mRNA_H-elongata_contig8694.16243.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8694.16243.1
Unique NamemRNA_H-elongata_contig8694.16243.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8694.16243.1 vs. uniprot
Match: D7G8F2_ECTSI (Decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F2_ECTSI)

HSP 1 Score: 404 bits (1037), Expect = 2.170e-133
Identity = 233/394 (59.14%), Postives = 273/394 (69.29%), Query Frame = 1
Query:    1 VAAVLVVSPTYEGACFDVESIAKICHAAGVPLIVDEAHGAHLAFL-------------------------EQEKGRGKF-PRAALHCGADLVVQSAHKTLGSLTQSALLHLGKGALPQEG-------------------VISAALAMVQSSSPSYLLLASLDAARWSLAGGAKDGKRLLEEAVRIVRGVREELSSMEGIDVIELEGEEGREAGFVGMDPLRLTVSFNGSLGAYEADDLLEEEFGVYSELPTANYITFVFGPGSTFEHGRTLTEALRQANRKAISRRGTLSPNDGPSD-ARASSARSTA---PARQLCTPREAFFRPSRFVAAVDAVGLASAETVCPYPPGIPALLPGEEITQEALDLLATVKDAGSFISGCTDPSFATIRVVRD 1035
            VAAV +VSPTYEGAC DV S A+ CH AGVPL+VDEAHGAHLAFL                         ++ +  G F PRAAL CGADLVVQSAHKTLGSLTQSA LHLG G +   G                    +S ALA VQSSSPSYLLLASLDAARW LAG  K+ KR L EA RI  GVREELSS+EGI+V++L GE+G  AG VG DPLRLTVS  G +G YEAD++L E+FGVY+ELP  +Y+TFVFGPGST EHG+ L EALR    +A SR+G+ S +   +  A+A  A +T    P++ +CTPREAFF PS+ V+AVDA+G ASAETVCPYPPGIPALLPGE ITQ ALD LA VK++G  ISGC+D + AT+RVV D
Sbjct:  253 VAAVFMVSPTYEGACSDVNSAAEACHGAGVPLVVDEAHGAHLAFLGEAQPPSXXXXXXXXXXXXXXXXXRDEHRNNGSFYPRAALRCGADLVVQSAHKTLGSLTQSAFLHLGPGGVFASGGTEGXXXXXXXXDDFSIERAVSDALATVQSSSPSYLLLASLDAARWDLAGTDKNAKRRLREAARIADGVREELSSVEGINVLDLGGEKGSAAGCVGTDPLRLTVSLEGGVGGYEADEILIEDFGVYAELPGPDYVTFVFGPGSTVEHGQRLAEALRHVALEATSRQGSGSGSVAAAGTAQAVEATNTPVPPPSKLMCTPREAFFAPSKTVSAVDAIGQASAETVCPYPPGIPALLPGEVITQAALDALAAVKESGGVISGCSDATLATMRVVAD 646          
BLAST of mRNA_H-elongata_contig8694.16243.1 vs. uniprot
Match: A0A6H5K8P0_9PHAE (ADC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P0_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 4.380e-81
Identity = 169/360 (46.94%), Postives = 197/360 (54.72%), Query Frame = 1
Query:    1 VAAVLVVSPTYEGACFDVESIAKICHAAGVPLIVDEAHGAHLAFLEQEKGRGKFPRAALHCGADLVVQSAHKTLGSLTQSALLHLGKGALPQ-------------EGVISAALAMVQSSSPSYLLLASLDAARWSLAGGAKDGKRLLEEAVRIVRGVREELSSMEGIDVIELEGEEGREAGFVGMDPLRLTVSFNGSLGAYEADDLLEEEFGVYSELPTANYITFVFGPGSTFEHGRTLTEALRQANRKAISRRGTLSPNDGPSDARASSARSTAPARQLC--TPREAFFRPSRFVAAVDAVGLASAETVCPYPPGIPALLPGEEITQEALDLLATVKDAGSFISGCTDPSFATIRVVRD 1035
            VAAV +VSPTYEGAC DV S A+ CH AGVPL+VDEAHGAHLAFL    G  + P +                                                E  ++ ALA VQSSSPSYLLLASLDAARW LAG  K+ KR L EA  I  GVREELSS+EGI+V++L GE G  AG VG DPLRLTVSF G +G YEAD++L E+FGVY+ELP  +Y+TFVFGPGST EHG+ L EALR                               PA++ C  TP+                             GIPALLPGE ITQ ALD LA VK++G  ISGC+D + AT+RVV D
Sbjct:  157 VAAVFMVSPTYEGACSDVTSAAEACHGAGVPLVVDEAHGAHLAFL----GEAQPPPSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDFSIERAVTDALATVQSSSPSYLLLASLDAARWDLAGATKNAKRRLREAALIADGVREELSSVEGINVLDLGGESGSAAGCVGTDPLRLTVSFEGGVGGYEADEILIEDFGVYAELPGPDYVTFVFGPGSTVEHGQRLAEALRHV---------------------------ALPAQKRCAHTPQV----------------------------GIPALLPGEAITQAALDALAAVKESGGVISGCSDATLATMRVVVD 457          
BLAST of mRNA_H-elongata_contig8694.16243.1 vs. uniprot
Match: A0A7S4BJJ9_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BJJ9_CHRCT)

HSP 1 Score: 260 bits (664), Expect = 1.900e-78
Identity = 182/374 (48.66%), Postives = 218/374 (58.29%), Query Frame = 1
Query:    4 AAVLVVSPTYEGACFDVESIAKICHAAGVPLIVDEAHGAHLAFLEQEKGRGKFPRAALHCGADLVVQSAHKTLGSLTQSALLHLGKGAL---PQEG-VISAALAMVQSSSPSYLLLASLDAARWSLAGGAKDGKRLLEEAVRIVRGVREELSS--MEGIDVIELEGEEGREAGFVGMDPLRLTVSFNGS------LGAYEADDLLEEEFGVYSELPTANYITFVFGPGSTFEHGRTLTEALRQ-----------------ANRKAISRRGTLSPNDGPSDARASSARSTAP---ARQLCTPREAFFRPSRFVAAVDAVGLASAETVCPYPPGIPALLPGEEITQEALDLLATVKDAGSFISGCTDPSFATIRVV 1029
            AAV++VSPTY G   DV +IA+ C  AGVPLIVDEAHGAHL FLE  +      R AL  GAD+VV S HKTLGSLTQSA+LH  + AL   PQ G  +S AL +VQSSSPSYLLLASLDAARW +A     G+R L  A R+   VR EL +  + G+  +EL   EG  A    +DP+RLTV   G       L  +E D+ L E  GVY+ELP  + ITF F  GS   H R L  ALR+                 A   A  R   L+    P  A ASS+ S A     ++ CTPREAFFR  + V+A  AVG  SAE VCPYPPGIP L+PGE I  +AL  L  ++DAG  ISG +D    TI V+
Sbjct:  213 AAVMLVSPTYHGVISDVAAIARSCRDAGVPLIVDEAHGAHLHFLEPSEPPFN-GRPALSQGADIVVHSIHKTLGSLTQSAILHASETALTRTPQLGSALSEALGLVQSSSPSYLLLASLDAARWQMAAPEARGRRWLAHASRLASSVRNELRTRPVGGMYPLELVKREGVAA----VDPVRLTVMVRGGSAKETLLDGFEVDEALIER-GVYAELPELDSITFAFSAGSRRRHSRRLVNALREIGGDACMPSEAGDRRRTAAAAAALRLAALTEEPDPDQAPASSSLSGADLESGKRACTPREAFFRARKSVSAEAAVGEISAELVCPYPPGIPLLVPGERIGADALAELLALRDAGCTISGASDADLDTIWVL 580          
BLAST of mRNA_H-elongata_contig8694.16243.1 vs. uniprot
Match: K9SZC0_9CYAN (Arginine/lysine/ornithine decarboxylase n=3 Tax=Pleurocapsales TaxID=52604 RepID=K9SZC0_9CYAN)

HSP 1 Score: 246 bits (629), Expect = 3.630e-74
Identity = 149/347 (42.94%), Postives = 205/347 (59.08%), Query Frame = 1
Query:    7 AVLVVSPTYEGACFDVESIAKICHAAGVPLIVDEAHGAHLAFLEQEKGRGKFPRAALHCGADLVVQSAHKTLGSLTQSALLHLGKGALPQEGVISAALAMVQSSSPSYLLLASLDAARWSLAGGAKDGKRLLEEAVRIVRGVREELSSMEGIDVIELEGEEGREAGFVGMDPLRLTVSFNG-SLGAYEADDLLEEEFGVYSELPTANYITFVFGPGSTFEHGRTLTEALRQANRKAISR-----RGTLSPNDGPSDARASSARSTAPARQLCTPREAFFRPSRFVAAVDAVGLASAETVCPYPPGIPALLPGEEITQEALDLLATVKDAGSFISGCTDPSFATIRVV 1029
            AV++VSPTY+G C D+ +IA+  H  G+PL+VDEAHGAH AF          P AAL  GADL VQS HKTL ++TQ+++LHL KG+    G +S AL ++QSSSPS LLLASLDAAR  +A     GK LLE  +R+    R  +  + G+ V  L+ +  +  GF  +DP RLTV+ +   +  + AD++  E+ GV +ELPT  ++TF+   G+T E    L +A +  + K  S       G   P   PS            +  + +PR AFF P+  +    A+G  SAET+CPYPPGIP LLPGE IT++A+  L  +  AG F+SGC D S  T+RV+
Sbjct:  169 AVMIVSPTYQGICGDIAAIARQVHNYGIPLLVDEAHGAHFAF------HPALPTAALAAGADLAVQSTHKTLSAMTQASMLHL-KGSRIDPGRVSQALQLLQSSSPSNLLLASLDAARQQMA---TQGKALLERTIRLADEARSRIGQIPGLSV--LQPKPTKTPGFYALDPTRLTVTVSALGIDGFAADEIFYEQLGVTAELPTLQHLTFIITLGNTAEDSDRLVDAFKHLSDKYRSEGTGKIEGQSLPKFPPSPN----------SMPVLSPRAAFFSPTETIPISQAIGRISAETICPYPPGIPILLPGEAITEDAIASLQRIVGAGGFVSGCADASLQTLRVI 493          
BLAST of mRNA_H-elongata_contig8694.16243.1 vs. uniprot
Match: UPI0019DA5B1C (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Leptolyngbyaceae cyanobacterium JSC-12 TaxID=864702 RepID=UPI0019DA5B1C)

HSP 1 Score: 240 bits (613), Expect = 1.060e-71
Identity = 151/346 (43.64%), Postives = 204/346 (58.96%), Query Frame = 1
Query:    7 AVLVVSPTYEGACFDVESIAKICHAAGVPLIVDEAHGAHLAFLEQEKGRGKFPRAALHCGADLVVQSAHKTLGSLTQSALLHLGKGALPQEGVISAALAMVQSSSPSYLLLASLDAARWSLAGGAKDGKRLLEEAVRIVRGVREELSSMEGIDVIELEGEEGREAGFVGMDPLRLTVSFNG-SLGAYEADDLLEEEFGVYSELPTANYITFVFGPGSTFEHGRTLTEALRQANRKAISRRGTLSPNDGPSD----ARASSARSTAPARQLCTPREAFFRPSRFVAAVDAVGLASAETVCPYPPGIPALLPGEEITQEALDLLATVKDAGSFISGCTDPSFATIRVV 1029
            AVL+VSPTY G   DV +IA+I H   +PL+VDEAHGAH  F          PR+AL  GADL VQS HKTL +LTQ+A+LH+ +G       ++ ALA++QS+SP+YLLLASLDA R  LA     GK L+  ++R+    R  ++ +  + +  L+ E+    GF  +DP RLTV+ +G  +  + AD+LL E+ G+ +ELPT  ++TF+   G+  E    L   L     +     G    +    D    A ASS  S +P+    +PREAF   +  V+   AVG  SAE VCPYPPGIP L+PGE IT+EA+  L  V DAG  ISGC DPS  TI+V+
Sbjct:  169 AVLIVSPTYYGVSADVAAIAQIIHQHSIPLLVDEAHGAHFGF------HPNLPRSALQAGADLAVQSTHKTLSALTQAAMLHV-QGQRINRDRLTKALALIQSTSPNYLLLASLDATRHQLA---TQGKELMAHSLRLATKARSRIAQIPELSL--LDAEQAGSPGFFRLDPTRLTVTVSGLGITGFTADELLNEQLGIVAELPTLQHLTFIISLGNREEDIERLVHGLEWLEGRKPEAGGKREDDGVGGDKAVFAWASSLHSASPSP--LSPREAFLVQAEVVSVEAAVGCVSAELVCPYPPGIPVLIPGEVITEEAIASLKQVLDAGGIISGCADPSLTTIKVI 500          
BLAST of mRNA_H-elongata_contig8694.16243.1 vs. uniprot
Match: A0A835Z373_9STRA (Decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z373_9STRA)

HSP 1 Score: 241 bits (616), Expect = 2.260e-71
Identity = 164/376 (43.62%), Postives = 196/376 (52.13%), Query Frame = 1
Query:    1 VAAVLVVSPTYEGACFDVESIAKICHAAGVPLIVDEAHGAHLAFLEQEKGRGKF-----------PRAALHCGADLVVQSAHKTLGSLTQSALLHLGKGAL--------------PQEGVISAALAMVQSSSPSYLLLASLDAARWSLAGGAKDGKRLLEEAVRIVRGVREELSSMEGIDVIELEGEEGREAGFVGMDPLRLTVSFNGSLGAYEADDLLEEEFGVYSELPTANYITFVFGPGSTFEHGRTLTEALRQANRKAISRRGTLSPNDGPSDAR--------ASSARSTAPARQLCTPREAFFRPSRFVAAVDAVGLASAETVCPYPPGIPALLPGEEITQEALDLLATVKDAGSFISGCTDPSFATIRVV 1029
            VAAVLVVSPTY GA  DV ++A  C A GVPL+VDEAHG HL F+  +                 P  AL CGAD VVQS+HKTL SLTQSALLH+ +G L                E  ISAAL M QSSSP+YLLLASLDAARW+LA   + G   L  A R     R  + ++ G+ V+       R AG   MDPL++TV F G+ G Y+ADDLL    GVY+E+P    +TF                                                  A +A   A  RQL +PREA F  +  VAA  AVG ASAETVC YPPGIP LLPGE +T E L  L  V+ AG  ++GC D +  T+RVV
Sbjct:  209 VAAVLVVSPTYTGAATDVRALAVACRARGVPLLVDEAHGGHLQFMSDDGXXXXXXXXXXXXXXDAPCGALRCGADAVVQSSHKTLASLTQSALLHVRRGGLLDGGXXXXXXXXXPSAEAAISAALEMFQSSSPNYLLLASLDAARWALASERRPGVARLRAAARAAESARARIEALPGLTVLR-----SRHAGGAPMDPLKVTVYFGGASG-YDADDLLIGGHGVYAEMPATKTVTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAASVPAAPRQLLSPREAHFARAETVAADAAVGRASAETVCAYPPGIPVLLPGEAVTAECLAFLRRVRRAGGDVTGCADATLETLRVV 578          
BLAST of mRNA_H-elongata_contig8694.16243.1 vs. uniprot
Match: A0A4D9D2J8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2J8_9STRA)

HSP 1 Score: 242 bits (617), Expect = 3.500e-71
Identity = 159/373 (42.63%), Postives = 204/373 (54.69%), Query Frame = 1
Query:    1 VAAVLVVSPTYEGACFDVESIAKICHAAGVPLIVDEAHGAHLAFLEQEKGR--------GKFPRAALHCGADLVVQSAHKTLGSLTQSALLHLGKGALPQEGV---ISAALAMVQSSSPSYLLLASLDAARWSLAGGAKDGKRLLEEAVRIVRGVREELSSMEGIDVIELEGEEGREAGFVGMDPLRLTVSFNGS-LGAYEADDLLEEEFGVYSELPTANYITFVFGPGSTFEHGRTLTEALR----------------QANRKAISRRGTLSPNDGPSDARASSARSTAPARQLCTPREAFFRPSRFVAAVD--AVGLASAETVCPYPPGIPALLPGEEITQEALDLLATVKDAGSFISGCTDPSFATIRVV 1029
            VAAVL+VSPTY GA  D+E  A +C    VPLIVDEAHGAHLAFLE E            +    AL  GADLVVQS HKTL +++Q A++H GKG L    +   + +AL +VQSSSP+Y+LLASLD ARW L      G+  L  A ++    +  L       +++   +  +   FVG+DPLRLTV   G+ +  ++AD++L EE GVY+ELP +  +TF  GPGS  E    L  A +                 A  +A S      P DG         +  A     C PR+A+F  S  ++  D   VG ASAETVCPYPPGIP LLPGE IT E L  L  V   G  ++GC+DPS   IRV+
Sbjct:  247 VAAVLLVSPTYHGAVMDIEQAALLCAKFKVPLIVDEAHGAHLAFLEVEINEPGNAGPLASRAMTGALAQGADLVVQSTHKTLTAVSQCAMMHAGKGPLVDSAMLEFVGSALQLVQSSSPNYVLLASLDGARWQLGSPLGGGRTALHRAQKLAAKAKRLLLEETPFPILK-PPDRPKGGAFVGLDPLRLTVGTMGTGMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGSEEEDVDCLVAAFKALATLVDKGKRDRSRDMAGEEASSFMADFPPFDG---------KQAAAGSLKCGPRDAYFTASEVLSTNDERVVGRASAETVCPYPPGIPVLLPGEIITVEVLRFLKGVLSTGGSVTGCSDPSLGKIRVL 609          
BLAST of mRNA_H-elongata_contig8694.16243.1 vs. uniprot
Match: A0A8J7BKX1_9CYAN (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Trichocoleus sp. FACHB-262 TaxID=2692869 RepID=A0A8J7BKX1_9CYAN)

HSP 1 Score: 237 bits (605), Expect = 2.280e-70
Identity = 149/344 (43.31%), Postives = 212/344 (61.63%), Query Frame = 1
Query:    7 AVLVVSPTYEGACFDVESIAKICHAAGVPLIVDEAHGAHLAFLEQEKGRGKFPRAALHCGADLVVQSAHKTLGSLTQSALLHLGKGALPQEGVISAALAMVQSSSPSYLLLASLDAARWSLAGGAKDGKRLLEEAVRIVRGVREELSSMEGIDVIELEGEEGREAGFVGMDPLRLTVSFNG-SLGAYEADDLLEEEFGVYSELPTANYITFVFGPGSTFEHGRTLTEALRQANRKAISRRGTLSPNDGPSDARASSARSTAPARQLCTPREAFFRPSRFVAAVDAVGLASAETVCPYPPGIPALLPGEEITQEALDLLATVKDAGSFISGCTDPSFATIRVVRD 1035
            AVL+V PTY G C DV++IA++ HA G+PL+VDEAHG H AF        + P AAL  GADL VQS HK L ++TQ+A+LH+ +G       ++ AL +VQS+SPSYLLL SLDAAR  +A     G+ L+ + +++    R ++S + G+ V  L+ E+    GF  +D  RLTV+ +   L  +EAD++L EEFGV +ELP+  ++TF+   G+T    + L  AL     K+++     SP   PS+   ++ R   P   + +PR+A+F P+  VA   AV   SAE VCPYPPGIP L+PGE I  EA++ L  V  AG FI+GC D S  T++VV++
Sbjct:  185 AVLMVYPTYYGVCGDVQAIAQLAHAQGIPLLVDEAHGPHFAF------HPELPTAALTAGADLAVQSIHKVLSAMTQAAMLHV-QGERVDRDRLTKALQLVQSTSPSYLLLTSLDAARQQMA---TQGQALMTQTLQLADLARTQISQIPGLQV--LQPEQAGSPGFATLDRTRLTVTVSDLGLTGFEADEILNEEFGVTAELPSLQHLTFIISLGNTEADIQQLVMAL-----KSLTEGHHGSP---PSNLVGANGRLPLP-NVVLSPRDAWFAPTETVAIAQAVNRVSAELVCPYPPGIPVLVPGEAIAPEAINYLQQVLAAGGFITGCADASLQTLKVVQE 507          
BLAST of mRNA_H-elongata_contig8694.16243.1 vs. uniprot
Match: A0A6H1U361_9CYAN (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6H1U361_9CYAN)

HSP 1 Score: 236 bits (603), Expect = 2.460e-70
Identity = 148/345 (42.90%), Postives = 206/345 (59.71%), Query Frame = 1
Query:    7 AVLVVSPTYEGACFDVESIAKICHAAGVPLIVDEAHGAHLAFLEQEKGRGKFPRAALHCGADLVVQSAHKTLGSLTQSALLHLGKGALPQEGVISAALAMVQSSSPSYLLLASLDAARWSLAGGAKDGKRLLEEAVRIVRGVREELSSMEGIDVIELEGEEGREAGFVGMDPLRLTVSFNG-SLGAYEADDLLEEEFGVYSELPTANYITFVFGPGSTFEHGRTLTEALRQANRKAISRRGTLSPNDGPSDARASSARSTAPARQLC-TPREAFFRPSRFVAAVDAVGLASAETVCPYPPGIPALLPGEEITQEALDLLATVKDAGSFISGCTDPSFATIRVVRD 1035
            AV+VV PTY+G C D+E+IA++C    V L+ DEAHG H  F          P AAL  GAD+ VQS HK LG+LTQ++++H+ KG       +SA+L ++ SSSPSYLLLASLDAAR  +A    DG+ L+EE +R+ R  + +++++ G+ V  L+G     +GF   D  R+ V+ +   L  YEAD+LL+E+FGV  ELP    +TF+   G+T      L   L    R+   R G    +  P       A      + LC +PR+AFF P   + A+DAV   SAE VCPYPPGIP L+PGE I   A+D L  VK  G+ ++GC+DPSF T++VV++
Sbjct:  167 AVMVVYPTYQGVCSDIEAIARVCRDRDVLLLADEAHGPHFTFHRD------LPMAALAAGADVSVQSIHKVLGALTQASMVHV-KGDRLDPDRLSASLQLLTSSSPSYLLLASLDAARRQMA---LDGEALMEETLRLGRSAQAQIAAIPGLRV--LDGPSAPTSGFTARDRTRIVVNVSELGLSGYEADELLDEKFGVVCELPLPKTVTFIVSLGNTQTDIDRLVAGLEGLARQ-FRREGACGGDRPPL------AFPELSPKPLCLSPRDAFFAPVETIRAIDAVNRISAELVCPYPPGIPILMPGEAICAAAIDYLHAVKTRGALLTGCSDPSFQTVQVVQE 492          
BLAST of mRNA_H-elongata_contig8694.16243.1 vs. uniprot
Match: A0A2N6K627_FISMU (Arginine decarboxylase n=2 Tax=Hapalosiphonaceae TaxID=1892263 RepID=A0A2N6K627_FISMU)

HSP 1 Score: 235 bits (600), Expect = 8.750e-70
Identity = 146/352 (41.48%), Postives = 209/352 (59.38%), Query Frame = 1
Query:    7 AVLVVSPTYEGACFDVESIAKICHAAGVPLIVDEAHGAHLAFLEQEKGRGKFPRAALHCGADLVVQSAHKTLGSLTQSALLHLGKGALPQEGVISAALAMVQSSSPSYLLLASLDAARWSLAGGAKDGKRLLEEAVRIVRGVREELSSMEGIDVIE--LEGEEGREAGFVGMDPLRLTVSFNG-SLGAYEADDLLEEEFGVYSELPTANYITFVFGPGSTFEHGRTLTEALRQANRKAISRRGTLSPN-------DGPSDARASSARSTAPARQLCTPREAFFRPSRFVAAVDAVGLASAETVCPYPPGIPALLPGEEITQEALDLLATVKDAGSFISGCTDPSFATIRVVR 1032
            AV++V PTY G C DV++IA+I H   +PLIVDEAHGAH AF  Q       P  AL  GADL VQS HKTLG++TQ+++LH+ +G       ++ AL +VQS+SPSYLLLASLDAAR  +A     GK+L+   +++ +  R  ++ + G+ +++  L+GE G   GF+ +D  RLTV+ +G  +  + A+++L+++FGV +E  T  ++TF+   G+T E    L +AL +      S    LS         D   +  AS            +PREAFF  +  +     +G   AETVCPYPPGIP L+PGE IT+ AL+ L  ++  G FISGC D S +TI VV+
Sbjct:  167 AVIMVYPTYYGVCGDVQAIAQITHQYNIPLIVDEAHGAHFAFHPQ------LPTPALQAGADLSVQSIHKTLGAMTQASMLHI-QGKRINRDRLNKALQLVQSTSPSYLLLASLDAARQQMA---LYGKQLMSRTLQLAKEARTRITQISGLSILQSPLQGELGGSPGFISLDQARLTVTVSGLGITGFTAEEILDQQFGVTAEFATLQHLTFIISLGNTQEDIEHLVQALTKLTEMITSSPSLLSYKAEGQEIWDDVFNVGAS---------VHISPREAFFAATETLPISKTIGRICAETVCPYPPGIPVLMPGEMITKPALEYLQKIQAMGGFISGCADTSLSTITVVK 499          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8694.16243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8F2_ECTSI2.170e-13359.14Decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5K8P0_9PHAE4.380e-8146.94ADC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S4BJJ9_CHRCT1.900e-7848.66Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
K9SZC0_9CYAN3.630e-7442.94Arginine/lysine/ornithine decarboxylase n=3 Tax=Pl... [more]
UPI0019DA5B1C1.060e-7143.64Aminotransferase class I/II-fold pyridoxal phospha... [more]
A0A835Z373_9STRA2.260e-7143.62Decarboxylase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A4D9D2J8_9STRA3.500e-7142.63Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A8J7BKX1_9CYAN2.280e-7043.31Aminotransferase class I/II-fold pyridoxal phospha... [more]
A0A6H1U361_9CYAN2.460e-7042.90Aminotransferase class I/II-fold pyridoxal phospha... [more]
A0A2N6K627_FISMU8.750e-7041.48Arginine decarboxylase n=2 Tax=Hapalosiphonaceae T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8694contigH-elongata_contig8694:4103..7957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score407.9
Seed ortholog evalue4.7e-111
Seed eggNOG ortholog2880.D7G8F2
EggNOG free text desc.arginine decarboxylase activity
EggNOG OGs2QWPE@2759,COG1982@1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiondecarboxylase
Ec32 orthologEc-14_002820.1
Exons9
Model size1055
Cds size1053
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931269.6808777-CDS-H-elongata_contig8694:4102..42711622931269.6808777-CDS-H-elongata_contig8694:4102..4271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 4103..4271 +
1691679767.2974544-CDS-H-elongata_contig8694:4102..42711691679767.2974544-CDS-H-elongata_contig8694:4102..4271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 4103..4271 +
1622931269.6933212-CDS-H-elongata_contig8694:5021..51141622931269.6933212-CDS-H-elongata_contig8694:5021..5114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 5022..5114 +
1691679767.3098376-CDS-H-elongata_contig8694:5021..51141691679767.3098376-CDS-H-elongata_contig8694:5021..5114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 5022..5114 +
1622931269.7088532-CDS-H-elongata_contig8694:5504..55701622931269.7088532-CDS-H-elongata_contig8694:5504..5570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 5505..5570 +
1691679767.3198483-CDS-H-elongata_contig8694:5504..55701691679767.3198483-CDS-H-elongata_contig8694:5504..5570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 5505..5570 +
1622931269.722362-CDS-H-elongata_contig8694:6078..62071622931269.722362-CDS-H-elongata_contig8694:6078..6207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 6079..6207 +
1691679767.3297813-CDS-H-elongata_contig8694:6078..62071691679767.3297813-CDS-H-elongata_contig8694:6078..6207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 6079..6207 +
1622931269.7649038-CDS-H-elongata_contig8694:6364..64961622931269.7649038-CDS-H-elongata_contig8694:6364..6496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 6365..6496 +
1691679767.3408184-CDS-H-elongata_contig8694:6364..64961691679767.3408184-CDS-H-elongata_contig8694:6364..6496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 6365..6496 +
1622931269.781985-CDS-H-elongata_contig8694:6687..68021622931269.781985-CDS-H-elongata_contig8694:6687..6802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 6688..6802 +
1691679767.3518229-CDS-H-elongata_contig8694:6687..68021691679767.3518229-CDS-H-elongata_contig8694:6687..6802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 6688..6802 +
1622931269.7986343-CDS-H-elongata_contig8694:7039..71471622931269.7986343-CDS-H-elongata_contig8694:7039..7147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 7040..7147 +
1691679767.360517-CDS-H-elongata_contig8694:7039..71471691679767.360517-CDS-H-elongata_contig8694:7039..7147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 7040..7147 +
1622931269.8125017-CDS-H-elongata_contig8694:7398..74871622931269.8125017-CDS-H-elongata_contig8694:7398..7487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 7399..7487 +
1691679767.3736267-CDS-H-elongata_contig8694:7398..74871691679767.3736267-CDS-H-elongata_contig8694:7398..7487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 7399..7487 +
1622931269.8276951-CDS-H-elongata_contig8694:7805..79571622931269.8276951-CDS-H-elongata_contig8694:7805..7957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 7806..7957 +
1691679767.3826156-CDS-H-elongata_contig8694:7805..79571691679767.3826156-CDS-H-elongata_contig8694:7805..7957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8694 7806..7957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8694.16243.1prot_H-elongata_contig8694.16243.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8694 4103..7957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8694.16243.1

>prot_H-elongata_contig8694.16243.1 ID=prot_H-elongata_contig8694.16243.1|Name=mRNA_H-elongata_contig8694.16243.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=351bp
VAAVLVVSPTYEGACFDVESIAKICHAAGVPLIVDEAHGAHLAFLEQEKG
RGKFPRAALHCGADLVVQSAHKTLGSLTQSALLHLGKGALPQEGVISAAL
AMVQSSSPSYLLLASLDAARWSLAGGAKDGKRLLEEAVRIVRGVREELSS
MEGIDVIELEGEEGREAGFVGMDPLRLTVSFNGSLGAYEADDLLEEEFGV
YSELPTANYITFVFGPGSTFEHGRTLTEALRQANRKAISRRGTLSPNDGP
SDARASSARSTAPARQLCTPREAFFRPSRFVAAVDAVGLASAETVCPYPP
GIPALLPGEEITQEALDLLATVKDAGSFISGCTDPSFATIRVVRDTPEFD
*
back to top

mRNA from alignment at H-elongata_contig8694:4103..7957+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8694.16243.1 ID=mRNA_H-elongata_contig8694.16243.1|Name=mRNA_H-elongata_contig8694.16243.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3855bp|location=Sequence derived from alignment at H-elongata_contig8694:4103..7957+ (Himanthalia elongata Himel1 dioecious)
GTTGCTGCGGTGTTGGTCGTATCGCCGACGTATGAGGGTGCCTGCTTCGA CGTGGAGTCGATCGCGAAGATCTGCCACGCGGCCGGCGTTCCTCTCATAG TAGACGAGGCCCACGGTGCGCATCTCGCCTTTCTGGAGCAGGAGAAAGGG CGGGGCAAGTTTCCGAGGGGTGAGGGAGGCCTCTAAATGCTATCGTGGTG TTACTTTTGACGATCATTAGGGGATCGCTGCTGTTGATAATCAGAAGCGT TTTTGCCAGTCTTTTGTATTTCGAGTGGTGGGTGCTGGCTCGGGGGCCGA GTCGATCGACCGATCGCCTCGCCCGTTCTCGATGACGTAGCAGGAGAAAA ACATTAAAACCGTTCCTTTTCGAAGCGGCAGGTGTACTTTGTGGCCGGTT GTAATCATGCGCACCGGGAGAGTCAACCGATTTGTAGCCCGATCAGGGTA TTGCTCTTCTATCAACAGTAGCATGGCGTATTGTGCTTATTATTTGAAGT CCGTAATTGAAACGCTCTGGGGTTCCGTCTGCAGGAGTATCAGTAGGCGT TTTGATTTTTACACCTCTAGAGGACCGACGTCGACACTCGCCGCAGCTCC AATCTGTAACCCCCCCCCTCCTCTCTCTCTCTGAAACATATCCTCGTCAC ACTTACCTGACCAACAAATAGCAACGGGAGCGGCAGCCCACCCCACCACA GAGATTTATCCGGCTAATACGCGTTTTTTCTTCTTCTGTATAGCACGCCT TTCGAGAACGCTACACTTTTCGACTCTGTTTATGGTATGCTCTCGTCATC GATCTCGATCCTGATTCCAATTCCGATCGATATTTCCTCCTTCGCCGGCG GCGGCGTCCCGTTCGACCGTCACCACCGCAACCGCGCTCGACCGGCTCGG GCCGCCACCAACACAATAGCGGCGCTGCACTGCGGCGCGGACCTTGTGGT GCAGAGCGCTCACAAGACTCTGGGCTCCTTGACGCAGTCGGCGTTGCTTC ACCTCGGAAAAGGCGAGCTTGTGTTAACGAAGGCGTGTATAGAGGCCGAT TGCACCCCACCTTTGATACATGCTTCGGAACAACACAAAGTTATTTTTTC CCTGTTCAGCTGACTACAAGAAGCAGGAAGAAAACATATCTGGTTGATCC ATACTCTGCTGCATGTGATGACGTCATGACCATACAGGATGCAAGCCCCG GGGCTAGTGCCTCGAAGAATATTTCAAGAGCGTATTTTACTGCTGCCGCC GAGGAACTCTCTCGAGTATATTCTTCGGAGTTTGACGTAGCTGCAGTGAT TTCAGGCCATCTTTAGGACTTGAATGTTGCCACCAGTTATGCTTTTTTTT ACTGTTTTTGCACGTCATCCCTTTGCACTGCCCTTCATGTTACCGCTGCC AGGAGCACTGCCCCAGGAGGGAGTCATATCGGCCGCACTCGCGATGGTCC AGAGCTCGAGCCCAAGCTGTGAGTATAGCTTTTCGCCATGACCACCGCTA TCCTTGAAATGCTCCCCCTCTTTTCTTTGCCGCAAAATTCGTCGCCACAG CCCTTGGGATAGCTGGCGCGGAATATGTGTGTATCTCCTTCTGAAACCGT ACTCTGATTCTTCCTGTATGACGGTTTGCTAGCGTCGTGCCATGGTTTTA CCGCAAGCGCTTGCCGGGGCCGTTCACATTCTTGTGGACACGTCCTATAG TAGGCACGCCAGGAGCAGAACATGTCTTGGATGAGTGGTCGAAATACGTG AGGAGATCGGCGATTTCGCATTCGAAGACTGGACGCCGCGTGTCGCTGCT GCTCTTGCTGCTGCGGTAGGGCGTCGTTAGAGCACCCGAAGAAGGGACGT CTTGTATCGAATTGCGGCATGATGTCGCGTGTTGAAAGGCCGTCGCTGAC TTACGCCGCGCGCTTCTCGCCTCGTTTTGCGCGCCACAATCCATCTATGA TCTACGTATGCGTGTTTTATGGATAGACCTGCTACTAGCGTCACTGGACG CGGCGCGTTGGAGCCTCGCCGGTGGAGCGAAGGATGGCAAGCGTCTCCTC GAAGAGGCGGTGCGCATCGTGCGAGGGGTGCGAGAGGAGCTGTCGAGCAT GGAAGGTGCGATGACGCCGCTTTTTCCAAGGCAGCATGCCGCAAGCACAG CGCGCACCAAGGATCTTTTTGGCATGACAGCGCTTTGTTATAACACTAAA TAGTTTTTTTCGCGTTTGCCAAACCCGTTGGAAACCCCACTCCATCAATT CTCTCGGAAAAGGTATCGATGTCATCGAGCTGGAAGGGGAGGAAGGGCGG GAGGCGGGGTTCGTCGGGATGGACCCTCTGCGTCTTACGGTGTCTTTCAA CGGGAGCCTCGGAGCATACGAAGCCGACGACCTGCTTGAGGAAGGTAAGC GCGACGGAACGGCGAGAGGGCGCTACCGCGCGGTATTTTCAATCACGAGC CATTGTTTGGTGTGCGACGCCTTCTAGTCGTGTTGTTTATTCTGCCGACT TGGGGCGGGAAGAGATCGACATGCGCCTCACCATTATGATCGAAATAATT GCGCCCCCGTCGCCACAACCGCGCGATTGCCACAGAATTTGGCGTGTACT CGGAGCTCCCGACCGCCAATTACATCACTTTCGTCTTCGGTCCGGGCTCT ACCTTCGAGCACGGACGTACTCTGACGGAGGCGTTACGACAGGCCAATCG GTGAGAATTGATGCGTTTACGCACGTGAGGTATGATGCTCCCCGCTTCGT TTCCAGAAGGGGTCCCCATCTTTTAAGGCGCTCCCGTTGACGGTTTCAGA TTTTTCACGTTGCGCCTTCTCAAAGGCGATGGACAGGTGCTATCCGGTTT TTCTTTAGTGGCGTGGTTAATTTTTCTCCTATTCCGATTTCCACCCGTTC ACCTCCGACTTTCCCGCCTGCGTCACGACGCTCTTAGTAAAGCGATATCT CGGCGAGGGACACTATCGCCCAACGATGGGCCGTCGGACGCGAGAGCTTC TTCGGCGCGTTCGACTGCCCCTGCCCGCCAGCTTTGCACCCCTCGGTGAG TGGCGAAGCGGTCGCTACATGTTTGCGAAGGTACAATAAATTAAAGCTGT TTCGAATCTTCTATTCCGTTGGCGAGCCCCCCCCCTCCCTCTCGGTGTCC GCCCAATAACCCGCGTTTGAAAAAAAAAAGCACCTGTGCGATAAACGTTT TGGGTACTTATTTACCCACCCCCTCCCCCCCACCCTCACCCTCCCACCCC ACCTCCTGTTTTCATTATGCTGGCTTTCTGTCACACCCCTTTTCAGGGAA GCGTTCTTTCGCCCTTCCAGGTTCGTAGCTGCGGTTGACGCTGTTGGCCT CGCCAGCGCAGAGACGGTGTGCCCTTACCCTCCAGGTGAGAATCAGGTGC ATCAAGCATATGGCGTTGAATGTGGGAGACCTCGAAAGGAGCTGCGAGAG GCGATGATTTTCATCTTCCCACCCACTTGCGCATAGACGTGCTCCTCGTT CTTTTTAGTTAAGGCTAAGGCTTGCAACGCTCACACTTTGCGTGGTTCAT TTGCAACATCGACACTAGACGGAGATGTTCCCTCAGCGGGAACGACGTGT CTTTTTCTCTTTTTTCCCCCATAAGCTTGTGGTTTCTAGCCACTTATTTT CCCCCCCGAGTATATAATAATCTAACCTATACTGCTCGCGTAACCGTTTC TAGGCATCCCAGCGCTGTTGCCAGGCGAGGAGATTACTCAGGAGGCTTTG GACTTGCTGGCGACCGTTAAGGACGCGGGTAGCTTCATCTCTGGGTGCAC GGACCCCTCGTTCGCGACGATAAGAGTCGTGCGCGACACACCCGAGTTCG ACTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8694:4103..7957+

>mRNA_H-elongata_contig8694.16243.1 ID=mRNA_H-elongata_contig8694.16243.1|Name=mRNA_H-elongata_contig8694.16243.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2106bp|location=Sequence derived from alignment at H-elongata_contig8694:4103..7957+ (Himanthalia elongata Himel1 dioecious)
GTTGCTGCGGTGTTGGTCGTATCGCCGACGTATGAGGGTGCCTGCTTCGA
CGTGGAGTCGATCGCGAAGATCTGCCACGCGGCCGGCGTTCCTCTCATAG
TAGACGAGGCCCACGGTGCGCATCTCGCCTTTCTGGAGCAGGAGAAAGGG
CGGGGCAAGTTTCCGAGGGGTTGCTGCGGTGTTGGTCGTATCGCCGACGT
ATGAGGGTGCCTGCTTCGACGTGGAGTCGATCGCGAAGATCTGCCACGCG
GCCGGCGTTCCTCTCATAGTAGACGAGGCCCACGGTGCGCATCTCGCCTT
TCTGGAGCAGGAGAAAGGGCGGGGCAAGTTTCCGAGGGCGGCGCTGCACT
GCGGCGCGGACCTTGTGGTGCAGAGCGCTCACAAGACTCTGGGCTCCTTG
ACGCAGTCGGCGTTGCTTCACCTCGGAAAAGCGGCGCTGCACTGCGGCGC
GGACCTTGTGGTGCAGAGCGCTCACAAGACTCTGGGCTCCTTGACGCAGT
CGGCGTTGCTTCACCTCGGAAAAGGAGCACTGCCCCAGGAGGGAGTCATA
TCGGCCGCACTCGCGATGGTCCAGAGCTCGAGCCCAAGCTGAGCACTGCC
CCAGGAGGGAGTCATATCGGCCGCACTCGCGATGGTCCAGAGCTCGAGCC
CAAGCTACCTGCTACTAGCGTCACTGGACGCGGCGCGTTGGAGCCTCGCC
GGTGGAGCGAAGGATGGCAAGCGTCTCCTCGAAGAGGCGGTGCGCATCGT
GCGAGGGGTGCGAGAGGAGCTGTCGAGCATGGAAGACCTGCTACTAGCGT
CACTGGACGCGGCGCGTTGGAGCCTCGCCGGTGGAGCGAAGGATGGCAAG
CGTCTCCTCGAAGAGGCGGTGCGCATCGTGCGAGGGGTGCGAGAGGAGCT
GTCGAGCATGGAAGGTATCGATGTCATCGAGCTGGAAGGGGAGGAAGGGC
GGGAGGCGGGGTTCGTCGGGATGGACCCTCTGCGTCTTACGGTGTCTTTC
AACGGGAGCCTCGGAGCATACGAAGCCGACGACCTGCTTGAGGAAGGTAT
CGATGTCATCGAGCTGGAAGGGGAGGAAGGGCGGGAGGCGGGGTTCGTCG
GGATGGACCCTCTGCGTCTTACGGTGTCTTTCAACGGGAGCCTCGGAGCA
TACGAAGCCGACGACCTGCTTGAGGAAGAATTTGGCGTGTACTCGGAGCT
CCCGACCGCCAATTACATCACTTTCGTCTTCGGTCCGGGCTCTACCTTCG
AGCACGGACGTACTCTGACGGAGGCGTTACGACAGGCCAATCGAATTTGG
CGTGTACTCGGAGCTCCCGACCGCCAATTACATCACTTTCGTCTTCGGTC
CGGGCTCTACCTTCGAGCACGGACGTACTCTGACGGAGGCGTTACGACAG
GCCAATCGTAAAGCGATATCTCGGCGAGGGACACTATCGCCCAACGATGG
GCCGTCGGACGCGAGAGCTTCTTCGGCGCGTTCGACTGCCCCTGCCCGCC
AGCTTTGCACCCCTCGTAAAGCGATATCTCGGCGAGGGACACTATCGCCC
AACGATGGGCCGTCGGACGCGAGAGCTTCTTCGGCGCGTTCGACTGCCCC
TGCCCGCCAGCTTTGCACCCCTCGGGAAGCGTTCTTTCGCCCTTCCAGGT
TCGTAGCTGCGGTTGACGCTGTTGGCCTCGCCAGCGCAGAGACGGTGTGC
CCTTACCCTCCAGGGAAGCGTTCTTTCGCCCTTCCAGGTTCGTAGCTGCG
GTTGACGCTGTTGGCCTCGCCAGCGCAGAGACGGTGTGCCCTTACCCTCC
AGGCATCCCAGCGCTGTTGCCAGGCGAGGAGATTACTCAGGAGGCTTTGG
ACTTGCTGGCGACCGTTAAGGACGCGGGTAGCTTCATCTCTGGGTGCACG
GACCCCTCGTTCGCGACGATAAGAGTCGTGCGCGACACACCCGAGTTCGA
CTAAGCATCCCAGCGCTGTTGCCAGGCGAGGAGATTACTCAGGAGGCTTT
GGACTTGCTGGCGACCGTTAAGGACGCGGGTAGCTTCATCTCTGGGTGCA
CGGACCCCTCGTTCGCGACGATAAGAGTCGTGCGCGACACACCCGAGTTC
GACTAA
back to top