prot_H-elongata_contig87106.16259.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig87106.16259.1
Unique Nameprot_H-elongata_contig87106.16259.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length64
Homology
BLAST of mRNA_H-elongata_contig87106.16259.1 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.220e-30
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0
Query:    6 SYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 62
            SYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPP+RT
Sbjct:   36 SYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRT 92          
BLAST of mRNA_H-elongata_contig87106.16259.1 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.500e-26
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 0
Query:    6 SYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 62
            +YDQHLNMVLGDVEETVTT E+DEDT EEI+RTSKR IEMLFVRGDVVILVSPPLRT
Sbjct:   52 AYDQHLNMVLGDVEETVTTQEIDEDTSEEIIRTSKRMIEMLFVRGDVVILVSPPLRT 108          
BLAST of mRNA_H-elongata_contig87106.16259.1 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.480e-26
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 0
Query:    6 SYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 62
            +YDQHLNMVLGDVEETVTT E+DEDT EEI+RTSKR IEMLFVRGDVVILVSPPLRT
Sbjct:   45 AYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDVVILVSPPLRT 101          
BLAST of mRNA_H-elongata_contig87106.16259.1 vs. uniprot
Match: A0A0M0JVC1_9EUKA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVC1_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 2.810e-26
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0
Query:    6 SYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 62
            +YDQHLNMVLGDVEE VTTVEVDE+TYEEI++TSKR IEMLFVRGD VIL+SPPLRT
Sbjct:   37 AYDQHLNMVLGDVEEVVTTVEVDEETYEEIIKTSKRQIEMLFVRGDGVILISPPLRT 93          
BLAST of mRNA_H-elongata_contig87106.16259.1 vs. uniprot
Match: K3ZB54_SETIT (U6 snRNA-associated Sm-like protein LSm3 n=9 Tax=Poaceae TaxID=4479 RepID=K3ZB54_SETIT)

HSP 1 Score: 99.4 bits (246), Expect = 8.760e-26
Identity = 48/58 (82.76%), Postives = 55/58 (94.83%), Query Frame = 0
Query:    6 SYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRTI 63
            +YDQHLNM+LGDVEETVTTVE+D++TYEEIVRTSKR+I  LFVRGD VILVSPPLRT+
Sbjct:   40 AYDQHLNMILGDVEETVTTVEIDDETYEEIVRTSKRTIPFLFVRGDGVILVSPPLRTV 97          
BLAST of mRNA_H-elongata_contig87106.16259.1 vs. uniprot
Match: R1DJQ4_EMIHU (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Eukaryota TaxID=2759 RepID=R1DJQ4_EMIHU)

HSP 1 Score: 98.6 bits (244), Expect = 1.580e-25
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = 0
Query:    1 RDVR---QSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 62
            RD+R    ++DQHLNMVLG+VEETVTT+EVDE+TYEEI++TSKR I+MLFVRGD V+LVSPPLRT
Sbjct:   28 RDLRGRLHAFDQHLNMVLGEVEETVTTIEVDEETYEEIIKTSKRQIDMLFVRGDGVVLVSPPLRT 92          
BLAST of mRNA_H-elongata_contig87106.16259.1 vs. uniprot
Match: A0A2G5DC99_AQUCA (U6 snRNA-associated Sm-like protein LSm3 n=3 Tax=Ranunculaceae TaxID=3440 RepID=A0A2G5DC99_AQUCA)

HSP 1 Score: 97.8 bits (242), Expect = 3.560e-25
Identity = 45/57 (78.95%), Postives = 55/57 (96.49%), Query Frame = 0
Query:    6 SYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 62
            +YDQHLNM+LGDVEET+TTVE+D++TYEEIVRT+KR+++ LFVRGD VILVSPPLRT
Sbjct:   40 AYDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRNVQFLFVRGDGVILVSPPLRT 96          
BLAST of mRNA_H-elongata_contig87106.16259.1 vs. uniprot
Match: LSM3B_ARATH (Sm-like protein LSM3B n=7 Tax=Brassicaceae TaxID=3700 RepID=LSM3B_ARATH)

HSP 1 Score: 97.8 bits (242), Expect = 3.670e-25
Identity = 46/57 (80.70%), Postives = 55/57 (96.49%), Query Frame = 0
Query:    6 SYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 62
            ++DQHLNM+LGDVEET+TTVE+D++TYEEIVRT+KR+IE LFVRGD VILVSPPLRT
Sbjct:   40 AFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96          
BLAST of mRNA_H-elongata_contig87106.16259.1 vs. uniprot
Match: A0A6L5CMI0_9INSE (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5CMI0_9INSE)

HSP 1 Score: 97.1 bits (240), Expect = 7.820e-25
Identity = 47/56 (83.93%), Postives = 53/56 (94.64%), Query Frame = 0
Query:    6 SYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLR 61
            +YDQHLNMVLGDVEETVTTVE+DE+TYEE+ RT+KRSI MLFVRGD VILVSPP+R
Sbjct:   44 AYDQHLNMVLGDVEETVTTVEIDEETYEEVYRTTKRSIPMLFVRGDGVILVSPPMR 99          
BLAST of mRNA_H-elongata_contig87106.16259.1 vs. uniprot
Match: A0A8J5XN36_DIALT (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XN36_DIALT)

HSP 1 Score: 96.7 bits (239), Expect = 9.920e-25
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 0
Query:    6 SYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPLRT 62
            +YDQHLNMVLGDV+ETVTT ++D +TYEEI++TSKRSIEMLFVRGD VILVSPPLRT
Sbjct:   39 AYDQHLNMVLGDVDETVTTRDIDTETYEEIIKTSKRSIEMLFVRGDGVILVSPPLRT 95          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87106.16259.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXS6_ECTSI4.220e-3098.25U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]
A0A7S2FJT0_9STRA1.500e-2689.47U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=F... [more]
A0A7S2GP21_9STRA2.480e-2689.47U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D... [more]
A0A0M0JVC1_9EUKA2.810e-2685.96U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=C... [more]
K3ZB54_SETIT8.760e-2682.76U6 snRNA-associated Sm-like protein LSm3 n=9 Tax=P... [more]
R1DJQ4_EMIHU1.580e-2575.38U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]
A0A2G5DC99_AQUCA3.560e-2578.95U6 snRNA-associated Sm-like protein LSm3 n=3 Tax=R... [more]
LSM3B_ARATH3.670e-2580.70Sm-like protein LSM3B n=7 Tax=Brassicaceae TaxID=3... [more]
A0A6L5CMI0_9INSE7.820e-2583.93U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=E... [more]
A0A8J5XN36_DIALT9.920e-2582.46U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..58
e-value: 3.5E-11
score: 42.6
NoneNo IPR availableGENE3D2.30.30.100coord: 3..60
e-value: 5.7E-17
score: 63.3
NoneNo IPR availablePANTHERPTHR13110:SF11coord: 5..63
IPR040002U6 snRNA-associated Sm-like protein Lsm3PANTHERPTHR13110U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3coord: 5..63
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 6..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87106contigH-elongata_contig87106:1570..2581 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87106.16259.1mRNA_H-elongata_contig87106.16259.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig87106 1570..2581 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig87106.16259.1 ID=prot_H-elongata_contig87106.16259.1|Name=mRNA_H-elongata_contig87106.16259.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
RDVRQSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRG
DVVILVSPPLRTI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR040002Sm-like_LSM3
IPR010920LSM_dom_sf