mRNA_H-elongata_contig86755.16236.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86755.16236.1
Unique NamemRNA_H-elongata_contig86755.16236.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig86755.16236.1 vs. uniprot
Match: D7FH68_ECTSI (Aa_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH68_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 2.420e-34
Identity = 60/98 (61.22%), Postives = 81/98 (82.65%), Query Frame = 1
Query:    1 VQVHSKFVNPTRERLRGLLHGTIALAATLYLIFGVGGYFYAYKETKDDILLNFDPSDKVIVLGRLGMGVTMLVAISLMVIPCRDIVLSILTSMGSSVQ 294
            + VHS FVNPTRERL+GLLHGT+ L + LY++  + GY YAY+ TKDDILLNF PSD+V+++GRLGMG+TMLVAI+++V+PCRDIV  ++ S+   +Q
Sbjct:  119 LSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEGTKDDILLNFAPSDRVMIVGRLGMGLTMLVAITILVLPCRDIVFLVMDSVAEKLQ 216          
BLAST of mRNA_H-elongata_contig86755.16236.1 vs. uniprot
Match: A0A835YKB4_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB4_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.010e-27
Identity = 53/103 (51.46%), Postives = 74/103 (71.84%), Query Frame = 1
Query:    1 VQVHSKFVNPTRERLRGLLHGTIALAATLYLIFGVGGYFYAYKETKDDILLNFDPSDKVIVLGRLGMGVTMLVAISLMVIPCRDIVLSILTSMGSSVQVRDSA 309
            + VH+  VNPTRERL+G++H ++    ++YL  G  GYFYAY  T+DDILLNF PSDKV+V GRLG+G+TMLVAI ++++PCRD    + + +   V  + SA
Sbjct:  198 LSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNFAPSDKVVVWGRLGLGITMLVAIPMLLLPCRDAFEELASQLYEVVTAKFSA 300          
BLAST of mRNA_H-elongata_contig86755.16236.1 vs. uniprot
Match: A0A7S2UXQ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXQ2_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 6.710e-22
Identity = 43/94 (45.74%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 VQVHSKFVNPTRERLRGLLHGTIALAATLYLIFGVGGYFYAYKETKDDILLNFDPSDKVIVLGRLGMGVTMLVAISLMVIPCRDIVLSILTSMG 282
            + VHS+ VNPTR+R++ ++H  ++L+  +YL+ G+ GYFYAY+ TKD+I LNF  SDK++V+GR+G+  T+  A+ +M IPCR+ +L    S+ 
Sbjct:  132 LSVHSQLVNPTRQRVKSMIHSAMSLSTLIYLLMGLLGYFYAYENTKDNIFLNFSFSDKLLVVGRVGLFATLTCALPMMAIPCRENLLEFYNSIA 225          
BLAST of mRNA_H-elongata_contig86755.16236.1 vs. uniprot
Match: A0A7S4RNK3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNK3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 9.520e-19
Identity = 38/87 (43.68%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    7 VHSKFVNPTRERLRGLLHGTIALAATLYLIFGVGGYFYAYKETKDDILLNFDPSDKVIVLGRLGMGVTMLVAISLMVIPCRDIVLSI 267
            +    VNPTR+R+R ++ G +A +  L   FG+GGY YA  +T  +ILLNF+P D+VI++G++G GVT+ +A+++M++PCR+ +L++
Sbjct:  175 IQGSLVNPTRQRIRQIIDGAVAASFVLTFSFGLGGYLYAGDDTNGNILLNFEPGDRVIIVGKVGCGVTITLAMAMMLLPCRETLLAL 261          
BLAST of mRNA_H-elongata_contig86755.16236.1 vs. uniprot
Match: A0A7S4RQ47_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RQ47_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.200e-18
Identity = 38/87 (43.68%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    7 VHSKFVNPTRERLRGLLHGTIALAATLYLIFGVGGYFYAYKETKDDILLNFDPSDKVIVLGRLGMGVTMLVAISLMVIPCRDIVLSI 267
            +    VNPTR+R+R ++ G +A +  L   FG+GGY YA  +T  +ILLNF+P D+VI++G++G GVT+ +A+++M++PCR+ +L++
Sbjct:  276 IQGSLVNPTRQRIRQIIDGAVAASFVLTFSFGLGGYLYAGDDTNGNILLNFEPGDRVIIVGKVGCGVTITLAMAMMLLPCRETLLAL 362          
BLAST of mRNA_H-elongata_contig86755.16236.1 vs. uniprot
Match: A0A7S1BVU6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVU6_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 8.820e-18
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 VQVHSKFVNPTRERLRGLLHGTIALAATLYLIFGVGGYFYAYKETKDDILLNFDPSDKVIVLGRLGMGVTMLVAISLMVIPCRDIVLSI 267
            + VH   V+PTR R+R ++ G+I     L+  FG+GGY YA   T D+ILLNFDP DKVI+LG++  G+++ +A+ L+V+P R+  L I
Sbjct:  286 LSVHCALVHPTRRRVREVIGGSIGSCCILFYAFGIGGYCYALDHTLDNILLNFDPHDKVIILGKISFGISLTLAMPLVVLPARECFLMI 374          
BLAST of mRNA_H-elongata_contig86755.16236.1 vs. uniprot
Match: A0A7S2R5W0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R5W0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.440e-17
Identity = 36/88 (40.91%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    4 QVHSKFVNPTRERLRGLLHGTIALAATLYLIFGVGGYFYAYKETKDDILLNFDPSDKVIVLGRLGMGVTMLVAISLMVIPCRDIVLSI 267
            Q+ +  ++PTR+RLR ++H ++ +   L  +FGV GY Y+   TKD+ILLNF+ SD++I+ GR+G G  +++ ++++ +PCRD +L+I
Sbjct:  303 QIQNTIIHPTRKRLRTVIHSSVTVCFVLMYVFGVAGYLYSGNNTKDNILLNFNVSDRLILFGRMGCGTNLMLNLAIVTLPCRDSMLAI 390          
BLAST of mRNA_H-elongata_contig86755.16236.1 vs. uniprot
Match: A0A7S3VE83_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VE83_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.080e-17
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 VQVHSKFVNPTRERLRGLLHGTIALAATLYLIFGVGGYFYAYKETKDDILLNFDPSDKVIVLGRLGMGVTMLVAISLMVIPCRDIVLSIL 270
            V+V + F  PT  R+R +L  +IA    L+  F + GYFYAY + K +I LNFDP+D +I+LGR+GMG+T++    ++ +PCR+  LSI+
Sbjct:  265 VEVQANFKQPTLPRIRSVLRTSIASTFLLFEAFSLVGYFYAYNKCKGNIFLNFDPADPIIMLGRIGMGITLMFGTPVVTLPCREAFLSIM 354          
BLAST of mRNA_H-elongata_contig86755.16236.1 vs. uniprot
Match: A0A7S2UKG8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKG8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.610e-16
Identity = 35/84 (41.67%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 VQVHSKFVNPTRERLRGLLHGTIALAATLYLIFGVGGYFYAYKETKDDILLNFDPSDKVIVLGRLGMGVTMLVAISLMVIPCRD 252
            + VH   + PTR R+R ++H  +     L  +FG+ GY+YA   T+ +ILLNFD SD VI+ GR+G G+ +L+A++++ +PCR+
Sbjct:  303 LSVHGALIQPTRRRIRTVIHSAVTACFCLTYVFGLAGYWYARDATEGNILLNFDFSDPVILAGRMGCGINILLAMAMVTLPCRE 386          
BLAST of mRNA_H-elongata_contig86755.16236.1 vs. uniprot
Match: A0A0G4EY27_VITBC (Aa_trans domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EY27_VITBC)

HSP 1 Score: 78.6 bits (192), Expect = 8.650e-15
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   10 HSKFVNPTRERLRGLLHGTIALAATLYLIFGVGGYFYAYKETKDDILLNFDPSDKVIVLGRLGMGVTMLVAISLMVIPCRDIVLSILTSMGSS 288
            HS+   PTR+R+RG+ H TIA    LYL+ GV GY Y  +    +ILLNF P D +I +GR+ + VT+L ++ L+V+PCR  +  +L  M  S
Sbjct:  260 HSELAFPTRQRIRGVTHLTIATCTFLYLVVGVFGYLYTREHVCANILLNFRPGDPLITVGRICLAVTVLGSVPLVVLPCRQALSRLLDLMFPS 352          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86755.16236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FH68_ECTSI2.420e-3461.22Aa_trans domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YKB4_9STRA2.010e-2751.46Transmembrane amino acid transporter protein-domai... [more]
A0A7S2UXQ2_9STRA6.710e-2245.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4RNK3_9STRA9.520e-1943.68Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RQ47_9STRA1.200e-1843.68Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1BVU6_9STRA8.820e-1846.07Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2R5W0_9STRA1.440e-1740.91Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S3VE83_9STRA4.080e-1744.44Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2UKG8_9STRA9.610e-1641.67Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A0G4EY27_VITBC8.650e-1544.09Aa_trans domain-containing protein n=2 Tax=Vitrell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86755contigH-elongata_contig86755:1433..2406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue2e-28
Seed eggNOG ortholog2880.D7FH68
KEGG koko:K14992
KEGG TC2.A.18.6.8
KEGG Pathwayko04727,map04727
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
Ec32 ortholog descriptionTransmembrane amino acid transporter
Ec32 orthologEc-13_000970.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categorysignal anchor
Exons2
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931269.1872683-CDS-H-elongata_contig86755:1432..16091622931269.1872683-CDS-H-elongata_contig86755:1432..1609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86755 1433..1609 -
1691679767.1059968-CDS-H-elongata_contig86755:1432..16091691679767.1059968-CDS-H-elongata_contig86755:1432..1609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86755 1433..1609 -
1622931269.2019284-CDS-H-elongata_contig86755:2268..24061622931269.2019284-CDS-H-elongata_contig86755:2268..2406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86755 2269..2406 -
1691679767.122466-CDS-H-elongata_contig86755:2268..24061691679767.122466-CDS-H-elongata_contig86755:2268..2406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86755 2269..2406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86755.16236.1prot_H-elongata_contig86755.16236.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86755 1433..2406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86755.16236.1

>prot_H-elongata_contig86755.16236.1 ID=prot_H-elongata_contig86755.16236.1|Name=mRNA_H-elongata_contig86755.16236.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
VQVHSKFVNPTRERLRGLLHGTIALAATLYLIFGVGGYFYAYKETKDDIL
LNFDPSDKVIVLGRLGMGVTMLVAISLMVIPCRDIVLSILTSMGSSVQVR
DSAW*
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mRNA from alignment at H-elongata_contig86755:1433..2406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86755.16236.1 ID=mRNA_H-elongata_contig86755.16236.1|Name=mRNA_H-elongata_contig86755.16236.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=974bp|location=Sequence derived from alignment at H-elongata_contig86755:1433..2406- (Himanthalia elongata Himel1 dioecious)
GTTCAGGTTCACTCGAAGTTCGTCAATCCCACCAGGGAGCGGCTCCGGGG CCTTCTCCACGGCACCATTGCCCTCGCCGCCACCCTCTACCTCATCTTCG GTGTCGGAGGATACTTCTACGCCTACAAAGAGACAAAGGTAGGTGTCCAT ACCAAGTCTGGCGCAGCATATCTTTTGTTCGTGTTTTTTCTTGCTTGTTT TTTATATTTTATTTCCTCTTGTTATGTTTTTGCCACGTTCTGTTGAATGT TCATTGTGTTTTAACGGTTTTTCGCTTAAAAAGCAAAAACTAGTTATTTG TTTCTTGGGGGGCTTTACAACTTGCATCTTTTAGCGTGCTTCAGTTAGCG CTCTGTACATATCTTTTGTTAATTTGGTTTTGATTTGTATTACTTTTAGT TCACTTTTACTGTATGCCTTTGTTCTCCACAGACTGAAGACATCGCAGTA CACATGAGGTAGCTAGTACTGGTCCTCCCACGGATAGTAGGGGATAACAT GATAGGGGATAACATACCAGCTATGGTTTCGCCGAAAATATCTTTAACGG CAGCAACGTTCGTCTTCGATCCTTGGAGGAGGATCTTATTACATGTCACC TACGGTTTACAAGTATTATTGATGGGGTTTGCATATACTAACACTTGGCG TCGCCTGCTCCTGGCCCAGTCCCACTCGATGGGAATCGTCAAGGCGCTTC TGGGGCACTCATCATAGCGCACTTCTCTCTCTACCTCCCTTTACTTCCCT CTGTCTCCCTCTGTCTCCCTTTACCTCCCCTTCTTCTCAACGAACAGGAC GACATTTTACTTAACTTCGATCCAAGCGATAAGGTTATCGTTCTTGGCAG GCTTGGGATGGGAGTTACGATGCTTGTGGCCATCAGTCTAATGGTCATAC CATGCAGAGACATAGTCCTATCCATCTTGACCTCCATGGGGTCAAGCGTC CAGGTGAGAGATTCAGCCTGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig86755:1433..2406-

>mRNA_H-elongata_contig86755.16236.1 ID=mRNA_H-elongata_contig86755.16236.1|Name=mRNA_H-elongata_contig86755.16236.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig86755:1433..2406- (Himanthalia elongata Himel1 dioecious)
GTTCAGGTTCACTCGAAGTTCGTCAATCCCACCAGGGAGCGGCTCCGGGG
CCTTCTCCACGGCACCATTGCCCTCGCCGCCACCCTCTACCTCATCTTCG
GTGTCGGAGGATACTTCTACGCCTACAAAGAGACAAAGGTTCAGGTTCAC
TCGAAGTTCGTCAATCCCACCAGGGAGCGGCTCCGGGGCCTTCTCCACGG
CACCATTGCCCTCGCCGCCACCCTCTACCTCATCTTCGGTGTCGGAGGAT
ACTTCTACGCCTACAAAGAGACAAAGGACGACATTTTACTTAACTTCGAT
CCAAGCGATAAGGTTATCGTTCTTGGCAGGCTTGGGATGGGAGTTACGAT
GCTTGTGGCCATCAGTCTAATGGTCATACCATGCAGAGACATAGTCCTAT
CCATCTTGACCTCCATGGGGTCAAGCGTCCAGGTGAGAGATTCAGCCTGG
TAAGACGACATTTTACTTAACTTCGATCCAAGCGATAAGGTTATCGTTCT
TGGCAGGCTTGGGATGGGAGTTACGATGCTTGTGGCCATCAGTCTAATGG
TCATACCATGCAGAGACATAGTCCTATCCATCTTGACCTCCATGGGGTCA
AGCGTCCAGGTGAGAGATTCAGCCTGGTAA
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