prot_H-elongata_contig87402.16277.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig87402.16277.1
Unique Nameprot_H-elongata_contig87402.16277.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length182
Homology
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BLAST of mRNA_H-elongata_contig87402.16277.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.570e-52
Identity = 97/177 (54.80%), Postives = 121/177 (68.36%), Query Frame = 0 
Query:    4 RNMDLLGRKEGTGVNYTATVSDCGIFAVTKSRQQAHPMTTTRKTTKPMELVYTDLMGHITPAAKSGYKYTRKFTDDFSRMKGIFLLRSNMETAESLHQYNMTVVVSLELRIENIRCDKGGEYTGRGFKTLCINAGINVENTATNTLQQNGVSERDGQTLAQITRCLMKDGRFPAFLW 180
            R+M+LL +KE  GV+++ +++ C I A++KSRQ AHP  T R+TT PM+LVYTD MG  TP AK G+ Y  KFTD +S MK I+LL++  ET  +LH YNM V   L  RIE IRC+ GGE     F    +++ I +E  ATNT QQNGVSERDGQTL  ITR LMKDG FP  LW
Sbjct:  321 RSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEFTKYFMDSDITIEYAATNTPQQNGVSERDGQTLTTITRYLMKDGAFPPTLW 497
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BLAST of mRNA_H-elongata_contig87402.16277.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 5.280e-52
Identity = 95/179 (53.07%), Postives = 121/179 (67.60%), Query Frame = 0 
Query:    4 RNMDLLGRKEGTGVNYTATVSDCGIFAVTKSRQQAHPMTTTRKTTKPMELVYTDLMGHITPAAKSGYKYTRKFTDDFSRMKGIFLLRSNMETAESLHQYNMTVVVSLELRIENIRCDKGGEYTGRGFKTLCINAGINVENTATNTLQQNGVSERDGQTLAQITRCLMKDGRFPAFLWGN 182
            R+M LL +KE   V+++ +++ C I A++KS Q AHP  T+R+TT PM LVYTD+MG  TP AK G+ Y   F D +SR+K I+LL++  ET  +LH YNM V   L   IE IRCD+G E     F T C+++GI +E  ATNT QQNGVSERDGQTL  ITRCLMK+G FP  L G 
Sbjct:  119 RSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAYNMQVAAPLGRGIEIIRCDRGRENVANEFTTYCMDSGITIEYAATNTPQQNGVSERDGQTLTTITRCLMKNGAFPPTLCGE 297
[Close]
BLAST of mRNA_H-elongata_contig87402.16277.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 6.060e-52
Identity = 86/179 (48.04%), Postives = 119/179 (66.48%), Query Frame = 0 
Query:    1 MHPRNMDLLGRKEGTGVNYTATVSDCGIFAVTKSRQQAHPMTTTRKTTKPMELVYTDLMGHITPAAK---SGYKYTRKFTDDFSRMKGIFLLRSNMETAESLHQYNMTVVVSLELRIENIRCDKGGEYTGRGFKTLCINAGINVENTATNTLQQNGVSERDGQTLAQITRCLMKDGRFP 176
            ++ R++D+L +  GTGV+Y  ++S CG+  + K +Q  HP  +TR+ ++P +LV  D MG + P AK     + Y  K TDD+++MK ++LLR   +T E++H YNM V  +   RIE IRCDKGGE TG  F+  C N+ I +E  ATNT QQ GVSE DGQTLA +TRCL+KDG FP
Sbjct:   52 LNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSEGDGQTLAGVTRCLLKDGDFP 230
[Close]
BLAST of mRNA_H-elongata_contig87402.16277.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 6.720e-52
Identity = 89/185 (48.11%), Postives = 123/185 (66.49%), Query Frame = 0 
Query:    1 MHPRNMDLLGRKEGTGVNYTATVSDCGIFAVTKSRQQAHPMTTTRKTTKPMELVYTDLMGHITPAAK---SGYKYTRKFTDDFSRMKGIFLLRSNMETAESLHQYNMTVVVSLELRIENIRCDKGGEYTGRGFKTLCINAGINVENTATNTLQQNGVSERDGQTLAQITRCLMKDGRFPAFLWGN 182
            ++ R++D+L +  GTGV+Y  ++S CG+  + K +Q  HP  +TR+ ++P +LV  D MG + P AK     + Y  K TDD+++MK ++LLR   +T E++H YNM V  +   RIE IRCDKGGE TG  F+  C N+ I +E  ATNT QQ GVSERDGQTLA +TRCL+KDG FP  +WG 
Sbjct:   52 LNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGE 236
[Close]
BLAST of mRNA_H-elongata_contig87402.16277.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 5.080e-51
Identity = 89/185 (48.11%), Postives = 123/185 (66.49%), Query Frame = 0 
Query:    1 MHPRNMDLLGRKEGTGVNYTATVSDCGIFAVTKSRQQAHPMTTTRKTTKPMELVYTDLMGHITPAAK---SGYKYTRKFTDDFSRMKGIFLLRSNMETAESLHQYNMTVVVSLELRIENIRCDKGGEYTGRGFKTLCINAGINVENTATNTLQQNGVSERDGQTLAQITRCLMKDGRFPAFLWGN 182
            ++ R++D+L +  GTGV+Y  ++S CG+  + K +Q  HP  +TR+ ++P +LV  D MG + P AK     + Y  K TDD+++MK ++LLR   +T E++H YNM V  +   RIE IRCDKGGE TG  F+  C N+ I +E  ATNT QQ GVSERDGQTLA +TRCL+KDG FP  +WG 
Sbjct:   52 LNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGE 236
[Close]
BLAST of mRNA_H-elongata_contig87402.16277.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 8.060e-51
Identity = 88/185 (47.57%), Postives = 122/185 (65.95%), Query Frame = 0 
Query:    1 MHPRNMDLLGRKEGTGVNYTATVSDCGIFAVTKSRQQAHPMTTTRKTTKPMELVYTDLMGHITPAAK---SGYKYTRKFTDDFSRMKGIFLLRSNMETAESLHQYNMTVVVSLELRIENIRCDKGGEYTGRGFKTLCINAGINVENTATNTLQQNGVSERDGQTLAQITRCLMKDGRFPAFLWGN 182
            ++ R++D+L +  GTGV+Y  ++S CG+  + K +Q  HP  +TR+ ++P +LV  D MG + P AK     + Y  K TDD+++MK ++LLR   +T E++H YNM V  +   RIE IRCDKGGE TG  F+  C N+ I +E  ATNT QQ G SERDGQTLA +TRCL+KDG FP  +WG 
Sbjct:  428 LNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGE 612
[Close]
BLAST of mRNA_H-elongata_contig87402.16277.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.410e-50
Identity = 89/185 (48.11%), Postives = 123/185 (66.49%), Query Frame = 0 
Query:    1 MHPRNMDLLGRKEGTGVNYTATVSDCGIFAVTKSRQQAHPMTTTRKTTKPMELVYTDLMGHITPAAK---SGYKYTRKFTDDFSRMKGIFLLRSNMETAESLHQYNMTVVVSLELRIENIRCDKGGEYTGRGFKTLCINAGINVENTATNTLQQNGVSERDGQTLAQITRCLMKDGRFPAFLWGN 182
            ++ R++D+L +  GTGV+Y  ++S CG+  + K +Q  HP  +TR+ ++P +LV  D MG + P AK     + Y  K TDD+++MK ++LLR   +T E++H YNM V  +   RIE IRCDKGGE TG  F+  C N+ I +E  ATNT QQ GVSERDGQTLA +TRCL+KDG FP  +WG 
Sbjct:   52 LNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGE 236
[Close]
BLAST of mRNA_H-elongata_contig87402.16277.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.460e-50
Identity = 89/185 (48.11%), Postives = 123/185 (66.49%), Query Frame = 0 
Query:    1 MHPRNMDLLGRKEGTGVNYTATVSDCGIFAVTKSRQQAHPMTTTRKTTKPMELVYTDLMGHITPAAK---SGYKYTRKFTDDFSRMKGIFLLRSNMETAESLHQYNMTVVVSLELRIENIRCDKGGEYTGRGFKTLCINAGINVENTATNTLQQNGVSERDGQTLAQITRCLMKDGRFPAFLWGN 182
            ++ R++D+L +  GTGV+Y  ++S CG+  + K +Q  HP  +TR+ ++P +LV  D MG + P AK     + Y  K TDD+++MK ++LLR   +T E++H YNM V  +   RIE IRCDKGGE TG  F+  C N+ I +E  ATNT QQ GVSERDGQTLA +TRCL+KDG FP  +WG 
Sbjct:   52 LNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGE 236
[Close]
BLAST of mRNA_H-elongata_contig87402.16277.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 2.210e-50
Identity = 88/185 (47.57%), Postives = 122/185 (65.95%), Query Frame = 0 
Query:    1 MHPRNMDLLGRKEGTGVNYTATVSDCGIFAVTKSRQQAHPMTTTRKTTKPMELVYTDLMGHITPAAK---SGYKYTRKFTDDFSRMKGIFLLRSNMETAESLHQYNMTVVVSLELRIENIRCDKGGEYTGRGFKTLCINAGINVENTATNTLQQNGVSERDGQTLAQITRCLMKDGRFPAFLWGN 182
            ++ R++D+L +  GT V+Y  ++S CG+  + K +Q  HP  +TR+ ++P +LV  D MG + P AK     + Y  K TDD+++MK ++LLR   +T E++H YNM V  +   RIE IRCDKGGE TG  F+  C N+ I +E  ATNT QQ GVSERDGQTLA +TRCL+KDG FP  +WG 
Sbjct:  376 LNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGE 560
[Close]
BLAST of mRNA_H-elongata_contig87402.16277.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 7.100e-50
Identity = 88/185 (47.57%), Postives = 122/185 (65.95%), Query Frame = 0 
Query:    1 MHPRNMDLLGRKEGTGVNYTATVSDCGIFAVTKSRQQAHPMTTTRKTTKPMELVYTDLMGHITPAAK---SGYKYTRKFTDDFSRMKGIFLLRSNMETAESLHQYNMTVVVSLELRIENIRCDKGGEYTGRGFKTLCINAGINVENTATNTLQQNGVSERDGQTLAQITRCLMKDGRFPAFLWGN 182
            ++ R++D+L +  GTGV+Y  ++S CG+  + K +Q  HP  +TR+ ++P +LV  D MG + P AK     + Y  K TDD+++MK ++LLR   +T E++H YNM V  +   RIE IRCDKGGE TG  F+  C N+ I +E  ATNT QQ G SERDGQTLA +TRCL+KDG FP  +WG 
Sbjct:   52 LNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTLAGVTRCLLKDGDFPPSMWGE 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87402.16277.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYD3_9PHAE1.570e-5254.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT61_9PHAE5.280e-5253.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KZ34_9PHAE6.060e-5248.04Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KCM0_9PHAE6.720e-5248.11Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5K500_9PHAE5.080e-5148.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KT84_9PHAE8.060e-5147.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR8_9PHAE1.410e-5048.11Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE1.460e-5048.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVF6_9PHAE2.210e-5047.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE7.100e-5047.57Integrase catalytic domain-containing protein (Fra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 48..163
e-value: 2.1E-13
score: 50.5
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 46..182
score: 13.575
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 39..180
e-value: 8.8E-19
score: 69.5
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 22..182
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 22..182
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 46..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87402contigH-elongata_contig87402:1407..1952 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87402.16277.1mRNA_H-elongata_contig87402.16277.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig87402 1407..1976 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig87402.16277.1 ID=prot_H-elongata_contig87402.16277.1|Name=mRNA_H-elongata_contig87402.16277.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=182bp
MHPRNMDLLGRKEGTGVNYTATVSDCGIFAVTKSRQQAHPMTTTRKTTKP
MELVYTDLMGHITPAAKSGYKYTRKFTDDFSRMKGIFLLRSNMETAESLH
QYNMTVVVSLELRIENIRCDKGGEYTGRGFKTLCINAGINVENTATNTLQ
QNGVSERDGQTLAQITRCLMKDGRFPAFLWGN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf