mRNA_H-elongata_contig8707.16257.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8707.16257.1
Unique NamemRNA_H-elongata_contig8707.16257.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8707.16257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8707contigH-elongata_contig8707:2412..4802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_000430.1
Exons2
Model size429
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8707.16257.1prot_H-elongata_contig8707.16257.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8707 2412..4776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931271.7647448-CDS-H-elongata_contig8707:2411..26941622931271.7647448-CDS-H-elongata_contig8707:2411..2694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8707 2412..2694 -
1691679768.0713816-CDS-H-elongata_contig8707:2411..26941691679768.0713816-CDS-H-elongata_contig8707:2411..2694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8707 2412..2694 -
1622931271.783315-CDS-H-elongata_contig8707:4657..47761622931271.783315-CDS-H-elongata_contig8707:4657..4776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8707 4658..4776 -
1691679768.0800126-CDS-H-elongata_contig8707:4657..47761691679768.0800126-CDS-H-elongata_contig8707:4657..4776Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8707 4658..4776 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931271.8033524-UTR-H-elongata_contig8707:4776..48021622931271.8033524-UTR-H-elongata_contig8707:4776..4802Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8707 4777..4802 -
1691679768.0903232-UTR-H-elongata_contig8707:4776..48021691679768.0903232-UTR-H-elongata_contig8707:4776..4802Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8707 4777..4802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8707.16257.1

>prot_H-elongata_contig8707.16257.1 ID=prot_H-elongata_contig8707.16257.1|Name=mRNA_H-elongata_contig8707.16257.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MASDGGGGKGGVDKTPDVKAWRRLHASREREREWIYEVLRDFERRTPTRP
SLSLDSGTPGNTACAQKQNVTTVGGLYPVGTGRIAASSVATAAAAAAANA
VVARAAVEAAATSTAAAAVSLTDRPRASTSPQIR
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mRNA from alignment at H-elongata_contig8707:2412..4802-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8707.16257.1 ID=mRNA_H-elongata_contig8707.16257.1|Name=mRNA_H-elongata_contig8707.16257.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2391bp|location=Sequence derived from alignment at H-elongata_contig8707:2412..4802- (Himanthalia elongata Himel1 dioecious)
GGTTGAGCCTCCTCTCATGTACGTCAATGGCGAGCGATGGCGGAGGTGGG
AAGGGTGGTGTGGACAAAACCCCAGACGTTAAGGCTTGGCGACGGCTGCA
TGCTAGCCGGGAACGGGAGAGGGAGTGGATCTACGAGGTTCTTCGGTGAG
CGTTTGAAATATTAAAGAAAGTCTGCCGTTTGAAATGGACACCCTCCCCA
GACGCGCGGTGTTTTGAAACAAACATAAAACAAACATCTACAGTACAGTA
TCAGATCTACTAACACTGGACGTAATTTTACCCCCATAGCCAGCCGATAG
CCCTACCTCCTCATTCCGAGAGGAAAAAACGGCATTTTATCTACCACCCA
ATCGCGCTCAGCCCGCCGAGGACTGCACTACTCGTACCAATTGCACAGGA
AAGAAGATAGGGTCGGGTGGTTGGGGGCTTGTGCCCCCTGTGTGTTGTGA
TCGCAGACTTGCGCCAGCGCAAGTTTATATTGGAACAGGGGAATCATATT
TCGTAACACAATAAAGCAATACCTACTATTTATACCTAATAAATATTATA
TGAATATTATAGCTTTTGTTTGGGTTGTGCCCAGTAGGCATAGATCAGTC
GTATGAGATTAGATGTTGTACTCTCTCTCTGTAGAGAGCTATACCGGTTG
TATTCGACGCAGTTGTTATTATCATTTTCAAAGATTAAAATACGCTTAGA
GGTTCCAGGTAACCTGTGTGTGTATTTTAGTCGCTTAGATGTTGACCTTA
GGAGACACATCCAACGATACGATTGATTCTCCTCATATCATCTTCATACT
CTACCTGCACCGATATTTGGTATGACCAAAGCTAATCCTAATACTAATGC
TAATGCGAAAAGCACACACAAGCATTGCAATTTAATATGTACACAAAAGC
GTACCACAAGCGAGATTGGGAATACTGTATAGAGGCAATGTCGCCATAAT
ATCGCCTCTTTAAAGTCACCCCGGTGGTGCAGCTGGTAACCTCGAAATCT
TCCTGACGTTGGGACGTGAGTTCGAATATCCCAAAACGCAGTCACACGAA
CTGTTATTTATTTATTTATTTTCTCAACATTATGCCTAACAAGTGGAGAA
CAAATATTTCGTGGGTACACAAAAATTCAAAATTCGACCCGGGGGAAAGG
GACGACTGAATCCTTCTCGCGATAACAAAATTAAGGCAAAATCATGTGTG
ACCCCCCGGCTGGTGCGTCCACAAGACTTACCTCTAGAATAAATGCGATA
ACAACAACAATACATGAGGTTCGAATGAGTTTCTATATTTTTGAAGAATA
ATTTTACAGAGGCTATAAGGGCAGCAGCATTTTACATTTTACAGTACTGT
ACCGCAGTCCGGCCCCGCCATGTTGCTCATTCTGGGCCACTCGCAATGGC
ACTCCCAATGGAGGAGTGTGGGTCTCAACCATACTATATCCAATACATCC
AATACTCTACTGTATGTTCTGTATAATAGCTTGTCCTCTCAAAGAGGTGT
TTTAGTGATTTAGTATATTTTACTTTAGTATTGCTAACTATAGCTACCGT
ACAGTCAGTCCGTCGAACCGTTGTTATCTTTGTCATCATGCCGTGTCGAA
TCGTCATCATGCCCTGTCGAATCCACAACGTAATGGGTAATAAATAGACC
ATGCGAAGGTGGGCTGATAGCTCTCGGGATCGATGTAAAGCTGCTGAATT
GGACATAGTATAGGCTCTAGATTAGTTAGCTTTGGGTTGGCAACCAACAC
GCTTGACCCAAAAAAAGTGCTACCGGGACAACCGACAGAGTTACGCTCGT
GACCAGCGCTCGAGAGCTCTCTGGTCACCCATTTAACGGCTCTAGAATAC
TTGAAAGCAGCATCTCATAGCTCAAGTACGACCTGGTTCTACGGTTAGTA
GTATCGTCATTGAATCAAAGCCCTGCCATCATTGAGGGCCATGCCGTGTT
GTAGAAAAGCCGCAATAATAAGTAGTGATTGGTCCGTGTCAGTGCCCCCC
TGGGCCAGCCTGCAGCCCCCGCATCAGCTCTCGCTCAACACAACGAACGC
ACCGTCTCACCCCCCCCCCCCCGCCTCCCCCCCACGCGCGTGCTTCAAAC
TCCTGCAGTGATTTTGAACGCAGAACACCGACGCGCCCGAGCCTATCTCT
TGACAGCGGTACCCCCGGGAATACAGCATGCGCGCAAAAACAGAACGTCA
CAACCGTCGGGGGCTTATATCCCGTGGGTACTGGGCGTATTGCGGCATCA
TCAGTAGCCACGGCAGCAGCGGCGGCGGCGGCGAATGCGGTGGTAGCAAG
AGCGGCGGTGGAAGCGGCAGCAACATCAACTGCCGCCGCCGCCGTGTCTC
TAACGGATCGACCGCGAGCAAGCACATCTCCGCAGATACGA
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Coding sequence (CDS) from alignment at H-elongata_contig8707:2412..4802-

>mRNA_H-elongata_contig8707.16257.1 ID=mRNA_H-elongata_contig8707.16257.1|Name=mRNA_H-elongata_contig8707.16257.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig8707:2412..4802- (Himanthalia elongata Himel1 dioecious)
ATGGCGAGCGATGGCGGAGGTGGGAAGGGTGGTGTGGACAAAACCCCAGA
CGTTAAGGCTTGGCGACGGCTGCATGCTAGCCGGGAACGGGAGAGGGAGT
GGATCTACGAGGTTCTTCGATGGCGAGCGATGGCGGAGGTGGGAAGGGTG
GTGTGGACAAAACCCCAGACGTTAAGGCTTGGCGACGGCTGCATGCTAGC
CGGGAACGGGAGAGGGAGTGGATCTACGAGGTTCTTCGTGATTTTGAACG
CAGAACACCGACGCGCCCGAGCCTATCTCTTGACAGCGGTACCCCCGGGA
ATACAGCATGCGCGCAAAAACAGAACGTCACAACCGTCGGGGGCTTATAT
CCCGTGGGTACTGGGCGTATTGCGGCATCATCAGTAGCCACGGCAGCAGC
GGCGGCGGCGGCGAATGCGGTGGTAGCAAGAGCGGCGGTGGAAGCGGCAG
CAACATCAACTGCCGCCGCCGCCGTGTCTCTAACGGATCGACCGCGAGCA
AGCACATCTCCGCAGATACGATGATTTTGAACGCAGAACACCGACGCGCC
CGAGCCTATCTCTTGACAGCGGTACCCCCGGGAATACAGCATGCGCGCAA
AAACAGAACGTCACAACCGTCGGGGGCTTATATCCCGTGGGTACTGGGCG
TATTGCGGCATCATCAGTAGCCACGGCAGCAGCGGCGGCGGCGGCGAATG
CGGTGGTAGCAAGAGCGGCGGTGGAAGCGGCAGCAACATCAACTGCCGCC
GCCGCCGTGTCTCTAACGGATCGACCGCGAGCAAGCACATCTCCGCAGAT
ACGA
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