mRNA_H-elongata_contig8701.16251.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8701.16251.1
Unique NamemRNA_H-elongata_contig8701.16251.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8701.16251.1 vs. uniprot
Match: D7FMR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR0_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 4.260e-38
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:    1 MDPFDPDMIIHVLSRCEACQLGQVGTRVCVEKGHMATVASVKRSALGNNFVDPYTEEEVDARYRLMLKPGE 213
            MDPFDPD IIHVLSRCEACQ+GQVGTRVCVEKGH ATVASVKRSA G+NFVDPYTEEEVDARYRLMLKPGE
Sbjct:    1 MDPFDPDAIIHVLSRCEACQMGQVGTRVCVEKGHHATVASVKRSARGSNFVDPYTEEEVDARYRLMLKPGE 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8701.16251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMR0_ECTSI4.260e-3892.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8701contigH-elongata_contig8701:8548..9757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931271.027569-CDS-H-elongata_contig8701:8547..86161622931271.027569-CDS-H-elongata_contig8701:8547..8616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8701 8548..8616 +
1691679767.757711-CDS-H-elongata_contig8701:8547..86161691679767.757711-CDS-H-elongata_contig8701:8547..8616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8701 8548..8616 +
1622931271.0958939-CDS-H-elongata_contig8701:9613..97571622931271.0958939-CDS-H-elongata_contig8701:9613..9757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8701 9614..9757 +
1691679767.7659261-CDS-H-elongata_contig8701:9613..97571691679767.7659261-CDS-H-elongata_contig8701:9613..9757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8701 9614..9757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8701.16251.1prot_H-elongata_contig8701.16251.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8701 8548..9757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8701.16251.1

>prot_H-elongata_contig8701.16251.1 ID=prot_H-elongata_contig8701.16251.1|Name=mRNA_H-elongata_contig8701.16251.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MDPFDPDMIIHVLSRCEACQLGQVGTRVCVEKGHMATVASVKRSALGNNF
VDPYTEEEVDARYRLMLKPGE
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mRNA from alignment at H-elongata_contig8701:8548..9757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8701.16251.1 ID=mRNA_H-elongata_contig8701.16251.1|Name=mRNA_H-elongata_contig8701.16251.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1210bp|location=Sequence derived from alignment at H-elongata_contig8701:8548..9757+ (Himanthalia elongata Himel1 dioecious)
ATGGATCCGTTCGATCCTGACATGATCATTCACGTGCTGTCGAGATGTGA
GGCCTGTCAACTTGGACAGGTAATATCGCGTCGCTCCCACCTGCGTTCAG
GAATCCGTGATGTCGAGCCATTAAGTACAGGGGCAGCAGAGAGGAAGAAA
TATCGACATGACCTTTATGCCGTGGCAGATGTAGAGCTTGTCATAGCGGG
TCTCCTCGTTTTAGACGTAGGTCCTTGGGTCCGAGACCCTATAATATTAT
CTGCGGGATACCATTACTGTACGTGATCCCCCTCGCCCCCCCCCACGCCT
GCATGGTGTCCGGCGCTTATCCTCAAATAATTAAACCCAACCTCTCTGAT
CTCGAGTCGTGCCTAGTTGGATACGAGGTGCTGTACCTAGCTTCTAAAAG
CACTATTTAATACAAGTAGTAGATAAGACTCCTACGGTAGGCCCTGCTTT
TTATCTTAAAAAACATAAAGCTAATGCAAACTCTCCGAACATTCACGCCC
TCTTCCTAGTAGCACCGTGAGAGGTGCATGCAGTCCAGGGGACCAACTAT
CATCTTAAATATTATAAAATTATCTTGTTCGCTTCAAGAGCTCCACACAT
ATAGCTGCAGTTGTCTCACTACAAACATCCTTATATATAGTACTTATGTA
ACGAGCGTGTCTCTTTATGGGAGAAGATTGTACAGCGTTGTCAATTCCTC
GTGCACGGTGCGATGCGTCGTTGTTTGGACGTTTATTGCCTGCCGAGGGA
GGGTTGATCTCTCTGAAGATTGATGACACCGTCGCACAACCCCGACGAGA
CTGGCCCTTATCGCCTCGAACCAAGGAAACAGCACTCCGTACACTCAATA
TAATTAGCTATACACCCCGTACTGCCTTGCCTCCCGTCATCGTACAACTC
CCCCTCGCCTTTACAAGCCTCCCCCGCCTGAAAAACTAAATCTAACCTCT
TCCCCATCGGTGCCACGAAGAAACCGCAGTGTGGTCCAGGTGTGTGGTTG
CAAATAAAATAAAACGATCTGCGTCTGTGTTTCCCCTCCGTCCCTGTCCC
CGTCCTTTGAACTCAGGTCGGTACCCGCGTGTGCGTGGAGAAGGGCCACA
TGGCGACCGTCGCCAGCGTCAAGCGATCAGCCCTCGGAAACAACTTCGTC
GATCCTTACACAGAGGAAGAGGTCGATGCGCGCTACCGCCTCATGCTCAA
GCCCGGCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig8701:8548..9757+

>mRNA_H-elongata_contig8701.16251.1 ID=mRNA_H-elongata_contig8701.16251.1|Name=mRNA_H-elongata_contig8701.16251.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig8701:8548..9757+ (Himanthalia elongata Himel1 dioecious)
ATGGATCCGTTCGATCCTGACATGATCATTCACGTGCTGTCGAGATGTGA
GGCCTGTCAACTTGGACAGATGGATCCGTTCGATCCTGACATGATCATTC
ACGTGCTGTCGAGATGTGAGGCCTGTCAACTTGGACAGGTCGGTACCCGC
GTGTGCGTGGAGAAGGGCCACATGGCGACCGTCGCCAGCGTCAAGCGATC
AGCCCTCGGAAACAACTTCGTCGATCCTTACACAGAGGAAGAGGTCGATG
CGCGCTACCGCCTCATGCTCAAGCCCGGCGAGGTCGGTACCCGCGTGTGC
GTGGAGAAGGGCCACATGGCGACCGTCGCCAGCGTCAAGCGATCAGCCCT
CGGAAACAACTTCGTCGATCCTTACACAGAGGAAGAGGTCGATGCGCGCT
ACCGCCTCATGCTCAAGCCCGGCGAG
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