mRNA_H-elongata_contig86821.16240.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86821.16240.1
Unique NamemRNA_H-elongata_contig86821.16240.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86821.16240.1 vs. uniprot
Match: D7FXQ1_ECTSI (Kynurenine 3-Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXQ1_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 5.460e-7
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = -1 
Query:  511 GDAIKSVKPYFGLGVNSAFEDCMELDRCERE 603
            GDAIKSVKPYFGLGVN+AFEDC+ LDRC  E
Sbjct:  348 GDAIKSVKPYFGLGVNTAFEDCIALDRCLEE 378
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86821.16240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXQ1_ECTSI5.460e-783.87Kynurenine 3-Monooxygenase n=2 Tax=Ectocarpus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86821contigH-elongata_contig86821:1378..1995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size618
Cds size408
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931269.4285657-UTR-H-elongata_contig86821:1377..15871622931269.4285657-UTR-H-elongata_contig86821:1377..1587Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86821 1378..1587 +
1691679767.1883724-UTR-H-elongata_contig86821:1377..15871691679767.1883724-UTR-H-elongata_contig86821:1377..1587Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86821 1378..1587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931269.4474435-CDS-H-elongata_contig86821:1587..19951622931269.4474435-CDS-H-elongata_contig86821:1587..1995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86821 1588..1995 +
1691679767.196838-CDS-H-elongata_contig86821:1587..19951691679767.196838-CDS-H-elongata_contig86821:1587..1995Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86821 1588..1995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86821.16240.1prot_H-elongata_contig86821.16240.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86821 1588..1995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86821.16240.1

>prot_H-elongata_contig86821.16240.1 ID=prot_H-elongata_contig86821.16240.1|Name=mRNA_H-elongata_contig86821.16240.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MRMILHRRRYITRAAAPRAWLSGSGCRWARRGGERLRARASLNLINNYVL
YLTSSSLVLHDVALRVLSVPSQARARVIEVASGPLRRVTPICLHPAANTS
LTLAPVELHAVFEGAVDSESKIGFHRFDRVACGQW*
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mRNA from alignment at H-elongata_contig86821:1378..1995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86821.16240.1 ID=mRNA_H-elongata_contig86821.16240.1|Name=mRNA_H-elongata_contig86821.16240.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=618bp|location=Sequence derived from alignment at H-elongata_contig86821:1378..1995+ (Himanthalia elongata Himel1 dioecious)
TGTGCCGATGTGGCGAGTAATTGGGGCGGCAGAACGACGGTGTGTGGGGG
CCAGGCGGAGGCCATCGTGCACGGGGAATGAGAAGACGTGCGCCTGGTAT
AATAGTGTCTTCGAGATACGTCGTCGACAGATGTCATATATTTTTTAAGT
CACTAGGAGGCAAGCCGCAAAAAACAAACACGACTCCTCTCCCCCTGAAG
AGGAATTGCGATGCGTATGATTCTACACAGGAGACGATACATAACCCGTG
CAGCAGCACCACGTGCTTGGTTATCGGGCTCTGGCTGTCGATGGGCCAGG
CGGGGCGGGGAACGTTTGCGGGCACGAGCGAGTTTAAACCTCATCAACAA
CTACGTCTTGTATTTGACGTCAAGTAGTCTTGTCCTCCATGATGTCGCAC
TTCGGGTTTTATCTGTTCCGAGCCAAGCGAGAGCTCGAGTGATCGAGGTC
GCGAGCGGACCACTTCGGAGGGTAACACCAATCTGCCTTCATCCTGCGGC
TAACACTTCGCTCACGCTCGCACCTGTCGAGCTCCATGCAGTCTTCGAAG
GCGCTGTTGACTCCGAGTCCAAAATAGGGTTTCACAGATTTGATCGCGTC
GCCTGCGGACAGTGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig86821:1378..1995+

>mRNA_H-elongata_contig86821.16240.1 ID=mRNA_H-elongata_contig86821.16240.1|Name=mRNA_H-elongata_contig86821.16240.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig86821:1378..1995+ (Himanthalia elongata Himel1 dioecious)
ATGCGTATGATTCTACACAGGAGACGATACATAACCCGTGCAGCAGCACC
ACGTGCTTGGTTATCGGGCTCTGGCTGTCGATGGGCCAGGCGGGGCGGGG
AACGTTTGCGGGCACGAGCGAGTTTAAACCTCATCAACAACTACGTCTTG
TATTTGACGTCAAGTAGTCTTGTCCTCCATGATGTCGCACTTCGGGTTTT
ATCTGTTCCGAGCCAAGCGAGAGCTCGAGTGATCGAGGTCGCGAGCGGAC
CACTTCGGAGGGTAACACCAATCTGCCTTCATCCTGCGGCTAACACTTCG
CTCACGCTCGCACCTGTCGAGCTCCATGCAGTCTTCGAAGGCGCTGTTGA
CTCCGAGTCCAAAATAGGGTTTCACAGATTTGATCGCGTCGCCTGCGGAC
AGTGGTAGATGCGTATGATTCTACACAGGAGACGATACATAACCCGTGCA
GCAGCACCACGTGCTTGGTTATCGGGCTCTGGCTGTCGATGGGCCAGGCG
GGGCGGGGAACGTTTGCGGGCACGAGCGAGTTTAAACCTCATCAACAACT
ACGTCTTGTATTTGACGTCAAGTAGTCTTGTCCTCCATGATGTCGCACTT
CGGGTTTTATCTGTTCCGAGCCAAGCGAGAGCTCGAGTGATCGAGGTCGC
GAGCGGACCACTTCGGAGGGTAACACCAATCTGCCTTCATCCTGCGGCTA
ACACTTCGCTCACGCTCGCACCTGTCGAGCTCCATGCAGTCTTCGAAGGC
GCTGTTGACTCCGAGTCCAAAATAGGGTTTCACAGATTTGATCGCGTCGC
CTGCGGACAGTGGTAG
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