mRNA_H-elongata_contig8707.16258.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8707.16258.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI) HSP 1 Score: 423 bits (1088), Expect = 8.970e-139 Identity = 235/542 (43.36%), Postives = 299/542 (55.17%), Query Frame = 1
Query: 1 CHACGA--SKKYRPTVSCNLCRKLYHPKCAGFEPQSRRYPPPDWVCPECPGGQRGPNDVEIHASLKGKGTATV--GSQPWCPVCFEDNRVPGRKK--SLDGGQKVPLAVASSGGKGGSTSAAAGRLPAAIPGGRKSFEAISSRG----------------------GGARGLLRTSGRVDVGAATSSSSATVKRRFSEEVTSPEIARNPPTPLGEPSLRGKTGLVEAVRSSRR--------PKSSPGGSFVRASNVICKTCKRR---GRLKSGKTCASCKQWWHANADCSAAARGNHPDASEVGKWVGGWRCQGCLDEWEDGLRTRTAAVVKAWAELEERRERRAKEFKIAKEAVMAESVGASRHGFAVDAVKVPPIPHPPAGILPFLDLECIQDTGFRLARITKDDCAFMGPDCVLAKVDLCWKHRIFTIIEGVFGPQVQPLMDFLEERKGLSCRISGKAATGESSSTMGDYRARLTDR-RDKPR----KDSPGTFFLDTPSGQTEVLNWLPTDPLMSEFIPGARRGGLQDHIRGDRCKFG 1494
C ACG ++ P+ +C CRKLYH C G+ ++R+ PPPDW+CP CPGG+RGP+ ++H S+ GKGT G+ PWCP+C D+R+P K L+ G ++ E +S+ G RT G + TS S +P NPP R + R R +C CK++ SGKTC +C +WWH + C A E G+WVGGWRC+ CL WE GLR R A VV+AW + E RRER A + A AES A RHGF+V AV++PP+ PPAGILPFLD++ I+DTGFRLAR +++DC+FMGPDCV+AKVDLCWKHRIF I+EG F PQ+QPLMDFL+ERK L+C++SGKAA+GE+SSTMGDYR++L DR RD KD+PGTFFLDT +GQ +VLNWLPTDPLM IP A RGGL +HI G+RCKFG
Sbjct: 122 CEACGKVFTRDVHPSFACRACRKLYHRSCVGYANRARQSPPPDWICPHCPGGERGPSP-QVHLSVAGKGTVKQRKGNMPWCPICLRDDRLPNSKLVGRLNSGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRLEVVSATGQDXXXXXXXXXXXXXXXXRRKASSCGAADRTMGETALSGVTSGSL--------NRGAAPREEENPPARQ----QRARQXXASTARGGGRNGXXXXXXXXXXXXXXXXXXXGTVCFKCKKKRSGSNKSSGKTCGTCGRWWHNSVHCCGAY-----GCPESGEWVGGWRCRHCLSLWEKGLRDRAAKVVEAWNDQEARRERDAPLHRETAAAAAAESKAARRHGFSVAAVEIPPVCCPPAGILPFLDVDAIKDTGFRLARFSREDCSFMGPDCVVAKVDLCWKHRIFAIVEGAFDPQIQPLMDFLQERKSLACKLSGKAASGEASSTMGDYRSKLADRIRDGKESAKAKDNPGTFFLDTTTGQADVLNWLPTDPLMKGLIPEAERGGLAEHIHGERCKFG 645 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8707.16258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8707.16258.1 >prot_H-elongata_contig8707.16258.1 ID=prot_H-elongata_contig8707.16258.1|Name=mRNA_H-elongata_contig8707.16258.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=498bp CHACGASKKYRPTVSCNLCRKLYHPKCAGFEPQSRRYPPPDWVCPECPGGback to top mRNA from alignment at H-elongata_contig8707:5648..9608+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8707.16258.1 ID=mRNA_H-elongata_contig8707.16258.1|Name=mRNA_H-elongata_contig8707.16258.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3961bp|location=Sequence derived from alignment at H-elongata_contig8707:5648..9608+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8707:5648..9608+ >mRNA_H-elongata_contig8707.16258.1 ID=mRNA_H-elongata_contig8707.16258.1|Name=mRNA_H-elongata_contig8707.16258.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2988bp|location=Sequence derived from alignment at H-elongata_contig8707:5648..9608+ (Himanthalia elongata Himel1 dioecious)back to top |