prot_H-elongata_contig875.16285.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig875.16285.1
Unique Nameprot_H-elongata_contig875.16285.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length651
Homology
BLAST of mRNA_H-elongata_contig875.16285.1 vs. uniprot
Match: A0A6H5JGQ1_9PHAE (Transcription initiation factor TFIID subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ1_9PHAE)

HSP 1 Score: 607 bits (1566), Expect = 5.340e-209
Identity = 333/526 (63.31%), Postives = 387/526 (73.57%), Query Frame = 0
Query:    3 ATVMARRTELKIQVSPMCRKVPEHPPALPISAPPAARARREETVRLIEKSREAMEKRRDAKRLQGVKPRTNGIQASRAVPDISR-SPAHPSHSSLANGFGAAVGMKRNLYEDDTGEAGEAGEATTEAERQLQREENARVLCVEVEWLLEHPRSGIVFKRATLEDQFSASHAYTTYSNAPIDFDGPRCWFPCLDHPSLLIAYDVEVVVSSPKIIAVFNGKLLEKTSTDDEEG--------GGI-----------SIVYRFATETLTTARALGLAVGRFGEWDVPQSPRVKGVFLRAANAGVPSAIAKNVEGMKSRDRRAADKSTSAALANLLAHVPLAVSFLEDWLKAEYPFKRCTYVFVEGLSELFSPFGSLCLVKAELLVRAQDRIPEGDLPGDAKLSVVEVLLYGWVSTALRLEGGKHRWLLHGIAGYLLTQFAAEFRGEEEKQHRLWRAMQRVVALDCDLGCPSMCPPTPDLYIPDVIDPATAYYTRLKAALILHMIEVKLQPTDLQDALGQLMVPIALHVRD 508
            A+  +   ELKIQV    +K+P+ PP    +AP AARARR+ET RLI KSR+ +E+RR+ KR QG +   +G       P+IS  SPAHPS  S AN   +   M      DD    G    AT EA RQ +REE+A+V+CVEVEW L HPRSG+VFK A   + FSA+H YTTYS+AP+D DGPRCWFPC+DH S+LI+YDV V V+SPKI A FNG+LLE T+ DD++G        GG            S  YRF+TETLT ARA+GLAVGRF  WDVP SPRVKG+ L+AA+AG           MKS  RRA D S  AA  +LLAHVP AVSFLEDWLKA+YPFKRCT VFVEGL ++F+PFGSLCL+KAELL    DRIP+GDLPGDA+LS VEVLLYGWVSTALRLEGGKHRWL+HGIAG+LLT+FAAE RGEEEKQHRLWRA+Q+ VALDCDLGCPS+ PPTPDLYIPD IDPATAYY RLKA LILHM EVK+QP D+QDALG +M PIALHVRD
Sbjct:  102 ASSQSNNGELKIQVPANSQKIPQLPPE---TAPSAARARRDETARLIHKSRQ-VEERRETKRKQGSR---SGFAPQ--SPEISMMSPAHPSPGSNAN-MDSPAPMDVADSSDDDNYDGHVESATVEAHRQRKREEHAKVICVEVEWELLHPRSGVVFKAA--REGFSANHMYTTYSHAPMDMDGPRCWFPCVDHASILISYDVTVRVASPKITAAFNGRLLESTTLDDDDGXXXXXXANGGTDGMAVRKRTSYSTCYRFSTETLTAARAVGLAVGRFAAWDVPHSPRVKGLVLKAASAGGGGRAGT----MKSERRRAVDNSLIAAAGSLLAHVPAAVSFLEDWLKADYPFKRCTQVFVEGLPDVFAPFGSLCLLKAELLCTEDDRIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHGIAGHLLTKFAAELRGEEEKQHRLWRAVQKAVALDCDLGCPSISPPTPDLYIPDAIDPATAYYARLKAVLILHMAEVKVQPADMQDALGSVMRPIALHVRD 611          
BLAST of mRNA_H-elongata_contig875.16285.1 vs. uniprot
Match: D7G4X2_ECTSI (Transcription initiation factor TFIID subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X2_ECTSI)

HSP 1 Score: 622 bits (1603), Expect = 3.300e-204
Identity = 350/562 (62.28%), Postives = 404/562 (71.89%), Query Frame = 0
Query:    3 ATVMARRTELKIQVSPMCRKVPEHPPALPISAPPAARARREETVRLIEKSREAMEKRRDAKRLQGVKPRTNGIQASRAVPDISR-SPAHPSHSSLANGFGAAVGMKRNLYEDDTGEAGEAGEATTEAERQLQREENARVLCVEVEWLLEHPRSGIVFKRATLEDQFSASHAYTTYSNAPIDFDGPRCWFPCLDHPSLLIAYDVEVVVSSPKIIAVFNGKLLEKTSTDDE---------EGG----------GISIVYRFATETLTTARALGLAVGRFGEWDVPQSPRVKGVFLRAANAGVPSAIAKNVEGMKSRDRRAADKSTSAALANLLAHVPLAVSFLEDWLKAEYPFKRCTYVFVEGLSELFSPFGSLCLVKAELLVRAQDRIPEGDLPGDAKLSVVEVLLYGWVSTALRLEGGKHRWLLHGIAGYLLTQFAAEFRGEEEKQHRLWRAMQRVVALDCDLGCPSMCPPTPDLYIPDVIDPATAYYTRLKAALILHMIEVKLQPTDLQDALGQLMVPIALHVRDE--DPFLRRQ----------SSFSQGQLMRQASASA 532
            A+  +   ELKIQV    +K+P+ PP LP +AP AARARR+ET RLI KSR+ +E+RR+AKR QG +   +G       P+IS  SPAHPS  S AN   +   M      DD    G    AT EA RQ +REE+A+V+CVEVEW L HPRSG+VFK A   + FSA+H YTTYS+AP+D DGPRCWFPC+DH S+LI+YDV V V+SPKI A FNG+LLE  + DD+          GG            S  YRF+TETLT ARA+GLAVGRF  WDVPQSPRVKG+ LRAA+AG           MKS  RRA D S  A   +LLAHVP AVSFLEDWLKA+YPFKRCT VFVEGL ++F+PFGSLCL+KAELL    DRIP+GDLPGDA+LS VEVLLYGWVSTALRLEGGKHRWL+HGIAG+LLT+FAAE RGEEEKQHRLW A+Q+ VALDCDLGCPS+ PPT DLYIPD IDPATAYY RLKA LILHM EVK+QP D+QDALG +M PIALHVR+E  D  LRRQ          SS SQGQL RQASA +
Sbjct:  102 ASSQSNNGELKIQVPANSKKIPQLPPDLPETAPSAARARRDETARLIHKSRQ-VEERREAKRKQGSR---SGFAPQ--SPEISMMSPAHPSPGSNAN-MDSPAPMDVADSSDDDNYDGHVESATVEAHRQRKREEHAKVICVEVEWELLHPRSGVVFKAA--REGFSANHMYTTYSHAPMDMDGPRCWFPCVDHASILISYDVTVRVASPKITAAFNGRLLESITLDDDXXXXGDVGVNGGTDGMAVGKRTSYSTCYRFSTETLTAARAVGLAVGRFAAWDVPQSPRVKGLVLRAASAGGGGRSGT----MKSERRRAVDNSLIAGAGSLLAHVPAAVSFLEDWLKADYPFKRCTQVFVEGLPDVFAPFGSLCLLKAELLCTEDDRIPDGDLPGDARLSAVEVLLYGWVSTALRLEGGKHRWLVHGIAGHLLTKFAAELRGEEEKQHRLWCAVQKAVALDCDLGCPSISPPTADLYIPDAIDPATAYYARLKAVLILHMAEVKVQPADMQDALGSVMRPIALHVREEKADLALRRQTSTFSLSRQPSSLSQGQLSRQASADS 650          
BLAST of mRNA_H-elongata_contig875.16285.1 vs. uniprot
Match: A0A836CI26_9STRA (Transcription initiation factor TFIID subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI26_9STRA)

HSP 1 Score: 152 bits (385), Expect = 8.110e-35
Identity = 120/429 (27.97%), Postives = 166/429 (38.69%), Query Frame = 0
Query:  170 SHAYTTYSNAPIDFDGPRCWFPCLDHPSLLIAYDVEVVVSSPKIIAVFNGKLLEKTSTDDEEGGGISIVY--------------------------------RFATETLTTARALGLAVGRFGEWDVPQSPRVKGVFL-------RAANAGVPSAIAKNVEGMKSRDRRAADKSTSAALANLLAHVPLAVSFLEDWLKAEYPFKRCTYVFVEGLSELFSPFGSLCLVKAELLVRAQD-------RIPEGDLPGDAKLSVVEVLLY----------------------------------------GWVSTALRLEGGKHRWLLHGIAGYLLTQFAAEFRGEEEKQ---------HRLWRAMQRVVALDCDLGCPSMCPPTPDLYIPDVIDPATAYYTRLKAALILHMIEVKLQPTDLQDALGQLMVPIA 503
            +H  TTY++  +D DGPRCWFPC+D P+    +  E+V+  P                                                             FAT+T TTAR +GLAVG F  W  P +PR+ G +L                                  +  +  +A  LA +   V+F ++WL  +YPF+  T+VFV GL    +PFG L L++ ELL            R+P+ +  GD   +V E LL                                         GW  TALRL     RWL H  AGY+L  +    RG +  Q          RLWR M+ V+A D +LG  S+ PP   LY P+ ++   A  TR KAAL+L M+  ++    LQ AL   M  +A
Sbjct:  185 AHCRTTYAHGAVDVDGPRCWFPCVDAPAQSCVF--ELVLDLPSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXPLPRARRLHFATDTCTTARGVGLAVGPFQHWVDPLAPRLHGYYLVPDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDRAEQVARTLAALRSVVTFAQEWLNVDYPFQTATHVFVGGLEGRHAPFGGLVLLRDELLCPIDPCAHAPPPRLPDDNAHGDTHAAVAEGLLLDKLLSPPSRPPLCXXXXXXXXXXXXXXXXXXXXXXXXXXLGWAQTALRLAHSFERWLHHAFAGYMLELYIEAKRGRDVAQVTARSDAQYARLWRLMEAVIARDAELGGASIRPPDAALYAPEALERGVARLTRAKAALLLLMLRARIGRDALQRALRARMDALA 611          
BLAST of mRNA_H-elongata_contig875.16285.1 vs. uniprot
Match: A0A183IML7_9BILA (Transcription initiation factor TFIID subunit 2 n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IML7_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 5.580e-5
Identity = 90/406 (22.17%), Postives = 150/406 (36.95%), Query Frame = 0
Query:  139 RVLCVEVEWLLEHPRSGIVF----------KRATLEDQFSASHAYTTYSNAPIDFDGPRCWFPCLDHPSLLIAYDVEVVVSSPKIIAVFNGKLLEKTSTDDEEGGGISIVYRFATETLTTARALGLAVGRFGEWDVPQSPRVKGVFLRAANAGVPSAIAKNVEGMKSRDRRAADKSTSAALANLLAHVPLAVSFLEDWLKAEYPFKRCTYVFVEGLSELFSPFGSLCLVKAELLVRAQDRIPEGDLPGDAKLSVVEVLLYGWVS--TALRLEGG--------------KHRWLLHGIAGYLLTQFAAEFRGEEEKQHRLWRAMQRVVALDCDLGCPSMCPP----TPDLYIPDVIDPATA---YYTRL--KAALILHMIEVKLQPTDLQDALGQLMVPIALHVRDE 509
            +V+ V +++ LE+P  G  F            ++  D  + SH Y+ +  A  +    R WFPC+D PS L  + +EV       IAV +G L+   +T+  +       Y +     T A  +G AVG F  +  P+   +       +N   P  +                      L++    +  A  F E+ L   YP+     VFV  + E    + SL L+    L   +  I +  +        V    +G V     ++ +G               K RWL  G A Y+   +   F G  E  + ++  +  V   +   G   +  P    T   +  D ++P T    Y   L  KA+L+  M+E KL        L +L+  +  HV  +
Sbjct:  131 KVIRVGIDFRLENPTVGCNFVCPVLPSDMPSTSSSSDGLANSHVYS-WKRAEYE---ARAWFPCIDVPSELCTWKIEVTCDR-SFIAVCSGDLMGVGNTNGRD------TYSYQVTIPTPACNIGFAVGHFKLFVHPEMNEL-------SNFCPPDLL--------------------PLLSHTCKKLHKAFEFFEELLSFRYPYSSYKLVFVNDIPEDMISYLSLTLMDVRFL-HHKTIIEQEPVVRSLMARAVAQQFFGIVCFYCIVKHDGDVCTVAGCYVMPYNWKDRWLAWGAADYISRLYVQRFFGNNEYLYTIYELLNDVTHYEKKFGGIVLSGPKGQRTASGFYFDPLNPFTCSPLYVEMLVKKASLVFRMLEKKLGKELFFQVLNKLLT-VGAHVTQQ 496          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig875.16285.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGQ1_9PHAE5.340e-20963.31Transcription initiation factor TFIID subunit 2 n=... [more]
D7G4X2_ECTSI3.300e-20462.28Transcription initiation factor TFIID subunit 2 n=... [more]
A0A836CI26_9STRA8.110e-3527.97Transcription initiation factor TFIID subunit 2 n=... [more]
A0A183IML7_9BILA5.580e-522.17Transcription initiation factor TFIID subunit 2 n=... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042097Aminopeptidase N-like , N-terminalGENE3D2.60.40.1730coord: 109..257
e-value: 5.4E-8
score: 35.4
NoneNo IPR availableGENE3D1.10.390.60coord: 298..528
e-value: 1.2E-10
score: 43.1
NoneNo IPR availableSUPERFAMILY63737Leukotriene A4 hydrolase N-terminal domaincoord: 135..257
IPR037813Transcription initiation factor TFIID subunit 2PANTHERPTHR15137TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 119..501

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig875contigH-elongata_contig875:8502..15088 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig875.16285.1mRNA_H-elongata_contig875.16285.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig875 337..16052 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig875.16285.1 ID=prot_H-elongata_contig875.16285.1|Name=mRNA_H-elongata_contig875.16285.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=651bp
MTATVMARRTELKIQVSPMCRKVPEHPPALPISAPPAARARREETVRLIE
KSREAMEKRRDAKRLQGVKPRTNGIQASRAVPDISRSPAHPSHSSLANGF
GAAVGMKRNLYEDDTGEAGEAGEATTEAERQLQREENARVLCVEVEWLLE
HPRSGIVFKRATLEDQFSASHAYTTYSNAPIDFDGPRCWFPCLDHPSLLI
AYDVEVVVSSPKIIAVFNGKLLEKTSTDDEEGGGISIVYRFATETLTTAR
ALGLAVGRFGEWDVPQSPRVKGVFLRAANAGVPSAIAKNVEGMKSRDRRA
ADKSTSAALANLLAHVPLAVSFLEDWLKAEYPFKRCTYVFVEGLSELFSP
FGSLCLVKAELLVRAQDRIPEGDLPGDAKLSVVEVLLYGWVSTALRLEGG
KHRWLLHGIAGYLLTQFAAEFRGEEEKQHRLWRAMQRVVALDCDLGCPSM
CPPTPDLYIPDVIDPATAYYTRLKAALILHMIEVKLQPTDLQDALGQLMV
PIALHVRDEDPFLRRQSSFSQGQLMRQASASAKHIDFRGCYRYSNCERRW
RRCRGGGNQRHSGRYWRPFHAAADRHGLHAVGADGCSKGRSRPGQGPDGV
LLPTVGNRAVRALSESRLPPQEKGQRHQPRGGAGGTPLDGGHCLPRSPDG
*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042097Aminopeptidase_N-like_N
IPR037813TAF2