mRNA_H-elongata_contig87507.16286.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87507.16286.1
Unique NamemRNA_H-elongata_contig87507.16286.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig87507.16286.1 vs. uniprot
Match: A0A813A4A6_SYMMI (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813A4A6_SYMMI)

HSP 1 Score: 59.3 bits (142), Expect = 1.420e-8
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    1 QASFPILRLSAVSRLSHLLRTVPPSITHEASAFHDALIEWALASIIAGD----GTFTATLRQTHLPIRKGGLGLTSSDAVKGTAY 243
            Q+++ +L L A  R ++LLRTVPPS+T + +A HDA I   LA ++AG        + + R+  LP+R GGLGL+S+   +  AY
Sbjct:  124 QSAWMLLLLCAAPRCNYLLRTVPPSLTEDFAASHDAAISRCLAVLLAGGEEPLDLPSLSERRAQLPLRMGGLGLSSAREHRQAAY 208          
BLAST of mRNA_H-elongata_contig87507.16286.1 vs. uniprot
Match: A0A0D3IVF4_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A0D3IVF4_EMIHU)

HSP 1 Score: 58.9 bits (141), Expect = 2.900e-8
Identity = 30/84 (35.71%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   16 ILRLSAVSRLSHLLRTVPPSITHEASAFHDALIEWALASIIAG------DGTFTATLRQTHLPIRKGGLGLTSSDAVKGTAYIG 249
            +LR  + + L+  LRT+PPS+T +A+  HD L+E AL +++ G         +   ++Q  LP+R GG+GLTS+  ++  A++G
Sbjct:  207 LLRFCSNTTLTFFLRTMPPSVTQDAAREHDRLMEEALYTLVGGARVGRNSPRWRVAVQQARLPVRMGGMGLTSAMDIREAAWVG 290          
BLAST of mRNA_H-elongata_contig87507.16286.1 vs. uniprot
Match: A0A0D3JPK8_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A0D3JPK8_EMIHU)

HSP 1 Score: 58.9 bits (141), Expect = 2.990e-8
Identity = 30/84 (35.71%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   16 ILRLSAVSRLSHLLRTVPPSITHEASAFHDALIEWALASIIAG------DGTFTATLRQTHLPIRKGGLGLTSSDAVKGTAYIG 249
            +LR  + + L+  LRT+PPS+T +A+  HD L+E AL +++ G         +   ++Q  LP+R GG+GLTS+  ++  A++G
Sbjct:  498 LLRFCSNTTLTFFLRTMPPSVTQDAAREHDRLMEEALYTLVGGARVGRNSPRWRVAVQQARLPVRMGGMGLTSAMDIREAAWVG 581          
BLAST of mRNA_H-elongata_contig87507.16286.1 vs. uniprot
Match: A0A7S3WKE0_EMIHU (Hypothetical protein (Fragment) n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WKE0_EMIHU)

HSP 1 Score: 58.9 bits (141), Expect = 3.020e-8
Identity = 30/84 (35.71%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   16 ILRLSAVSRLSHLLRTVPPSITHEASAFHDALIEWALASIIAG------DGTFTATLRQTHLPIRKGGLGLTSSDAVKGTAYIG 249
            +LR  + + L+  LRT+PPS+T +A+  HD L+E AL +++ G         +   ++Q  LP+R GG+GLTS+  ++  A++G
Sbjct:  506 LLRFCSNTTLTFFLRTMPPSVTQDAAREHDRLMEEALYTLVGGARVGRNSPRWRVAVQQARLPVRMGGMGLTSAMDIREAAWVG 589          
BLAST of mRNA_H-elongata_contig87507.16286.1 vs. uniprot
Match: A0A1Q9DFD1_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DFD1_SYMMI)

HSP 1 Score: 58.2 bits (139), Expect = 3.400e-8
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    1 QASFPILRLSAVSRLSHLLRTVPPSITHEASAFHDALIEWALASIIAG--DGTFTATL--RQTHLPIRKGGLGLTSSDAVKGTAY 243
            Q+ + +L L A  R ++LLRTVPPS+  E +A HDA I   LA ++AG  D     +L  ++  LP+R GGLGL+S+   +  AY
Sbjct:  112 QSEWMLLLLFAAQRCNYLLRTVPPSLAEEFAASHDAAISRCLAVLLAGGEDSLDLPSLSEKRAQLPLRMGGLGLSSAREHRQAAY 196          
BLAST of mRNA_H-elongata_contig87507.16286.1 vs. uniprot
Match: A0A6H5KHJ5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ5_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 4.140e-8
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    1 QASFPILRLSAVSRLSHLLRTVPPSITHEASAFHDALIEWALASI 135
            QAS+ +LRLS VSRL HLLRT+ PSIT+ A+  HD L+ WA++ I
Sbjct:   40 QASYQLLRLSGVSRLFHLLRTIAPSITNTAAREHDNLMIWAVSKI 84          
BLAST of mRNA_H-elongata_contig87507.16286.1 vs. uniprot
Match: R1D8Y1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D8Y1_EMIHU)

HSP 1 Score: 57.0 bits (136), Expect = 1.410e-7
Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   16 ILRLSAVSRLSHLLRTVPPSITHEASAFHDALIEWALASIIAG------DGTFTATLRQTHLPIRKGGLGLTSSDAVKGTAYI 246
            +LR  + + L+  LRT+PPS+T +A+  HD L+E AL +++ G         +   ++Q  LP+R GG+GLTS+  ++  A++
Sbjct:   74 LLRFCSNTTLTFFLRTMPPSVTQDAAREHDRLMEEALYTLVGGARVGRNSPRWRVAVQQARLPVRMGGMGLTSAMDIREAAWV 156          
BLAST of mRNA_H-elongata_contig87507.16286.1 vs. uniprot
Match: A0A812WN29_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WN29_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 9.270e-7
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 1
Query:    1 QASFPILRLSAVSRLSHLLRTVPPSITHEASAFHDALIEWALASIIAGD----GTFTATLRQTHLPIRKGGLGLTSSDAVKGTAY 243
            Q+++ +L L A  R ++LL TVPPS+T E +A HDA I   LA ++ G        + + R+  LP+R G LGL+S  A +  AY
Sbjct:  261 QSAWMLLLLCAAPRCNYLLGTVPPSLTEEFAASHDAAISRCLAVLLVGGEEPLDLPSLSERRAQLPLRMGNLGLSSVRAHRQAAY 345          
BLAST of mRNA_H-elongata_contig87507.16286.1 vs. uniprot
Match: R1DAT8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DAT8_EMIHU)

HSP 1 Score: 53.5 bits (127), Expect = 2.320e-6
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   13 PILRLSAVSRLSHLLRTVPPSITHEASAFHDALIEWALASIIAGDGTFTATLR------QTHLPIRKGGLGLTSSDAVKGTAYIG 249
            P+  LS  + L+  LR +PPS+T  A+  HD LI+ AL  ++ G     A  R      Q  LP++ GG+GLTS+  ++  A+IG
Sbjct:  237 PLPALSRNTTLTFFLRAMPPSVTLPAAERHDELIDAALYKLVGGARVGAAGTRWERACKQARLPVKMGGMGLTSAVDIREPAWIG 321          
BLAST of mRNA_H-elongata_contig87507.16286.1 vs. uniprot
Match: A0A1Q9D5Z6_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9D5Z6_SYMMI)

HSP 1 Score: 52.4 bits (124), Expect = 6.230e-6
Identity = 31/82 (37.80%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    1 QASFPILRLSAVSRLSHLLRTVPPSITHEASAFHDALIEWALASII-AGDGTFTATLRQTHLPIRKGGLGLTSSDAVKGTAY 243
            QA++ +L   A  R ++LLR VPP++T + +A HDA +   L S++  GD    A  + + L +  GGLGL S+ A +  AY
Sbjct:  780 QAAWLLLHFCAAPRANYLLRNVPPALTAQFAADHDAAVATCLGSLVHCGDHMPAAATQASQLALGFGGLGLRSAAADRQAAY 861          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87507.16286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A813A4A6_SYMMI1.420e-841.18Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]
A0A0D3IVF4_EMIHU2.900e-835.71Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A0D3JPK8_EMIHU2.990e-835.71Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S3WKE0_EMIHU3.020e-835.71Hypothetical protein (Fragment) n=3 Tax=Emiliania ... [more]
A0A1Q9DFD1_SYMMI3.400e-842.35Uncharacterized protein n=2 Tax=Symbiodinium TaxID... [more]
A0A6H5KHJ5_9PHAE4.140e-860.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
R1D8Y1_EMIHU1.410e-734.94Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A812WN29_9DINO9.270e-740.00Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
R1DAT8_EMIHU2.320e-637.65Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A1Q9D5Z6_SYMMI6.230e-637.80Uncharacterized protein n=2 Tax=Symbiodinium TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87507contigH-elongata_contig87507:2237..2557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931276.1920419-CDS-H-elongata_contig87507:2236..23221622931276.1920419-CDS-H-elongata_contig87507:2236..2322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87507 2237..2322 -
1691679769.8325148-CDS-H-elongata_contig87507:2236..23221691679769.8325148-CDS-H-elongata_contig87507:2236..2322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87507 2237..2322 -
1622931276.2034078-CDS-H-elongata_contig87507:2394..25571622931276.2034078-CDS-H-elongata_contig87507:2394..2557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87507 2395..2557 -
1691679769.84239-CDS-H-elongata_contig87507:2394..25571691679769.84239-CDS-H-elongata_contig87507:2394..2557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87507 2395..2557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87507.16286.1prot_H-elongata_contig87507.16286.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87507 2237..2557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87507.16286.1

>prot_H-elongata_contig87507.16286.1 ID=prot_H-elongata_contig87507.16286.1|Name=mRNA_H-elongata_contig87507.16286.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
QASFPILRLSAVSRLSHLLRTVPPSITHEASAFHDALIEWALASIIAGDG
TFTATLRQTHLPIRKGGLGLTSSDAVKGTAYIG
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mRNA from alignment at H-elongata_contig87507:2237..2557-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87507.16286.1 ID=mRNA_H-elongata_contig87507.16286.1|Name=mRNA_H-elongata_contig87507.16286.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig87507:2237..2557- (Himanthalia elongata Himel1 dioecious)
CAGGCGAGCTTTCCGATTCTGCGCTTGTCTGCAGTTTCCCGTCTGTCACA CCTCCTCCGCACAGTCCCACCCTCCATCACACACGAGGCCTCCGCGTTCC ACGACGCTCTAATAGAGTGGGCGTTGGCGTCCATCATAGCTGGTGACGGA ACTTTTACGGCGAGTCTGCCAACTCCAGAGAAGGTAGCTCAAGATCCTAG TGTATGAAAAAACCAGACTTACCTGAGATATGAAGCTCTTCGCCAGACCC ATCTTCCTATTCGAAAAGGTGGCCTAGGACTTACCAGCAGTGATGCGGTC AAAGGCACAGCCTACATTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig87507:2237..2557-

>mRNA_H-elongata_contig87507.16286.1 ID=mRNA_H-elongata_contig87507.16286.1|Name=mRNA_H-elongata_contig87507.16286.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig87507:2237..2557- (Himanthalia elongata Himel1 dioecious)
CAGGCGAGCTTTCCGATTCTGCGCTTGTCTGCAGTTTCCCGTCTGTCACA
CCTCCTCCGCACAGTCCCACCCTCCATCACACACGAGGCCTCCGCGTTCC
ACGACGCTCTAATAGAGTGGGCGTTGGCGTCCATCATAGCTGGTGACGGA
ACTTTTACGGCGACAGGCGAGCTTTCCGATTCTGCGCTTGTCTGCAGTTT
CCCGTCTGTCACACCTCCTCCGCACAGTCCCACCCTCCATCACACACGAG
GCCTCCGCGTTCCACGACGCTCTAATAGAGTGGGCGTTGGCGTCCATCAT
AGCTGGTGACGGAACTTTTACGGCGACTCTTCGCCAGACCCATCTTCCTA
TTCGAAAAGGTGGCCTAGGACTTACCAGCAGTGATGCGGTCAAAGGCACA
GCCTACATTGGTCTCTTCGCCAGACCCATCTTCCTATTCGAAAAGGTGGC
CTAGGACTTACCAGCAGTGATGCGGTCAAAGGCACAGCCTACATTGGT
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