mRNA_H-elongata_contig87069.16256.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87069.16256.1
Unique NamemRNA_H-elongata_contig87069.16256.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig87069.16256.1 vs. uniprot
Match: A0A6H5LEA1_9PHAE (Vesicle-fusing ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LEA1_9PHAE)

HSP 1 Score: 566 bits (1458), Expect = 1.010e-194
Identity = 303/417 (72.66%), Postives = 335/417 (80.34%), Query Frame = 1 
Query:    1 LRQAVRRTVERARQRSRHSDDSAMTWSWLTLSPRPVRVTLASG-DPRFGVYLTVLPAGKGSPPSHRPMYGCHMLSRVLAGEIEQVKSNSQRVIGRSTHSLETPVWSSYGGGARRLVNEGFLPAVILEVILYDWSRGSGYSGSYAAPGTSNSGSAERRAEADEIGAA--AIVKGTEIGAVST--RGVVSIVAMDACPCPPAALFRDGDVYDEEEDMDGRDGVRLALVRRDGKPMTAPAAGGQGGGASSDGLAGGSGFSELFTADELACDVGGLDSQLDDIVRRVLSTRSLPAELRQAL--------GVSHVRGLLLYGPPGCGKTLLARELSRRLGARPPKLVSGPEILDKWVGEAERKVRLLFLDAELEHQRCVQIGEDPAGLPLNLVCFDEIDALCRRRGSLSGDTSGVRDSVVNQ 1212
            L + VR  + RARQRSRHSD SA+ WSWLTLSPRPVRV +A+  D R GVYLTVLPAG G+PPSHRPMYGCH+LSRVLAGE+EQVKSNS+RVIGRSTHSLETPVWSS+GGGARRL+NE F PAVILEV++YDWSRGSGYSGSYAAPGTS+SGSAE RAEA+ +G A  A V+G   G  S    G++ IVAMD+CPCPPA LFRDGDVY EE          L LVR DG  +    A G+        + GG G  +L TAD LACDVGGLD QL+DIVRRVLSTRS+P E+            GV HVRGLLL+GPPGCGKTLLARELSRRLGARPPKLVSGPEILDKWVGEAERKVRLLFLDAEL+H+RCVQ+GEDPAGLPLNL+CFDEIDALCR RGSLSGDTSGVRDSVVNQ
Sbjct:  167 LLEGVRAVLSRARQRSRHSDGSALAWSWLTLSPRPVRVAVATPEDGRVGVYLTVLPAGNGNPPSHRPMYGCHILSRVLAGEVEQVKSNSKRVIGRSTHSLETPVWSSFGGGARRLINESFQPAVILEVVMYDWSRGSGYSGSYAAPGTSSSGSAELRAEAEGVGRAEAAGVEGDGGGESSPAENGILPIVAMDSCPCPPALLFRDGDVY-EEXXXXXXXXXXLTLVRSDGGVVEQGRAAGE--------VVGG-GVEDLLTADGLACDVGGLDGQLEDIVRRVLSTRSIPTEVGHGTARYGAVRCGVGHVRGLLLHGPPGCGKTLLARELSRRLGARPPKLVSGPEILDKWVGEAERKVRLLFLDAELDHERCVQMGEDPAGLPLNLICFDEIDALCRSRGSLSGDTSGVRDSVVNQ 573
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BLAST of mRNA_H-elongata_contig87069.16256.1 vs. uniprot
Match: A0A836CBN6_9STRA (Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN6_9STRA)

HSP 1 Score: 355 bits (912), Expect = 2.200e-112
Identity = 207/388 (53.35%), Postives = 246/388 (63.40%), Query Frame = 1 
Query:   64 SAMTWSWLTLSPRPVRVTLASGDPRFGVYLTVLPAGKGSPPSHRPMYGCHMLSRVLAGEIEQVKSNSQRVIGRSTHSLETPVWSSYGGGARRLVNEGFLPAVILEVILYDWSRGSGYSGSYAAPGTSNSGSAERRAEADEIGAAAIVKGTEIGAVSTRGVVSIVAMDACPCPPAALFRD-----GDVYDEEEDMDGRDGVRLALVRRDGKPMTAPAAGGQGGGASSDGLAGGSGFSELFTADELACDVGGLDSQLDDIVRRVLSTRSLPAELRQALGVSHVRGLLLYGPPGCGKTLLARELSRRLGARPPKLVSGPEILDKWVGEAERKVRLLFLDAELEHQRCVQIGEDPAGLPLNLVCFDEIDALCRRRGSLSGDTSGVRDSVVNQ 1212
            +++ WSWL LS  P+RV L  G   FGV LTVLP G   PP+HRPM G HMLS V  G++EQVK+N QR+I R+ H+ ETP+W+S+GGG RRL N     A ILEV+ Y   RG     + A  G    G+AER AEADE     I+ G            ++  + A PC P  LFR      GD   E   + GR+G  L                                         LA  VGGLD+QL++IVRRVL+TR+LPA++RQALGVSHVRGLLLYGPPGCGKTLLAREL+RRL ARPP+LVSGPE+LDKWVGEAERKVR LF  AE EH+RCV+ G DPA LPL+++CFDE+DALCR RGSL GDTSGVRDSVVNQ
Sbjct:  158 ASLAWSWLGLSTMPLRVMLHQGG-GFGVLLTVLPPG-AKPPAHRPMIGAHMLSIVCQGDVEQVKANGQRIINRTRHTPETPIWNSFGGGVRRLANMSVTTAYILEVLFYG-KRGPPEYDTRAPDG----GAAERNAEADEF----ILSGPR----------AMATLSAPPCDPEVLFRSVGEEGGDEGGEVLVIRGREGSLLLGXXXXXXXXXXXX------------------XXXXVVGASLATSVGGLDTQLEEIVRRVLATRALPADVRQALGVSHVRGLLLYGPPGCGKTLLARELARRLKARPPQLVSGPEVLDKWVGEAERKVRALFAAAEEEHERCVRGGGDPADLPLHVICFDELDALCRTRGSLLGDTSGVRDSVVNQ 506
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BLAST of mRNA_H-elongata_contig87069.16256.1 vs. uniprot
Match: A0A1E7FWZ3_9STRA (Vesicle-fusing ATPase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWZ3_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.190e-49
Identity = 91/141 (64.54%), Postives = 117/141 (82.98%), Query Frame = 1 
Query:  790 VGGLDSQLDDIVRRVLSTRSLPAELRQALGVSHVRGLLLYGPPGCGKTLLARELSRRLGARPPKLVSGPEILDKWVGEAERKVRLLFLDAELEHQRCVQIGEDPAGLPLNLVCFDEIDALCRRRGSLSGDTSGVRDSVVNQ 1212
            VGGLD QL+DIVRRVL++R+   +L + LGV+HVRG+LL GPPGCGKTLLARELS  LGAR P++V+GPEILDK++GEAE+ VR LF  AELE++   Q+G+D A   L+++  DE+DA+ RRRGS+SGD++GVRDSVVNQ
Sbjct:    8 VGGLDGQLNDIVRRVLASRA-NRDLSRRLGVNHVRGILLSGPPGCGKTLLARELSEMLGAREPQIVNGPEILDKFIGEAEKNVRQLFEPAELEYE---QVGDDSA---LHVIILDELDAIARRRGSVSGDSTGVRDSVVNQ 141
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BLAST of mRNA_H-elongata_contig87069.16256.1 vs. uniprot
Match: A0A7S1ZM88_TRICV (Vesicle-fusing ATPase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZM88_TRICV)

HSP 1 Score: 175 bits (444), Expect = 5.010e-49
Identity = 93/141 (65.96%), Postives = 115/141 (81.56%), Query Frame = 1 
Query:  790 VGGLDSQLDDIVRRVLSTRSLPAELRQALGVSHVRGLLLYGPPGCGKTLLARELSRRLGARPPKLVSGPEILDKWVGEAERKVRLLFLDAELEHQRCVQIGEDPAGLPLNLVCFDEIDALCRRRGSLSGDTSGVRDSVVNQ 1212
            VGGLDSQLD I RRVL++R+ PA  R+ LGVSHVRG+LL GPPGCGKTLLARELSR LGAR P++V+GPEILDK++GEAE+KVR LF  AE E+     +G+D A   L+++  DE+DA+ RRRGS++ DT+GVRDSVVNQ
Sbjct:    8 VGGLDSQLDSIARRVLASRANPAAARR-LGVSHVRGVLLSGPPGCGKTLLARELSRVLGAREPQIVNGPEILDKFIGEAEKKVRDLFAPAEEEY---ALMGDDSA---LHIIILDEMDAIARRRGSMTSDTTGVRDSVVNQ 141
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BLAST of mRNA_H-elongata_contig87069.16256.1 vs. uniprot
Match: A0A8J9TMG8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TMG8_PHATR)

HSP 1 Score: 168 bits (425), Expect = 2.090e-46
Identity = 88/141 (62.41%), Postives = 114/141 (80.85%), Query Frame = 1 
Query:  790 VGGLDSQLDDIVRRVLSTRSLPAELRQALGVSHVRGLLLYGPPGCGKTLLARELSRRLGARPPKLVSGPEILDKWVGEAERKVRLLFLDAELEHQRCVQIGEDPAGLPLNLVCFDEIDALCRRRGSLSGDTSGVRDSVVNQ 1212
            VGGLD QL+ I RRVL++R+ PA  R+ LGVSHVRG+LL GPPGCGKTLLAREL+R LGAR P++V+GPEILDK++GEAER+VR LF  AE E++     G+D A   L+++  DE+DA+ R+RG+++ DT+GVRDSVVNQ
Sbjct:    6 VGGLDVQLEAIARRVLASRANPAAARR-LGVSHVRGILLSGPPGCGKTLLARELARILGAREPQIVNGPEILDKYIGEAERRVRDLFAPAEQEYKVA---GDDSA---LHIIILDEMDAIARKRGTMTSDTTGVRDSVVNQ 139
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BLAST of mRNA_H-elongata_contig87069.16256.1 vs. uniprot
Match: A0A7S2M5J1_9STRA (Vesicle-fusing ATPase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M5J1_9STRA)

HSP 1 Score: 179 bits (455), Expect = 5.240e-46
Identity = 92/141 (65.25%), Postives = 117/141 (82.98%), Query Frame = 1 
Query:  790 VGGLDSQLDDIVRRVLSTRSLPAELRQALGVSHVRGLLLYGPPGCGKTLLARELSRRLGARPPKLVSGPEILDKWVGEAERKVRLLFLDAELEHQRCVQIGEDPAGLPLNLVCFDEIDALCRRRGSLSGDTSGVRDSVVNQ 1212
            VGGLD QLDDI RRVL++R+ PA  R+ LGVSHVRG+LL GPPGCGKTLLARELSR LGAR P++V+GPEILDK++GEAER+VR LF+ AE E++   ++G+  A   L+++  DE+DA+ R+RGS+S DT+GVRDSVVNQ
Sbjct:  368 VGGLDKQLDDIARRVLASRANPAAARK-LGVSHVRGILLSGPPGCGKTLLARELSRLLGAREPQIVNGPEILDKFIGEAERRVRELFIPAEREYE---EVGDSSA---LHIIILDEMDAIARKRGSMSSDTTGVRDSVVNQ 501
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BLAST of mRNA_H-elongata_contig87069.16256.1 vs. uniprot
Match: A0A8J2SL94_9STRA (Vesicle-fusing ATPase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL94_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.220e-45
Identity = 97/151 (64.24%), Postives = 118/151 (78.15%), Query Frame = 1 
Query:  760 LFTADELACDVGGLDSQLDDIVRRVLSTRSLPAELRQALGVSHVRGLLLYGPPGCGKTLLARELSRRLGARPPKLVSGPEILDKWVGEAERKVRLLFLDAELEHQRCVQIGEDPAGLPLNLVCFDEIDALCRRRGSLSGDTSGVRDSVVNQ 1212
            L T + L   VGGL+ QLD IVRRVL++R+ P E  + LGV HVRG+LL GPPGCGKTLLAREL+R LGAR P++V+GPEILDK+VGEAERKVR LF  AE E +   Q+G+  A   L++V FDE+DA+ RRRGSL+GDT+GVRD VVNQ
Sbjct:  313 LLTQEALRERVGGLEQQLDAIVRRVLASRASP-EAAKRLGVGHVRGVLLSGPPGCGKTLLARELARALGAREPQIVNGPEILDKFVGEAERKVRELFAPAEAEFR---QVGDASA---LHVVVFDEMDAIARRRGSLTGDTTGVRDGVVNQ 456
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BLAST of mRNA_H-elongata_contig87069.16256.1 vs. uniprot
Match: A0A7S3QJ62_9STRA (Vesicle-fusing ATPase (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJ62_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.080e-44
Identity = 89/141 (63.12%), Postives = 117/141 (82.98%), Query Frame = 1 
Query:  790 VGGLDSQLDDIVRRVLSTRSLPAELRQALGVSHVRGLLLYGPPGCGKTLLARELSRRLGARPPKLVSGPEILDKWVGEAERKVRLLFLDAELEHQRCVQIGEDPAGLPLNLVCFDEIDALCRRRGSLSGDTSGVRDSVVNQ 1212
            VGGLDSQLD IVRRVL++R+ P   R+ LG+SHVRG+LL GPPGCGKTLLAREL+R LGAR P++V+GPEILDK++GEAE++VR LF+ AE+E+    Q+G++ A   L+++  DE+DA+ R+RGS +GD +GVRDSVVNQ
Sbjct:  342 VGGLDSQLDTIVRRVLASRANPEAARR-LGISHVRGILLSGPPGCGKTLLARELARLLGAREPQIVNGPEILDKFIGEAEKRVRQLFVPAEMEY---AQVGDESA---LHIIILDEMDAIARKRGSSAGDNTGVRDSVVNQ 475
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BLAST of mRNA_H-elongata_contig87069.16256.1 vs. uniprot
Match: A0A448ZKH4_9STRA (Vesicle-fusing ATPase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKH4_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.170e-44
Identity = 91/141 (64.54%), Postives = 115/141 (81.56%), Query Frame = 1 
Query:  790 VGGLDSQLDDIVRRVLSTRSLPAELRQALGVSHVRGLLLYGPPGCGKTLLARELSRRLGARPPKLVSGPEILDKWVGEAERKVRLLFLDAELEHQRCVQIGEDPAGLPLNLVCFDEIDALCRRRGSLSGDTSGVRDSVVNQ 1212
            VGGLD QL+DIVRRVL++R+ P E+ + LGV HVRG+LL GPPGCGKTLLARELS  LGAR P++V+GPEILDK+VGEAE+ VR LF  AE+E+    Q+G+  A   L+++  DE+DA+ RRRGS+SGD++GVRDSVVNQ
Sbjct:  357 VGGLDDQLNDIVRRVLASRANP-EMTRKLGVKHVRGILLSGPPGCGKTLLARELSAMLGAREPQIVNGPEILDKFVGEAEKNVRALFRPAEVEYD---QVGDASA---LHVIILDELDAIARRRGSVSGDSTGVRDSVVNQ 490
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BLAST of mRNA_H-elongata_contig87069.16256.1 vs. uniprot
Match: A0A7S4AUL9_9STRA (Vesicle-fusing ATPase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AUL9_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.210e-44
Identity = 91/141 (64.54%), Postives = 116/141 (82.27%), Query Frame = 1 
Query:  790 VGGLDSQLDDIVRRVLSTRSLPAELRQALGVSHVRGLLLYGPPGCGKTLLARELSRRLGARPPKLVSGPEILDKWVGEAERKVRLLFLDAELEHQRCVQIGEDPAGLPLNLVCFDEIDALCRRRGSLSGDTSGVRDSVVNQ 1212
            VGGLD QL+DIVRRVL++R+ P E+ + LGV+HVRG+LL GPPGCGKTLLARELS  LGAR P++V+GPEILDK+VGEAE+ VR LF  AE+E+    Q+G+  A   L+++  DE+DA+ RRRGS+SGD++GVRDSVVNQ
Sbjct:  362 VGGLDDQLNDIVRRVLASRANP-EVARRLGVNHVRGILLSGPPGCGKTLLARELSSMLGAREPQIVNGPEILDKFVGEAEKNVRALFRPAEVEYD---QVGDASA---LHVIVLDELDAIARRRGSVSGDSTGVRDSVVNQ 495
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87069.16256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LEA1_9PHAE1.010e-19472.66Vesicle-fusing ATPase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A836CBN6_9STRA2.200e-11253.35Vesicle-fusing ATPase n=1 Tax=Tribonema minus TaxI... [more]
A0A1E7FWZ3_9STRA1.190e-4964.54Vesicle-fusing ATPase (Fragment) n=1 Tax=Fragilari... [more]
A0A7S1ZM88_TRICV5.010e-4965.96Vesicle-fusing ATPase (Fragment) n=1 Tax=Trieres c... [more]
A0A8J9TMG8_PHATR2.090e-4662.41Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S2M5J1_9STRA5.240e-4665.25Vesicle-fusing ATPase n=1 Tax=Skeletonema marinoi ... [more]
A0A8J2SL94_9STRA1.220e-4564.24Vesicle-fusing ATPase n=1 Tax=Pelagomonas calceola... [more]
A0A7S3QJ62_9STRA1.080e-4463.12Vesicle-fusing ATPase (Fragment) n=1 Tax=Chaetocer... [more]
A0A448ZKH4_9STRA2.170e-4464.54Vesicle-fusing ATPase n=1 Tax=Pseudo-nitzschia mul... [more]
A0A7S4AUL9_9STRA2.210e-4464.54Vesicle-fusing ATPase n=1 Tax=Pseudo-nitzschia aus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87069contigH-elongata_contig87069:1..2429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score593.6
Seed ortholog evalue7e-167
Seed eggNOG ortholog2880.D8LSL6
KEGG koko:K06027
KEGG TC1.F.1.1
KEGG Pathwayko04138,ko04721,ko04727,ko04962,map04138,map04721,map04727,map04962
GOsGO:0000166,GO:0000502,GO:0000731,GO:0002020,GO:0002082,GO:0002790,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0006139,GO:0006140,GO:0006163,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006897,GO:0006909,GO:0006914,GO:0006919,GO:0006928,GO:0006950,GO:0006974,GO:0007034,GO:0007041,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009109,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009306,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010918,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016504,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018193,GO:0018196,GO:0018279,GO:0019058,GO:0019079,GO:0019219,GO:0019220,GO:0019222,GO:0019362,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019899,GO:0019902,GO:0019903,GO:0019904,GO:0019941,GO:0019985,GO:0022411,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030162,GO:0030163,GO:0030177,GO:0030234,GO:0030433,GO:0030554,GO:0030808,GO:0030810,GO:0030970,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031593,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032509,GO:0032510,GO:0032527,GO:0032553,GO:0032555,GO:0032559,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033554,GO:0034098,GO:0034214,GO:0034404,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034976,GO:0035639,GO:0035800,GO:0035861,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036435,GO:0036503,GO:0036513,GO:0040011,GO:0042175,GO:0042176,GO:0042221,GO:0042287,GO:0042288,GO:0042325,GO:0042327,GO:0042391,GO:0042726,GO:0042728,GO:0042802,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043280,GO:0043281,GO:0043412,GO:0043413,GO:0043457,GO:0043467,GO:0043531,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045732,GO:0045838,GO:0045862,GO:0045935,GO:0045937,GO:0045981,GO:0046034,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046903,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0051788,GO:0051881,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0060828,GO:0061134,GO:0061136,GO:0061857,GO:0061919,GO:0062012,GO:0062013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070085,GO:0070647,GO:0070727,GO:0070841,GO:0070842,GO:0070887,GO:0071218,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071712,GO:0071840,GO:0071897,GO:0071985,GO:0072387,GO:0072389,GO:0072521,GO:0072524,GO:0080090,GO:0090085,GO:0090263,GO:0090304,GO:0090734,GO:0097159,GO:0097352,GO:0097367,GO:0098657,GO:0098772,GO:0098796,GO:0098827,GO:0140030,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1902494,GO:1903003,GO:1903004,GO:1903006,GO:1903007,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903513,GO:1903578,GO:1903580,GO:1903715,GO:1903862,GO:1904288,GO:1904949,GO:1905368,GO:1905369,GO:1990381,GO:1990730,GO:2000058,GO:2000060,GO:2000116,GO:2000152,GO:2000158,GO:2001056,GO:2001169,GO:2001171
EggNOG free text desc.SNARE complex disassembly
EggNOG OGsCOG0464@1,KOG0741@2759
EC3.6.4.6
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categorymitochondrion
Exons5
Model size1212
Cds size1212
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87069.16256.1prot_H-elongata_contig87069.16256.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87069 1..2429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931271.652687-CDS-H-elongata_contig87069:0..1361622931271.652687-CDS-H-elongata_contig87069:0..136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87069 1..136 -
1691679768.014191-CDS-H-elongata_contig87069:0..1361691679768.014191-CDS-H-elongata_contig87069:0..136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87069 1..136 -
1622931271.673743-CDS-H-elongata_contig87069:374..5891622931271.673743-CDS-H-elongata_contig87069:374..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87069 375..589 -
1691679768.0277185-CDS-H-elongata_contig87069:374..5891691679768.0277185-CDS-H-elongata_contig87069:374..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87069 375..589 -
1622931271.688101-CDS-H-elongata_contig87069:1091..16211622931271.688101-CDS-H-elongata_contig87069:1091..1621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87069 1092..1621 -
1691679768.0368037-CDS-H-elongata_contig87069:1091..16211691679768.0368037-CDS-H-elongata_contig87069:1091..1621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87069 1092..1621 -
1622931271.7017975-CDS-H-elongata_contig87069:1883..19651622931271.7017975-CDS-H-elongata_contig87069:1883..1965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87069 1884..1965 -
1691679768.0459816-CDS-H-elongata_contig87069:1883..19651691679768.0459816-CDS-H-elongata_contig87069:1883..1965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87069 1884..1965 -
1622931271.7147202-CDS-H-elongata_contig87069:2180..24291622931271.7147202-CDS-H-elongata_contig87069:2180..2429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87069 2181..2429 -
1691679768.060386-CDS-H-elongata_contig87069:2180..24291691679768.060386-CDS-H-elongata_contig87069:2180..2429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87069 2181..2429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87069.16256.1

>prot_H-elongata_contig87069.16256.1 ID=prot_H-elongata_contig87069.16256.1|Name=mRNA_H-elongata_contig87069.16256.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=404bp
LRQAVRRTVERARQRSRHSDDSAMTWSWLTLSPRPVRVTLASGDPRFGVY
LTVLPAGKGSPPSHRPMYGCHMLSRVLAGEIEQVKSNSQRVIGRSTHSLE
TPVWSSYGGGARRLVNEGFLPAVILEVILYDWSRGSGYSGSYAAPGTSNS
GSAERRAEADEIGAAAIVKGTEIGAVSTRGVVSIVAMDACPCPPAALFRD
GDVYDEEEDMDGRDGVRLALVRRDGKPMTAPAAGGQGGGASSDGLAGGSG
FSELFTADELACDVGGLDSQLDDIVRRVLSTRSLPAELRQALGVSHVRGL
LLYGPPGCGKTLLARELSRRLGARPPKLVSGPEILDKWVGEAERKVRLLF
LDAELEHQRCVQIGEDPAGLPLNLVCFDEIDALCRRRGSLSGDTSGVRDS
VVNQ
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mRNA from alignment at H-elongata_contig87069:1..2429-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87069.16256.1 ID=mRNA_H-elongata_contig87069.16256.1|Name=mRNA_H-elongata_contig87069.16256.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2429bp|location=Sequence derived from alignment at H-elongata_contig87069:1..2429- (Himanthalia elongata Himel1 dioecious)
CTCCGACAGGCGGTGAGGCGTACCGTGGAGCGCGCTCGGCAGCGCTCTCG
TCACTCGGACGACTCTGCTATGACCTGGTCCTGGCTGACGCTCTCCCCGC
GCCCCGTCCGGGTCACGCTTGCATCGGGAGACCCGCGCTTCGGCGTGTAC
CTGACGGTGCTTCCCGCGGGAAAAGGAAGCCCTCCATCTCATCGCCCTAT
GTACGGGTGCCACATGCTGTCGCGAGTTTTGGCAGGAGAGATAGAACAGG
TGACGGTTTCCTTGGGCTTAGATAGGGTACGGCGGGATGGTTGACAACAA
TCTAGGCTGCATTTTGAGGGCGCACATCTTTCGTTTAACCCCTTCCGCCA
TCATCACCCGCGCTTCGCCCCCGAAGTAACGCGGAGGGAGCGCATAAGCA
TACGTACTATTTCTACGCCTTTGGTAATCATGGTGGTTGTGTCGCATTGA
TTGATCCAGTGTAGGTAAAATCGAACAGCCAGCGAGTGATTGGGAGGTCT
ACGCATTCACTGGAAACGCCTGTGTGGTCGAGCTACGGCGGGGGAGGTGT
GTATATTACAGTATCTCTACATAAATGATAATGTGTTCATGGCTATCTGT
GTGACGTCTGGTCGAGATCAACATGTCTTATCTAATTTGAACGATGTATG
GAATCTTTCCGCGTACGTTCGTTCCTCTTTGCGAGACTCTTCAGCCCCTC
TTTTCCCTTCCTCCCCAATCGACAGCGTTATTGCGACCCTTTAAAGTGTT
TGTACCTCACCTTCCCACGTCTCGTTCTTGAATGGCCGCGTCGACTACTT
CCACCCAGCACGACGCTTGGTCAACGAAGGCTTTCTGCCAGCAGTCATTT
TAGAGGTTATTCTGTACGACTGGTCACGCGGATCGGGCTATTCGGGTAGC
TATGCCGCCCCTGGGACCAGCAATTCGGGCTCGGCGGAACGTCGAGCGGA
GGCGGACGAAATCGGGGCGGCGGCGATTGTCAAGGGCACGGAAATAGGGG
CAGTTTCCACCCGCGGGGTTGTTTCCATCGTTGCCATGGATGCTTGCCCC
TGCCCACCAGCGGCACTTTTCCGAGACGGCGATGTTTACGATGAAGAGGA
AGACATGGATGGGAGAGATGGAGTGCGGTTGGCCCTCGTACGCAGGGACG
GGAAACCCATGACGGCACCCGCGGCTGGAGGACAGGGAGGTGGAGCTAGT
TCCGACGGTCTCGCCGGAGGGAGCGGGTTCAGCGAGTTATTTACAGCGGA
TGAGCTGGCGTGTGACGTGGGCGGGCTCGACAGCCAGCTGGACGATATCG
TTAGGAGGGTGCTGTCGACGAGATCGCTCCCTGCCGAGGTGAGATGTTTA
CGAAAAGCGAAGATACTTCAGGTCTTTCACCCCCGCACCGCACACTCATG
TATATAACCCAGCAGTATTTCTTCTTCTTGGACTGGTTCGTGCCCCTCCT
GCGGCGTTTCAGCAGCGTACGTACGTGTCGTCCTCTGAATGTAATTTCCC
ATCGGCGATGACGATTCCTGCTTTCCCCTTTTCTGACATCCAGAAGTTTG
ATTTGCCGCCAATCTTCAGTCGCTAGGCTGCGCTGCTCTGACCACGAACG
TGGCCCCCTTCTACGCTATGCATGTTCAACGGCCACGAGGGCCTGCGTCG
TGCTCCTGCAGACCTCATCAAACCTCACTACGAGTAGATACAAACCCACC
AAGGAGAAAGCACATCGATGTATGTGCGTCTTAGAGAAAAGTTCGTGAAT
AAACCTTAGCGGAAGAGCTTCCCGCGGACATGTCGCCTGAACTTACTTTC
CATATTTCCCCTTACGCGTAATGTACTGTTGCTCTATCAGCTTCGACAAG
CACTGGGGGTGAGTCACGTCCGCGGTCTCCTGTTGTACGGGCCTCCCGGC
TGCGGCAAGACTCTGCTAGCAAGAGAGCTGAGTCGACGCCTTGGGGCACG
GCCGCCAAAGCTCGTCAGCGGGCCGGAGATACTGGATAAATGGGTCGGAG
AGGCGGAGCGAAAAGTGCGATTACTCTTCCTCGACGCCGAGCTTGAGCAC
CAGAGGTCAGGAGGGACTCGGGGACATTACGGGGGGTCTCGGGAAGCGTC
AAAGTACTACCAAACGGAGGCAGAACCTACTCTTGTGGTGATTATGCGTT
GCTTTACGCCCATTTTTTTTTTTTCGAGAGGATTGTGTAGCTTCTGTGTG
CTCACGCTATGGTGACGCCTTAGTCCCCTGTTTCTTCTTTCCTCAACCTC
CTTGTGCTGTATTATAATAATGTGAAACAAACCAATGCACCAGGTGTGTG
CAGATAGGGGAAGATCCGGCAGGGCTGCCGCTGAATCTTGTGTGTTTCGA
CGAGATCGATGCTCTTTGCCGAAGGAGGGGGTCGCTTTCTGGCGATACGT
CAGGGGTGCGTGATAGCGTCGTCAATCAG
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Coding sequence (CDS) from alignment at H-elongata_contig87069:1..2429-

>mRNA_H-elongata_contig87069.16256.1 ID=mRNA_H-elongata_contig87069.16256.1|Name=mRNA_H-elongata_contig87069.16256.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2424bp|location=Sequence derived from alignment at H-elongata_contig87069:1..2429- (Himanthalia elongata Himel1 dioecious)
CTCCGACAGGCGGTGAGGCGTACCGTGGAGCGCGCTCGGCAGCGCTCTCG
TCACTCGGACGACTCTGCTATGACCTGGTCCTGGCTGACGCTCTCCCCGC
GCCCCGTCCGGGTCACGCTTGCATCGGGAGACCCGCGCTTCGGCGTGTAC
CTGACGGTGCTTCCCGCGGGAAAAGGAAGCCCTCCATCTCATCGCCCTAT
GTACGGGTGCCACATGCTGTCGCGAGTTTTGGCAGGAGAGATAGAACAGC
TCCGACAGGCGGTGAGGCGTACCGTGGAGCGCGCTCGGCAGCGCTCTCGT
CACTCGGACGACTCTGCTATGACCTGGTCCTGGCTGACGCTCTCCCCGCG
CCCCGTCCGGGTCACGCTTGCATCGGGAGACCCGCGCTTCGGCGTGTACC
TGACGGTGCTTCCCGCGGGAAAAGGAAGCCCTCCATCTCATCGCCCTATG
TACGGGTGCCACATGCTGTCGCGAGTTTTGGCAGGAGAGATAGAACAGGT
AAAATCGAACAGCCAGCGAGTGATTGGGAGGTCTACGCATTCACTGGAAA
CGCCTGTGTGGTCGAGCTACGGCGGGGGAGGTAAAATCGAACAGCCAGCG
AGTGATTGGGAGGTCTACGCATTCACTGGAAACGCCTGTGTGGTCGAGCT
ACGGCGGGGGAGCACGACGCTTGGTCAACGAAGGCTTTCTGCCAGCAGTC
ATTTTAGAGGTTATTCTGTACGACTGGTCACGCGGATCGGGCTATTCGGG
TAGCTATGCCGCCCCTGGGACCAGCAATTCGGGCTCGGCGGAACGTCGAG
CGGAGGCGGACGAAATCGGGGCGGCGGCGATTGTCAAGGGCACGGAAATA
GGGGCAGTTTCCACCCGCGGGGTTGTTTCCATCGTTGCCATGGATGCTTG
CCCCTGCCCACCAGCGGCACTTTTCCGAGACGGCGATGTTTACGATGAAG
AGGAAGACATGGATGGGAGAGATGGAGTGCGGTTGGCCCTCGTACGCAGG
GACGGGAAACCCATGACGGCACCCGCGGCTGGAGGACAGGGAGGTGGAGC
TAGTTCCGACGGTCTCGCCGGAGGGAGCGGGTTCAGCGAGTTATTTACAG
CGGATGAGCTGGCGTGTGACGTGGGCGGGCTCGACAGCCAGCTGGACGAT
ATCGTTAGGAGGGTGCTGTCGACGAGATCGCTCCCTGCCGAGCACGACGC
TTGGTCAACGAAGGCTTTCTGCCAGCAGTCATTTTAGAGGTTATTCTGTA
CGACTGGTCACGCGGATCGGGCTATTCGGGTAGCTATGCCGCCCCTGGGA
CCAGCAATTCGGGCTCGGCGGAACGTCGAGCGGAGGCGGACGAAATCGGG
GCGGCGGCGATTGTCAAGGGCACGGAAATAGGGGCAGTTTCCACCCGCGG
GGTTGTTTCCATCGTTGCCATGGATGCTTGCCCCTGCCCACCAGCGGCAC
TTTTCCGAGACGGCGATGTTTACGATGAAGAGGAAGACATGGATGGGAGA
GATGGAGTGCGGTTGGCCCTCGTACGCAGGGACGGGAAACCCATGACGGC
ACCCGCGGCTGGAGGACAGGGAGGTGGAGCTAGTTCCGACGGTCTCGCCG
GAGGGAGCGGGTTCAGCGAGTTATTTACAGCGGATGAGCTGGCGTGTGAC
GTGGGCGGGCTCGACAGCCAGCTGGACGATATCGTTAGGAGGGTGCTGTC
GACGAGATCGCTCCCTGCCGAGCTTCGACAAGCACTGGGGGTGAGTCACG
TCCGCGGTCTCCTGTTGTACGGGCCTCCCGGCTGCGGCAAGACTCTGCTA
GCAAGAGAGCTGAGTCGACGCCTTGGGGCACGGCCGCCAAAGCTCGTCAG
CGGGCCGGAGATACTGGATAAATGGGTCGGAGAGGCGGAGCGAAAAGTGC
GATTACTCTTCCTCGACGCCGAGCTTGAGCACCAGAGCTTCGACAAGCAC
TGGGGGTGAGTCACGTCCGCGGTCTCCTGTTGTACGGGCCTCCCGGCTGC
GGCAAGACTCTGCTAGCAAGAGAGCTGAGTCGACGCCTTGGGGCACGGCC
GCCAAAGCTCGTCAGCGGGCCGGAGATACTGGATAAATGGGTCGGAGAGG
CGGAGCGAAAAGTGCGATTACTCTTCCTCGACGCCGAGCTTGAGCACCAG
AGGTGTGTGCAGATAGGGGAAGATCCGGCAGGGCTGCCGCTGAATCTTGT
GTGTTTCGACGAGATCGATGCTCTTTGCCGAAGGAGGGGGTCGCTTTCTG
GCGATACGTCAGGGGTGCGTGATAGCGTCGTCAATCAGGTGTGTGCAGAT
AGGGGAAGATCCGGCAGGGCTGCCGCTGAATCTTGTGTGTTTCGACGAGA
TCGATGCTCTTTGCCGAAGGAGGGGGTCGCTTTCTGGCGATACGTCAGGG
GTGCGTGATAGCGTCGTCAATCAG
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