mRNA_H-elongata_contig86727.16233.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86727.16233.1
Unique NamemRNA_H-elongata_contig86727.16233.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig86727.16233.1 vs. uniprot
Match: D8LNL4_ECTSI (Mitogen-activated protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNL4_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 3.110e-31
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 1
Query:    1 MDGFLTKRGRAHWKRRWFILEKHVITYFSKQGDLQPQGRMVLTADSQVTKLPTRVHAFQVTAAEKKLIAYADTSEERDRW 240
            +DG LTK+G   WKRRWFILE HVITYFSKQGDL+P+GRMVL A+S+VT LPTRVHAFQV    K L+ YADT EER+ W
Sbjct:   18 LDGHLTKKGGVQWKRRWFILEDHVITYFSKQGDLRPRGRMVLIAESRVTNLPTRVHAFQVITNAKALMVYADTLEERESW 97          
BLAST of mRNA_H-elongata_contig86727.16233.1 vs. uniprot
Match: A0A835Z2Y5_9STRA (Mitogen-activated protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y5_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.420e-28
Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 MDGFLTKRGRAHWKRRWFILEKHVITYFSKQGDLQPQGRMVLTADSQVTKLPTRVHAFQVTAAEKKLIAYADTSEERDRW 240
            ++GFLTK+G   WK+RWF LE HV+TY+S+QGD +P+GRMVL A+S+VT LPTR HAFQV    K L+ +ADT EE+D W
Sbjct:   11 LEGFLTKKGGVSWKKRWFTLEDHVVTYYSRQGDPKPRGRMVLNAESRVTNLPTRPHAFQVITNSKALMVFADTPEEKDHW 90          
BLAST of mRNA_H-elongata_contig86727.16233.1 vs. uniprot
Match: A0A6V1P443_HETAK (Mitogen-activated protein kinase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P443_HETAK)

HSP 1 Score: 108 bits (270), Expect = 6.150e-26
Identity = 47/80 (58.75%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 MDGFLTKRGRAHWKRRWFILEKHVITYFSKQGDLQPQGRMVLTADSQVTKLPTRVHAFQVTAAEKKLIAYADTSEERDRW 240
            ++GFLTK+G   WK+R+F+++ H ITYFSKQGD +P+GRMVL +DS+VT LP+R +AFQV    K L+ +ADT EERD+W
Sbjct:   12 LEGFLTKKGGVSWKKRYFMMKDHTITYFSKQGDAKPRGRMVLNSDSRVTNLPSRPNAFQVITNNKALMVFADTFEERDQW 91          
BLAST of mRNA_H-elongata_contig86727.16233.1 vs. uniprot
Match: W7U818_9STRA (Mitogen-activated protein kinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U818_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.080e-11
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    1 MDGFLTKRGRAHWKRRWFILEKHVITYFSKQGDLQPQGRMVLTADSQVTKLPTRVHAFQVTAAEKKLIAYADTSEERDRW 240
            ++G+L K+GR  WKRR+F L  H+ITY++K+GD + + +M LTA S  +   ++ + F +  A K     A+T +++  W
Sbjct:   30 VEGWLNKKGRMTWKRRYFTLHGHIITYYAKKGDAKCRNQMALTAQSVFSSSSSKKNGFSIVTAGKGFQLNAETPQDKHAW 109          
BLAST of mRNA_H-elongata_contig86727.16233.1 vs. uniprot
Match: A0A4D9D8Z4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8Z4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.100e-11
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    1 MDGFLTKRGRAHWKRRWFILEKHVITYFSKQGDLQPQGRMVLTADSQVTKLPTRVHAFQVTAAEKKLIAYADTSEERDRW 240
            ++G+L K+GR  WKRR+F L  H+ITY++K+GD + + +M LTA S  +   ++ + F +  A K     A+T +++  W
Sbjct:   30 VEGWLNKKGRMTWKRRYFTLHGHIITYYAKKGDAKCRNQMALTAQSVFSSSSSKKNGFSIVTAGKGFQLNAETPQDKHAW 109          
BLAST of mRNA_H-elongata_contig86727.16233.1 vs. uniprot
Match: A0A7S1U7I6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7I6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 9.420e-11
Identity = 28/80 (35.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    1 MDGFLTKRGRAHWKRRWFILEKHVITYFSKQGDLQPQGRMVLTADSQVTKLPTRVHAFQVTAAEKKLIAYADTSEERDRW 240
            ++G LTK+  A WKRR+F+L    I YF++Q + + +G++ L A+++V     +   FQV +    L+ +AD + E++RW
Sbjct:   16 LEGHLTKKSGAQWKRRFFVLTNDCIKYFTRQEETRVRGQLELNANTKVIDYRLKDFGFQVISNNTALMVHADDAREKERW 95          
BLAST of mRNA_H-elongata_contig86727.16233.1 vs. uniprot
Match: A2FHJ2_TRIVA (Non-specific serine/threonine protein kinase n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2FHJ2_TRIVA)

HSP 1 Score: 52.0 bits (123), Expect = 7.220e-6
Identity = 28/82 (34.15%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    7 GFLTKRGRA--HWKRRWFILEKHVITYFSKQGDLQPQGRMVLTADSQVTKLPT--RVHAFQVTAAEKKLIAYADTSEERDRW 240
            G+ TK+G     WK+RWF+LEK  + YF+K+G  + QGR+ + +   V+  P   +  AF++  +E+      DT +E   W
Sbjct:    5 GWGTKQGGLIKTWKKRWFVLEKDALVYFTKEGG-EEQGRIPIGSTCVVSPAPDCKKQPAFKIVTSERTYFIVTDTQKECSDW 85          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86727.16233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LNL4_ECTSI3.110e-3171.25Mitogen-activated protein kinase n=2 Tax=Ectocarpu... [more]
A0A835Z2Y5_9STRA5.420e-2861.25Mitogen-activated protein kinase n=1 Tax=Tribonema... [more]
A0A6V1P443_HETAK6.150e-2658.75Mitogen-activated protein kinase n=1 Tax=Heterosig... [more]
W7U818_9STRA1.080e-1136.25Mitogen-activated protein kinase n=1 Tax=Nannochlo... [more]
A0A4D9D8Z4_9STRA1.100e-1136.25Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1U7I6_9STRA9.420e-1135.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A2FHJ2_TRIVA7.220e-634.15Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86727contigH-elongata_contig86727:1582..1821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog2880.D8LF66
KEGG koko:K04371,ko:K14512
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04016,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04075,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04016,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04075,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00687
EggNOG free text desc.MAP kinase activity
EggNOG OGsKOG0660@1,KOG0660@2759
EC2.7.11.24
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiondouble HA-tagged mitogen activated protein kinase 2 mitogen-activated protein kinase
Ec32 orthologEc-08_006680.1
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931268.637471-CDS-H-elongata_contig86727:1581..18211622931268.637471-CDS-H-elongata_contig86727:1581..1821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86727 1582..1821 +
1691679766.9560254-CDS-H-elongata_contig86727:1581..18211691679766.9560254-CDS-H-elongata_contig86727:1581..1821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86727 1582..1821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86727.16233.1prot_H-elongata_contig86727.16233.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86727 1582..1821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86727.16233.1

>prot_H-elongata_contig86727.16233.1 ID=prot_H-elongata_contig86727.16233.1|Name=mRNA_H-elongata_contig86727.16233.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MDGFLTKRGRAHWKRRWFILEKHVITYFSKQGDLQPQGRMVLTADSQVTK
LPTRVHAFQVTAAEKKLIAYADTSEERDRW
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mRNA from alignment at H-elongata_contig86727:1582..1821+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86727.16233.1 ID=mRNA_H-elongata_contig86727.16233.1|Name=mRNA_H-elongata_contig86727.16233.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig86727:1582..1821+ (Himanthalia elongata Himel1 dioecious)
ATGGACGGCTTCCTGACAAAGAGGGGTAGGGCACATTGGAAACGTCGCTG GTTTATCCTGGAGAAGCATGTCATCACATACTTCAGCAAGCAAGGAGACT TGCAGCCTCAAGGCCGCATGGTGCTCACCGCCGATTCGCAGGTAACTAAG CTTCCTACCCGAGTGCACGCGTTCCAAGTGACTGCGGCCGAGAAAAAATT GATTGCCTACGCCGATACCAGTGAGGAGAGAGACCGTTGG
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Coding sequence (CDS) from alignment at H-elongata_contig86727:1582..1821+

>mRNA_H-elongata_contig86727.16233.1 ID=mRNA_H-elongata_contig86727.16233.1|Name=mRNA_H-elongata_contig86727.16233.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig86727:1582..1821+ (Himanthalia elongata Himel1 dioecious)
ATGGACGGCTTCCTGACAAAGAGGGGTAGGGCACATTGGAAACGTCGCTG
GTTTATCCTGGAGAAGCATGTCATCACATACTTCAGCAAGCAAGGAGACT
TGCAGCCTCAAGGCCGCATGGTGCTCACCGCCGATTCGCAGGTAACTAAG
CTTCCTACCCGAGTGCACGCGTTCCAAGTGACTGCGGCCGAGAAAAAATT
GATTGCCTACGCCGATACCAGTGAGGAGAGAGACCGTTGGATGGACGGCT
TCCTGACAAAGAGGGGTAGGGCACATTGGAAACGTCGCTGGTTTATCCTG
GAGAAGCATGTCATCACATACTTCAGCAAGCAAGGAGACTTGCAGCCTCA
AGGCCGCATGGTGCTCACCGCCGATTCGCAGGTAACTAAGCTTCCTACCC
GAGTGCACGCGTTCCAAGTGACTGCGGCCGAGAAAAAATTGATTGCCTAC
GCCGATACCAGTGAGGAGAGAGACCGTTGG
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