
BLAST of mRNA_H-elongata_contig8756.16289.1 vs. uniprot
Match: A0A7I8IHQ6_SPIIN (Hypothetical protein n=3 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8IHQ6_SPIIN) HSP 1 Score: 76.3 bits (186), Expect = 2.000e-12 Identity = 50/158 (31.65%), Postives = 80/158 (50.63%), Query Frame = 1
Query: 1 SHVKLLARDVHGLGTIEGIDDSHVLQN-KVIQRVEIVGVIVHIKPGATKSFGSYVKYVLDDGTGLVPCTQYERN--------ASDGALRQ---------GYTQRHELGDLLVVQGKLKRFRRAREVVISSARSPIDPNEEILHWLRCMELAKNIYKPP 420
+HVKLLAR++ GL G S + + + R E VGV+V A + ++++LDDGTG +PC + + + A RQ G+ R ++G L+ V+G+L FR ++ + + DPN E LHWL+C+ LA+ + P
Sbjct: 7 AHVKLLARELLGLA---GRSASFCMAGGRAVSRAEAVGVVV-----AWERREKLIRFLLDDGTGCIPCVLWLNHRLLAGRPPGATAAPRQSLATWRAAPGHASRAQMGALVRVRGRLTAFRGTLQLTVGGVVAERDPNAEALHWLQCLRLARRCHGRP 156
BLAST of mRNA_H-elongata_contig8756.16289.1 vs. uniprot
Match: A0A1J7GN78_LUPAN (OB domain-containing protein n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A1J7GN78_LUPAN) HSP 1 Score: 68.9 bits (167), Expect = 5.740e-10 Identity = 47/154 (30.52%), Postives = 76/154 (49.35%), Query Frame = 1
Query: 1 SHVKLLARDVHGLGTIEGIDDSHVLQNKVIQRVEIVGVIV--HIKPGATKSFGSYVKYVLDDGTGLVPCTQY-----------ERNASDGALRQGYTQRH----ELGDLLVVQGKLKRFRRAREVVISSARSPIDPNEEILHWLRCMELAKNIY 411
+HVKLLA D+ L + DS ++ + R E +G + KP +++++ +DDGTG VPC + R+ D L R ++G + V+G++ R+R A +V +S DPN E+LHW+ C+ LA+N Y
Sbjct: 10 THVKLLAFDLLSLS--QHSPDSFSRRSIPLSRAETLGTVTLRDHKPN------TFLRFAIDDGTGCVPCILWLNHLNSPYLARRRSPQDVRLIADLAARAAAVVKVGVVARVRGRISRYRGAVQVTVSDVMVERDPNAEVLHWIECVNLARNCY 155
BLAST of mRNA_H-elongata_contig8756.16289.1 vs. uniprot
Match: A0A835QKM4_VANPL (OB domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QKM4_VANPL) HSP 1 Score: 66.2 bits (160), Expect = 4.150e-9 Identity = 46/154 (29.87%), Postives = 75/154 (48.70%), Query Frame = 1
Query: 1 SHVKLLARDVHGLGTIEGIDDSHVLQNKVIQRVEIVGVIVHIKPGATKSFGSYVKYVLDDGTGLVPCTQY------ERNASDGALRQG--------YTQRHELGDLLVVQGKLKRFRRAREVVISSARSPIDPNEEILHWLRCMELAKNIYKPP 420
++VKLLA D L S + + + R E VGV+V + + ++LDDG+G VPC + R++S + + + + LG+L+ V+G++ FR ++ DPN EILHWLRC++LA++ Y P
Sbjct: 7 AYVKLLAGDFLALTISPLAPYSFSRRGRPVSRAEAVGVVVSLDRRP-----KLLHFLLDDGSGCVPCVIWLNDHLLPRSSSVASAARDLEVATVLEHAGKVRLGELVRVRGRVTVFRGELQITAKDVLVERDPNAEILHWLRCIKLARDCYDLP 155
BLAST of mRNA_H-elongata_contig8756.16289.1 vs. uniprot
Match: A0A2Z6MCU7_TRISU (OB domain-containing protein n=3 Tax=Trifolium TaxID=3898 RepID=A0A2Z6MCU7_TRISU) HSP 1 Score: 66.2 bits (160), Expect = 6.180e-9 Identity = 47/152 (30.92%), Postives = 71/152 (46.71%), Query Frame = 1
Query: 1 SHVKLLARDVHGLGTIEGIDDSHVLQNKVIQRVEIVGVIVHIKPGATKSFGSYVKYVLDDGTGLVPCTQY-----------ERNASDGALRQGYTQRH----ELGDLLVVQGKLKRFRRAREVVISSARSPIDPNEEILHWLRCMELAKNIY 411
+HVKLLA D L D ++ I R E +G IV +K ++++ +DDGTG +PC + R+ D L R ++G + V+GK+ F+ ++ +S DPN EILHW+ C+ LAKN Y
Sbjct: 16 THVKLLAFDFLTLTPPSSPDYPFTRKSIPITRAETLGTIVLRDHKPSK----FLRFAIDDGTGCIPCILWLNHMTSPHLARRRSPQDVCLLADAAARSAAMVKVGVVARVRGKVTGFKGGVQITVSDVFVERDPNVEILHWVECVNLAKNCY 163
BLAST of mRNA_H-elongata_contig8756.16289.1 vs. uniprot
Match: A0A6A4PVI6_LUPAL (Putative nucleic acid-binding protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4PVI6_LUPAL) HSP 1 Score: 65.1 bits (157), Expect = 1.260e-8 Identity = 45/156 (28.85%), Postives = 74/156 (47.44%), Query Frame = 1
Query: 1 SHVKLLARDVHGLGTIEGIDDSHVLQNKVI--QRVEIVGVIV--HIKPGATKSFGSYVKYVLDDGTGLVPCTQY-----------ERNASDGALRQGYTQRH----ELGDLLVVQGKLKRFRRAREVVISSARSPIDPNEEILHWLRCMELAKNIY 411
+HVKLLA D+ L SH + I R E +G + KP +++++ +DDGTG +PC + R+ D L R ++G + V+G++ R+R + ++ +S DPN E+LHW+ C+ LA+N Y
Sbjct: 10 THVKLLAFDLLSLTQ----HSSHTFSRRSIPLSRAETLGTVTLRDHKPN------TFLRFAIDDGTGCIPCILWLNHLNSPYLARRRSPQDVRLIADLAARAAAVIKVGVVARVRGRISRYRSSVQITVSDVMIERDPNAEMLHWIECVNLARNCY 155 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8756.16289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8756.16289.1 >prot_H-elongata_contig8756.16289.1 ID=prot_H-elongata_contig8756.16289.1|Name=mRNA_H-elongata_contig8756.16289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=220bp MELAKNIYKPPFRRDEYVDDDLVVSSNQARPSRCDCGAAYAERVGYCRCIback to top mRNA from alignment at H-elongata_contig8756:7030..9812+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8756.16289.1 ID=mRNA_H-elongata_contig8756.16289.1|Name=mRNA_H-elongata_contig8756.16289.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2783bp|location=Sequence derived from alignment at H-elongata_contig8756:7030..9812+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8756:7030..9812+ >mRNA_H-elongata_contig8756.16289.1 ID=mRNA_H-elongata_contig8756.16289.1|Name=mRNA_H-elongata_contig8756.16289.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1320bp|location=Sequence derived from alignment at H-elongata_contig8756:7030..9812+ (Himanthalia elongata Himel1 dioecious)back to top |