mRNA_H-elongata_contig87451.16279.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 264 bits (675), Expect = 7.340e-84 Identity = 119/162 (73.46%), Postives = 148/162 (91.36%), Query Frame = 1
Query: 25 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 510
+V +WD S +GPD +E DGRSY+SAVSEVI + S+TC+GRAK++MGEARMDIEDSEMGYLGY+ S+SYGLTWKVRGFC++K+N ++F++V+VYGNIY+SDIHHN+FG+YTYGHQQGDWR + M DN+GYGFDPHDDSD++TIHDN VY+N YHGIIAS+RCN
Sbjct: 153 KVFAWDTSINGPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCN 314
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 261 bits (666), Expect = 1.160e-83 Identity = 118/162 (72.84%), Postives = 143/162 (88.27%), Query Frame = 1
Query: 25 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 510
+V SWD ST+ PD +ETDGRSYISA+SE+I + ETC+G AK+ MGEARMDIE SE+GYLGY+ S+SYGLTWKVRGFC +K+N E+FD+V+VYGN+Y+SDIHH +FG+YTYGHQQGDWR + M DN+GYGFDPHDDSD++TIHDN VYNN YHGIIAS+RCN
Sbjct: 156 KVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCN 317
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 261 bits (666), Expect = 2.080e-82 Identity = 118/162 (72.84%), Postives = 143/162 (88.27%), Query Frame = 1
Query: 25 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 510
+V SWD ST+ PD +ETDGRSYISA+SE+I + ETC+G AK+ MGEARMDIE SE+GYLGY+ S+SYGLTWKVRGFC +K+N E+FD+V+VYGN+Y+SDIHH +FG+YTYGHQQGDWR + M DN+GYGFDPHDDSD++TIHDN VYNN YHGIIAS+RCN
Sbjct: 156 KVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCN 317
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 257 bits (656), Expect = 2.630e-81 Identity = 116/162 (71.60%), Postives = 145/162 (89.51%), Query Frame = 1
Query: 25 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 510
+V +WD S + PD +E+DGRSYISAVSEVI + +TC+GRAK++MGEARMDIE+SEM YLGY+ +++YGLTWKVRGFC++K N E+FD+V+VYGNIY+SDIHHN+FG+YTYGHQQGDWR + M DN+GYGFDPHDDSD++TIHDN V+NN YHGIIAS+RCN
Sbjct: 127 KVFAWDTSKNAPDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVWNNGYHGIIASKRCN 288
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 258 bits (658), Expect = 3.650e-81 Identity = 118/162 (72.84%), Postives = 142/162 (87.65%), Query Frame = 1
Query: 25 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 510
+V SWD ST+ PD +ETDGRSYISAVSE++ + ETC+G AK+ MGEARMDIE+SE+GYLG+ S+SYGLTWKVRGFC +K+N EIFD+V+VYGN+Y+SDIHH FG+YTYGHQQGDWR + M DN+GYGFDPHDDSD++TIHDN VYNN YHGIIAS+RCN
Sbjct: 160 KVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCN 321
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE) HSP 1 Score: 249 bits (635), Expect = 9.380e-81 Identity = 115/164 (70.12%), Postives = 140/164 (85.37%), Query Frame = 1
Query: 25 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHG--IIASRRCN 510
+V SWD ST+ PD +ETDGRSYISA+SE+I + ETC+G AK+ MGEARMDIE SE+GYLGY+ S+SYGLTWKVRGFC +K+N E+FD+V+VYGN+Y+SDIHH +FG+YTYGHQQGDWR + M DN+GYGFDPHDDSD++TIHDN VYNN YHG + SRR N
Sbjct: 50 KVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGEAAVRSRRTN 213
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 239 bits (609), Expect = 7.870e-76 Identity = 110/154 (71.43%), Postives = 132/154 (85.71%), Query Frame = 1
Query: 25 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHG 486
+V SWD ST+ PD +ETDGRSYISA+SE+I + ETC+G AK+ MGEARMDIE+SE+GYLG+ S+SYGLTWKVRGFC +K+N IFDEV+VYGN+Y+SDIHH FG+YTYGHQQGDWR + M DN+GYGFDPHDDSD++TIHDN VYNN HG
Sbjct: 159 KVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGNHG 312
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: D8LD45_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI) HSP 1 Score: 243 bits (619), Expect = 1.640e-74 Identity = 106/162 (65.43%), Postives = 144/162 (88.89%), Query Frame = 1
Query: 25 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 510
+V WD + + D++ETDGRSYISAVSE++++ ++TC+G AK+ MGEARMDI +SEMGY+G++ S+SYGLTWKVRGFC +K+N E+FD+V+VYGNIY+S++HH +F +YTYGHQQGDWR +T+ N+GYG+DPHDDSD++TIHDNVVY+N++HGIIAS+RCN
Sbjct: 245 KVFGWDTTNNSYDMDETDGRSYISAVSEIVLDPTQTCEGNAKNTMGEARMDIVNSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEVFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTVHSNSGYGYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCN 406
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA) HSP 1 Score: 239 bits (611), Expect = 2.860e-74 Identity = 111/162 (68.52%), Postives = 135/162 (83.33%), Query Frame = 1
Query: 25 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 510
+V +WD S + +++ GRSYISAVSEVI ++ + CDGRAK +MGEARMDIEDSEM YLGY+ S+SYGLTWKVRG C + +N E+FD V+VYGNIY+SDIHHN+FG+YTYGH+QGDWR + M NT YGFDPHDDSD++TIHDN VYNN HGIIAS+RCN
Sbjct: 153 KVFAWDTSKNKVRTDDSKGRSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDAVNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTEYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCN 314
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE) HSP 1 Score: 218 bits (554), Expect = 9.760e-68 Identity = 98/135 (72.59%), Postives = 115/135 (85.19%), Query Frame = 1
Query: 106 EVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 510
E+I ++ E C+G+AK MGEARMDIEDSEM YLGY S+SYGLTWKVRGFC + +N E+FDEV+VYGNIY+SDIHHNHFG+YTYGH+QGDWR + M N YGFDPHDDSD++TIHDN VYNN HGIIAS+RCN
Sbjct: 6 EIITDSKEKCNGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCN 140 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig87451.16279.1 >prot_H-elongata_contig87451.16279.1 ID=prot_H-elongata_contig87451.16279.1|Name=mRNA_H-elongata_contig87451.16279.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp MVVSQSTNQVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKback to top mRNA from alignment at H-elongata_contig87451:915..2346+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig87451.16279.1 ID=mRNA_H-elongata_contig87451.16279.1|Name=mRNA_H-elongata_contig87451.16279.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1432bp|location=Sequence derived from alignment at H-elongata_contig87451:915..2346+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig87451:915..2346+ >mRNA_H-elongata_contig87451.16279.1 ID=mRNA_H-elongata_contig87451.16279.1|Name=mRNA_H-elongata_contig87451.16279.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig87451:915..2346+ (Himanthalia elongata Himel1 dioecious)back to top |