mRNA_H-elongata_contig86999.16246.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86999.16246.1
Unique NamemRNA_H-elongata_contig86999.16246.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86999.16246.1 vs. uniprot
Match: A0A0D2E177_9EURO (Cysteine dioxygenase n=1 Tax=Exophiala xenobiotica TaxID=348802 RepID=A0A0D2E177_9EURO)

HSP 1 Score: 85.5 bits (210), Expect = 1.060e-17
Identity = 48/125 (38.40%), Postives = 63/125 (50.40%), Query Frame = 1 
Query:    1 NTSFDLLMLRWGPQAVSPVDVHPETSCWMKILKGDLRATRYTVG-ADNDGGHKVCDGSSVVEFIKRHDIGIDIDGEEGNRHPLGEDSSSTYTTGGVTYIEDFVGVHNMANPSPTEESVSLHLYTP 372
            N   +LL+L W P   SP+  H +  C MKILKG L+ T Y+V    +D G +   GS     I++  +                     Y    VTYI D +GVH ++NPSPTE +VSLHLYTP
Sbjct:  102 NGKSNLLLLVWNPGKASPIHDHADAHCVMKILKGTLQETLYSVPPCSSDNGSESSSGSITPPQIRKETL---------------------YHENQVTYISDKIGVHKISNPSPTEVAVSLHLYTP 205
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BLAST of mRNA_H-elongata_contig86999.16246.1 vs. uniprot
Match: UPI0018CFE0D5 (cysteine dioxygenase type 1 n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CFE0D5)

HSP 1 Score: 84.7 bits (208), Expect = 1.940e-17
Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 1 
Query:    1 NTSFDLLMLRWGPQAVSPVDVHPETSCWMKILKGDLRATRYTVGADNDGGHKVCDGSSVVEFIKRHDIGIDIDGEEGNRHP---LGEDSSSTYTTGGVTYIEDFVGVHNMANPSPTEESVSLHLYTPGITKCS 390
            N  F+L++L WG    S +  H ++ C+MK+LKG+L+ TRY +        K    S+ +E     DIG +I+ EE +      L E   S   T  V YI D +G+H + NPS ++ SVSLHLY P    CS
Sbjct:   94 NGKFNLMILCWGEGHSSAIHDHADSHCFMKMLKGELKETRYEMP-------KTVHTSTTIEA----DIGRNIEDEEHDEFDSAELQETGHSQILTNDVAYINDNLGLHRVENPSHSDTSVSLHLYCPPFNSCS 215
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BLAST of mRNA_H-elongata_contig86999.16246.1 vs. uniprot
Match: A0A034WKK9_BACDO (Cysteine dioxygenase n=10 Tax=Endopterygota TaxID=33392 RepID=A0A034WKK9_BACDO)

HSP 1 Score: 83.6 bits (205), Expect = 1.140e-16
Identity = 47/135 (34.81%), Postives = 68/135 (50.37%), Query Frame = 1 
Query:    1 NTSFDLLMLRWGPQAVSPVDVHPETSCWMKILKGDLRATRYTVGADNDGGHKVCDGSSVVEFIKRHDIGIDIDGEEGNRH-----PLGEDSSSTYTTGGVTYIEDFVGVHNMANPSPTEESVSLHLYTPGITKCS 390
            N  F+L++L WG    S +  H ++ C+MK+LKGDL+ TRY +             +  +E     DIG  +D +    H      L  +  +T T   V YI D +G+H + NPS  E +VSLHLY P   +CS
Sbjct:  144 NGKFNLMILCWGEGQGSAIHDHADSHCFMKMLKGDLKETRYKMPC-----------TQAIEMSNGVDIG-QMDSDSEGEHVFDSAELTPEGDTTITVNDVAYINDNLGLHRVENPSHIETAVSLHLYCPPFDECS 266
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BLAST of mRNA_H-elongata_contig86999.16246.1 vs. uniprot
Match: A0A0A1XFR7_ZEUCU (Cysteine dioxygenase n=3 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1XFR7_ZEUCU)

HSP 1 Score: 82.0 bits (201), Expect = 4.510e-16
Identity = 50/134 (37.31%), Postives = 70/134 (52.24%), Query Frame = 1 
Query:    1 NTSFDLLMLRWGPQAVSPVDVHPETSCWMKILKGDLRATRYTVGADNDGGHKVCDGSSVVEFIKRHDIG---IDIDGE-EGNRHPLGEDSSSTYTTGGVTYIEDFVGVHNMANPSPTEESVSLHLYTPGITKCS 390
            N  F+L++L WG    S +  H ++ C+MK+LKGDL+ TRY +            G+  +E +   DIG    D DGE E +   L     +T     V YI D +G+H + NPS  E +VSLHLY P   +CS
Sbjct:  149 NGKFNLMILCWGEGQGSAIHDHADSHCFMKMLKGDLKETRYKMP-----------GTKAIE-LPNVDIGQMVCDSDGEREFDSEQLTAVGDTTIGVNDVAYINDNLGLHRVENPSHIETAVSLHLYCPPFNECS 270
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BLAST of mRNA_H-elongata_contig86999.16246.1 vs. uniprot
Match: A0A0D2FJB1_9EURO (Cysteine dioxygenase n=1 Tax=Rhinocladiella mackenziei CBS 650.93 TaxID=1442369 RepID=A0A0D2FJB1_9EURO)

HSP 1 Score: 77.8 bits (190), Expect = 8.250e-15
Identity = 45/124 (36.29%), Postives = 59/124 (47.58%), Query Frame = 1 
Query:    1 NTSFDLLMLRWGPQAVSPVDVHPETSCWMKILKGDLRATRYTVGADNDGGHKVCDGSSVVEFIKRHDIGIDIDGEEGNRHPLGEDSSSTYTTGGVTYIEDFVGVHNMANPSPTEESVSLHLYTP 372
            N   +LL++ W P   SP+  H    C MKILKG+LR T Y++          C                   G  G+  P      +TY    VTYI D +G+H ++NPSP E +VSLHLYTP
Sbjct:  100 NGKSNLLVVVWNPGRCSPIHDHANAHCVMKILKGNLRETLYSMPP--------CSSEQT--------------GSSGSLTPPQIVKETTYFENQVTYISDKIGLHKISNPSPDEAAVSLHLYTP 201
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BLAST of mRNA_H-elongata_contig86999.16246.1 vs. uniprot
Match: H6BK72_EXODN (Cysteine dioxygenase n=1 Tax=Exophiala dermatitidis (strain ATCC 34100 / CBS 525.76 / NIH/UT8656) TaxID=858893 RepID=H6BK72_EXODN)

HSP 1 Score: 77.8 bits (190), Expect = 8.900e-15
Identity = 45/128 (35.16%), Postives = 63/128 (49.22%), Query Frame = 1 
Query:    1 NTSFDLLMLRWGPQAVSPVDVHPETSCWMKILKGDLRATRYTVGA----DNDGGHKVCDGSSVVEFIKRHDIGIDIDGEEGNRHPLGEDSSSTYTTGGVTYIEDFVGVHNMANPSPTEESVSLHLYTP 372
            N   +LL++ W P   SP+  H    C MKILKG+L+ T Y++      D+D G     G S    I +                      ++Y+   VTYI D +G+H ++NPS TE +VSLHLYTP
Sbjct:  100 NGKSNLLVVVWNPGRCSPIHDHANAHCVMKILKGNLKETLYSLPQCQPDDSDTGGSDSSGRSTPPQIVKE---------------------TSYSENQVTYISDKIGLHKISNPSQTEVAVSLHLYTP 206
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BLAST of mRNA_H-elongata_contig86999.16246.1 vs. uniprot
Match: A0A0D2DQT4_9EURO (Cysteine dioxygenase n=1 Tax=Exophiala oligosperma TaxID=215243 RepID=A0A0D2DQT4_9EURO)

HSP 1 Score: 77.4 bits (189), Expect = 1.170e-14
Identity = 43/124 (34.68%), Postives = 59/124 (47.58%), Query Frame = 1 
Query:    1 NTSFDLLMLRWGPQAVSPVDVHPETSCWMKILKGDLRATRYTVGADNDGGHKVCDGSSVVEFIKRHDIGIDIDGEEGNRHPLGEDSSSTYTTGGVTYIEDFVGVHNMANPSPTEESVSLHLYTP 372
            N   +LL+L W P   SP+  H +  C MK+LKG+L+ T Y+V            GS+    I +  +                     Y    VTYI D +GVH ++NPS TE ++SLHLYTP
Sbjct:  100 NGKSNLLLLVWNPCKSSPIHDHADAHCVMKVLKGNLKETLYSVPPGQSDSDCSSSGSATPPQIVKETL---------------------YHENQVTYISDKIGVHKISNPSLTEVAISLHLYTP 202
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BLAST of mRNA_H-elongata_contig86999.16246.1 vs. uniprot
Match: A0A6A6SW48_9PLEO (Cysteine dioxygenase n=1 Tax=Lophiostoma macrostomum CBS 122681 TaxID=1314788 RepID=A0A6A6SW48_9PLEO)

HSP 1 Score: 76.6 bits (187), Expect = 1.460e-14
Identity = 46/127 (36.22%), Postives = 63/127 (49.61%), Query Frame = 1 
Query:    1 NTSFDLLMLRWGPQAVSPVDVHPETSCWMKILKGDLRATRY---TVGADNDGGHKVCDGSSVVEFIKRHDIGIDIDGEEGNRHPLGEDSSSTYTTGGVTYIEDFVGVHNMANPSPTEESVSLHLYTP 372
            N   +LL+L W P   SPV  H    C MKILKG L+ TRY   T+  +N               ++R               PL  +  +TY+   VTY+ D +G+H ++NPSP + +VSLHLYTP
Sbjct:   85 NGKCNLLILVWSPGKGSPVHDHANAHCVMKILKGQLKETRYHWPTIELNNS--------------VQR---------------PLEIEQETTYSADEVTYMSDKLGLHKISNPSPDDFAVSLHLYTP 182
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BLAST of mRNA_H-elongata_contig86999.16246.1 vs. uniprot
Match: A0A0D2BAQ4_9EURO (Cysteine dioxygenase n=1 Tax=Exophiala spinifera TaxID=91928 RepID=A0A0D2BAQ4_9EURO)

HSP 1 Score: 76.6 bits (187), Expect = 2.290e-14
Identity = 42/124 (33.87%), Postives = 58/124 (46.77%), Query Frame = 1 
Query:    1 NTSFDLLMLRWGPQAVSPVDVHPETSCWMKILKGDLRATRYTVGADNDGGHKVCDGSSVVEFIKRHDIGIDIDGEEGNRHPLGEDSSSTYTTGGVTYIEDFVGVHNMANPSPTEESVSLHLYTP 372
            N   +LL+L W P   SP+  H +  C MK+LKG L+ T Y+V            G++    I +  +                     Y    VTYI D +GVH ++NPS TE ++SLHLYTP
Sbjct:  100 NGKSNLLLLVWNPCKASPIHDHADAHCVMKVLKGTLKETLYSVPPGQSESDSSSPGAATPPQIVKETL---------------------YHENQVTYISDKIGVHKISNPSLTEVAISLHLYTP 202
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BLAST of mRNA_H-elongata_contig86999.16246.1 vs. uniprot
Match: A0A6G3MK35_HENSL (Cysteine dioxygenase (Fragment) n=1 Tax=Henneguya salminicola TaxID=69463 RepID=A0A6G3MK35_HENSL)

HSP 1 Score: 72.8 bits (177), Expect = 4.380e-14
Identity = 36/124 (29.03%), Postives = 57/124 (45.97%), Query Frame = 1 
Query:   16 LLMLRWGPQAVSPVDVHPETSCWMKILKGDLRATRYTVGADNDGGHKVCDGSSVVEFIKRHDIGIDIDGEEGNRHPLGEDSSSTYTTGGVTYIEDFVGVHNMANPSPTEESVSLHLYTPGITKC 387
            +++L W  +  S +  H  + C++K+LKG +R T Y                             +++  +   H L     + YT   V YI D +G+H M NPSPTE+SV++H+Y P   KC
Sbjct:    1 MIVLCWNEKQFSGIHDHSSSHCFVKVLKGKIRETLYN--------------------------NPNLEDNKSQNHSLNVKQETEYTKNKVAYIHDNIGLHKMGNPSPTEKSVTMHIYIPPYKKC 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86999.16246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2E177_9EURO1.060e-1738.40Cysteine dioxygenase n=1 Tax=Exophiala xenobiotica... [more]
UPI0018CFE0D51.940e-1737.59cysteine dioxygenase type 1 n=1 Tax=Teleopsis dalm... [more]
A0A034WKK9_BACDO1.140e-1634.81Cysteine dioxygenase n=10 Tax=Endopterygota TaxID=... [more]
A0A0A1XFR7_ZEUCU4.510e-1637.31Cysteine dioxygenase n=3 Tax=Zeugodacus cucurbitae... [more]
A0A0D2FJB1_9EURO8.250e-1536.29Cysteine dioxygenase n=1 Tax=Rhinocladiella macken... [more]
H6BK72_EXODN8.900e-1535.16Cysteine dioxygenase n=1 Tax=Exophiala dermatitidi... [more]
A0A0D2DQT4_9EURO1.170e-1434.68Cysteine dioxygenase n=1 Tax=Exophiala oligosperma... [more]
A0A6A6SW48_9PLEO1.460e-1436.22Cysteine dioxygenase n=1 Tax=Lophiostoma macrostom... [more]
A0A0D2BAQ4_9EURO2.290e-1433.87Cysteine dioxygenase n=1 Tax=Exophiala spinifera T... [more]
A0A6G3MK35_HENSL4.380e-1429.03Cysteine dioxygenase (Fragment) n=1 Tax=Henneguya ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86999contigH-elongata_contig86999:608..1198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue9.2e-17
Seed eggNOG ortholog2880.D7FK04
Preferred nameCDO1
KEGG rclassRC00404
KEGG koko:K00456,ko:K05012,ko:K15711
KEGG TC2.A.49.1.1,2.A.49.1.2,2.A.49.1.3,2.A.49.2.2,2.A.49.2.3,2.A.49.2.8
KEGG ReactionR00893
KEGG Pathwayko00270,ko00430,ko01100,map00270,map00430,map01100
GOsGO:0000096,GO:0000097,GO:0000098,GO:0001101,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006090,GO:0006520,GO:0006534,GO:0006790,GO:0006805,GO:0006807,GO:0006810,GO:0006950,GO:0006952,GO:0006954,GO:0007275,GO:0007589,GO:0007595,GO:0008150,GO:0008152,GO:0008198,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009069,GO:0009071,GO:0009093,GO:0009410,GO:0009636,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016020,GO:0016053,GO:0016054,GO:0016491,GO:0016701,GO:0016702,GO:0017172,GO:0019448,GO:0019450,GO:0019451,GO:0019452,GO:0019530,GO:0019694,GO:0019752,GO:0030879,GO:0031960,GO:0032501,GO:0032502,GO:0032787,GO:0033762,GO:0033993,GO:0042221,GO:0042412,GO:0042493,GO:0043167,GO:0043169,GO:0043200,GO:0043434,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044272,GO:0044273,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045471,GO:0046305,GO:0046394,GO:0046395,GO:0046439,GO:0046677,GO:0046683,GO:0046872,GO:0046903,GO:0046914,GO:0048513,GO:0048545,GO:0048731,GO:0048732,GO:0048856,GO:0050878,GO:0050896,GO:0051179,GO:0051213,GO:0051234,GO:0051384,GO:0051591,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0071466,GO:0071704,GO:0071944,GO:0097305,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901652,GO:1901698,GO:1901700
EggNOG free text desc.alkanesulfonate biosynthetic process
EggNOG OGsKOG4064@1,KOG4064@2759
EC1.13.11.20,2.3.2.27
COG Functional cat.C
BiGG ReactioniRC1080.CRv4_Au5_s3_g10641_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400,ko04040,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86999.16246.1prot_H-elongata_contig86999.16246.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86999 629..1198 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931270.0484333-UTR-H-elongata_contig86999:607..6281622931270.0484333-UTR-H-elongata_contig86999:607..628Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86999 608..628 +
1691679767.4717367-UTR-H-elongata_contig86999:607..6281691679767.4717367-UTR-H-elongata_contig86999:607..628Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86999 608..628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931270.0683558-CDS-H-elongata_contig86999:628..6971622931270.0683558-CDS-H-elongata_contig86999:628..697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86999 629..697 +
1691679767.4823878-CDS-H-elongata_contig86999:628..6971691679767.4823878-CDS-H-elongata_contig86999:628..697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86999 629..697 +
1622931270.0906844-CDS-H-elongata_contig86999:892..11981622931270.0906844-CDS-H-elongata_contig86999:892..1198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86999 893..1198 +
1691679767.4906795-CDS-H-elongata_contig86999:892..11981691679767.4906795-CDS-H-elongata_contig86999:892..1198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86999 893..1198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86999.16246.1

>prot_H-elongata_contig86999.16246.1 ID=prot_H-elongata_contig86999.16246.1|Name=mRNA_H-elongata_contig86999.16246.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MLRWGPQAVSPVDVHPETSCWMKILKGDLRATRYTVGADNDGGHKVCDGS
SVVEFIKRHDIGIDIDGEEGNRHPLGEDSSSTYTTGGVTYIEDFVGVHNM
ANPSPTEESVSLHLYTPGITKCST*
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mRNA from alignment at H-elongata_contig86999:608..1198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86999.16246.1 ID=mRNA_H-elongata_contig86999.16246.1|Name=mRNA_H-elongata_contig86999.16246.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=591bp|location=Sequence derived from alignment at H-elongata_contig86999:608..1198+ (Himanthalia elongata Himel1 dioecious)
AACACCAGTTTCGACCTTTTAATGCTGCGCTGGGGACCTCAGGCAGTATC
TCCTGTGGACGTTCACCCTGAAACAAGCTGTTGGATGAAGGTAAGTCAAA
AACTTTATATATAAATATAGAGAAAATGCAATGAATGCTGGGCGCGCCGT
TCAGCGGGTACCCAGTATGCAACTTCCACTGGCATGTGAAAGGGTGGGCG
TCCGGTAGAAGTCGACCGCACGGCCGGCTAAAGATGAAGGGCGAAGGGAA
AACGAAGACGCGATTGCTCGCATGCTCTCACTCAGATACTCAAAGGAGAC
CTTAGGGCCACAAGGTACACGGTCGGGGCAGACAACGATGGCGGACACAA
AGTGTGCGACGGTTCCTCCGTCGTTGAGTTCATCAAACGTCATGATATTG
GTATCGACATCGACGGAGAGGAAGGAAACCGTCACCCTCTGGGCGAAGAT
TCAAGTTCCACTTACACTACAGGTGGGGTGACTTATATCGAAGACTTCGT
GGGAGTTCACAACATGGCGAACCCCAGTCCGACCGAAGAAAGCGTTTCCC
TTCACCTCTATACTCCGGGGATCACTAAGTGCAGCACCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig86999:608..1198+

>mRNA_H-elongata_contig86999.16246.1 ID=mRNA_H-elongata_contig86999.16246.1|Name=mRNA_H-elongata_contig86999.16246.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig86999:608..1198+ (Himanthalia elongata Himel1 dioecious)
ATGCTGCGCTGGGGACCTCAGGCAGTATCTCCTGTGGACGTTCACCCTGA
AACAAGCTGTTGGATGAAGATGCTGCGCTGGGGACCTCAGGCAGTATCTC
CTGTGGACGTTCACCCTGAAACAAGCTGTTGGATGAAGATACTCAAAGGA
GACCTTAGGGCCACAAGGTACACGGTCGGGGCAGACAACGATGGCGGACA
CAAAGTGTGCGACGGTTCCTCCGTCGTTGAGTTCATCAAACGTCATGATA
TTGGTATCGACATCGACGGAGAGGAAGGAAACCGTCACCCTCTGGGCGAA
GATTCAAGTTCCACTTACACTACAGGTGGGGTGACTTATATCGAAGACTT
CGTGGGAGTTCACAACATGGCGAACCCCAGTCCGACCGAAGAAAGCGTTT
CCCTTCACCTCTATACTCCGGGGATCACTAAGTGCAGCACCTGAATACTC
AAAGGAGACCTTAGGGCCACAAGGTACACGGTCGGGGCAGACAACGATGG
CGGACACAAAGTGTGCGACGGTTCCTCCGTCGTTGAGTTCATCAAACGTC
ATGATATTGGTATCGACATCGACGGAGAGGAAGGAAACCGTCACCCTCTG
GGCGAAGATTCAAGTTCCACTTACACTACAGGTGGGGTGACTTATATCGA
AGACTTCGTGGGAGTTCACAACATGGCGAACCCCAGTCCGACCGAAGAAA
GCGTTTCCCTTCACCTCTATACTCCGGGGATCACTAAGTGCAGCACCTGA
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