mRNA_H-elongata_contig87221.16267.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87221.16267.1
Unique NamemRNA_H-elongata_contig87221.16267.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A6H5KHU6_9PHAE (Valine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 5.920e-35
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:    4 VRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMVS 180
            V LSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTT LETGMDILFFWVARMVS
Sbjct:    2 VCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMVS 60
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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: D8LT18_ECTSI (Valine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT18_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.010e-30
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:    1 QVRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 177
            QV LSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTT LETGMDILFFWVARMV
Sbjct:  573 QVCLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTLLETGMDILFFWVARMV 631
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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0C2H4_PARTE (Valine--tRNA ligase n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0C2H4_PARTE)

HSP 1 Score: 108 bits (271), Expect = 3.970e-26
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 QVRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 177
            Q++LSQDEDVLDTWFSSGLFPFS FGWPDV+  D KAFFP T LETG DILFFWVA+MV
Sbjct:  555 QIKLSQDEDVLDTWFSSGLFPFSTFGWPDVNHPDFKAFFPNTILETGWDILFFWVAKMV 613
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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A5J4YUZ1_PORPP (Valine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YUZ1_PORPP)

HSP 1 Score: 108 bits (270), Expect = 5.420e-26
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    7 RLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 177
             L QDEDVLDTWFSSGLFPFSVFGWPD+DSEDL+AF+PT  LETG DILFFWVARMV
Sbjct:  600 ELVQDEDVLDTWFSSGLFPFSVFGWPDMDSEDLQAFYPTNMLETGHDILFFWVARMV 656
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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A6V1PAS2_HETAK (Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PAS2_HETAK)

HSP 1 Score: 107 bits (268), Expect = 1.010e-25
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 QVRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 177
            QV L+QDEDVLDTWFSSGLFPFSVFGWP+  ++DLKAF+PTT LETGMDILFFWVARMV
Sbjct:  591 QVELAQDEDVLDTWFSSGLFPFSVFGWPN-PTDDLKAFYPTTLLETGMDILFFWVARMV 648
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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A7R9VUK8_9STRA (Valine--tRNA ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VUK8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.580e-25
Identity = 46/58 (79.31%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    4 VRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 177
            V L +DEDVLDTWFSSGLFPFSVFGWPD +++DL+AF+PT+ LETG+DILFFWVARMV
Sbjct:   18 VVLERDEDVLDTWFSSGLFPFSVFGWPD-ETDDLEAFYPTSLLETGLDILFFWVARMV 74
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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A482SF60_9ARCH (Valine--tRNA ligase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SF60_9ARCH)

HSP 1 Score: 103 bits (258), Expect = 1.690e-25
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    4 VRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 177
            + L QDEDVLDTWFSSGLFPFSVFGWP+ +++D KAFFPTT LETG+DILFFWVARMV
Sbjct:  122 ISLIQDEDVLDTWFSSGLFPFSVFGWPE-ETDDFKAFFPTTLLETGLDILFFWVARMV 178
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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A7S0BN81_9RHOD (Valine--tRNA ligase (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BN81_9RHOD)

HSP 1 Score: 101 bits (251), Expect = 1.700e-25
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 QVRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 177
            ++ L QDEDVLDTWFSSGLFPFSVFGWP+ +++DL+ FFPTT LETG DILFFWVARMV
Sbjct:   58 ELTLEQDEDVLDTWFSSGLFPFSVFGWPE-ETKDLQGFFPTTLLETGHDILFFWVARMV 115
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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A1B0G7V7_GLOMM (Valine--tRNA ligase n=6 Tax=Glossina TaxID=7393 RepID=A0A1B0G7V7_GLOMM)

HSP 1 Score: 107 bits (266), Expect = 1.880e-25
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 QVRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 177
            +V L QDEDVLDTWFSSGLFPFSVFGWPD +++DLK FFPTTFLETG DILFFWVARMV
Sbjct:  575 KVVLQQDEDVLDTWFSSGLFPFSVFGWPD-ETDDLKTFFPTTFLETGHDILFFWVARMV 632
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BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Match: A0A3P6REM3_DIBLA (Valine--tRNA ligase n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P6REM3_DIBLA)

HSP 1 Score: 99.4 bits (246), Expect = 2.180e-25
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 QVRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDILFFWVARMV 177
            ++ L QDEDVLDTWFSS LFP SVFGWP+ DS D +AF+P T LETG DILFFWVARMV
Sbjct:   14 EIHLIQDEDVLDTWFSSQLFPMSVFGWPNTDSSDFRAFYPGTLLETGHDILFFWVARMV 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87221.16267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHU6_9PHAE5.920e-3596.61Valine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LT18_ECTSI1.010e-3096.61Valine--tRNA ligase n=1 Tax=Ectocarpus siliculosus... [more]
A0C2H4_PARTE3.970e-2681.36Valine--tRNA ligase n=1 Tax=Paramecium tetraurelia... [more]
A0A5J4YUZ1_PORPP5.420e-2685.96Valine--tRNA ligase n=1 Tax=Porphyridium purpureum... [more]
A0A6V1PAS2_HETAK1.010e-2584.75Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo T... [more]
A0A7R9VUK8_9STRA1.580e-2579.31Valine--tRNA ligase (Fragment) n=1 Tax=Pseudictyot... [more]
A0A482SF60_9ARCH1.690e-2581.03Valine--tRNA ligase n=1 Tax=archaeon TaxID=1906665... [more]
A0A7S0BN81_9RHOD1.700e-2577.97Valine--tRNA ligase (Fragment) n=1 Tax=Rhodosorus ... [more]
A0A1B0G7V7_GLOMM1.880e-2584.75Valine--tRNA ligase n=6 Tax=Glossina TaxID=7393 Re... [more]
A0A3P6REM3_DIBLA2.180e-2574.58Valine--tRNA ligase n=1 Tax=Dibothriocephalus latu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87221contigH-elongata_contig87221:1368..1568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.2e-25
Seed eggNOG ortholog2880.D8LT18
KEGG rclassRC00055,RC00523
KEGG koko:K01873
KEGG ReactionR03665
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.valyl-tRNA aminoacylation
EggNOG OGsCOG0525@1,KOG0432@2759
EC6.1.1.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931273.0344355-CDS-H-elongata_contig87221:1367..15681622931273.0344355-CDS-H-elongata_contig87221:1367..1568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87221 1368..1568 -
1691679768.5890512-CDS-H-elongata_contig87221:1367..15681691679768.5890512-CDS-H-elongata_contig87221:1367..1568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87221 1368..1568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87221.16267.1prot_H-elongata_contig87221.16267.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87221 1368..1568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87221.16267.1

>prot_H-elongata_contig87221.16267.1 ID=prot_H-elongata_contig87221.16267.1|Name=mRNA_H-elongata_contig87221.16267.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
QVRLSQDEDVLDTWFSSGLFPFSVFGWPDVDSEDLKAFFPTTFLETGMDI
LFFWVARMVSHHSMPH*
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mRNA from alignment at H-elongata_contig87221:1368..1568-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87221.16267.1 ID=mRNA_H-elongata_contig87221.16267.1|Name=mRNA_H-elongata_contig87221.16267.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig87221:1368..1568- (Himanthalia elongata Himel1 dioecious)
CAGGTTCGCCTCAGCCAAGACGAAGACGTGCTCGACACATGGTTCAGCTC
CGGGCTGTTTCCGTTCTCGGTGTTCGGGTGGCCTGACGTGGACAGCGAGG
ACTTGAAGGCCTTCTTCCCGACGACCTTCTTGGAGACGGGGATGGACATC
CTCTTCTTTTGGGTGGCGAGGATGGTCAGTCATCACTCGATGCCTCACTA
G
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Coding sequence (CDS) from alignment at H-elongata_contig87221:1368..1568-

>mRNA_H-elongata_contig87221.16267.1 ID=mRNA_H-elongata_contig87221.16267.1|Name=mRNA_H-elongata_contig87221.16267.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig87221:1368..1568- (Himanthalia elongata Himel1 dioecious)
CAGGTTCGCCTCAGCCAAGACGAAGACGTGCTCGACACATGGTTCAGCTC
CGGGCTGTTTCCGTTCTCGGTGTTCGGGTGGCCTGACGTGGACAGCGAGG
ACTTGAAGGCCTTCTTCCCGACGACCTTCTTGGAGACGGGGATGGACATC
CTCTTCTTTTGGGTGGCGAGGATGGTCAGTCATCACTCGATGCCTCACTA
GCAGGTTCGCCTCAGCCAAGACGAAGACGTGCTCGACACATGGTTCAGCT
CCGGGCTGTTTCCGTTCTCGGTGTTCGGGTGGCCTGACGTGGACAGCGAG
GACTTGAAGGCCTTCTTCCCGACGACCTTCTTGGAGACGGGGATGGACAT
CCTCTTCTTTTGGGTGGCGAGGATGGTCAGTCATCACTCGATGCCTCACT
AG
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