prot_H-elongata_contig8671.16229.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8671.16229.1
Unique Nameprot_H-elongata_contig8671.16229.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length282
Homology
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BLAST of mRNA_H-elongata_contig8671.16229.1 vs. uniprot
Match: A0A6H5KY95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY95_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.080e-57
Identity = 99/148 (66.89%), Postives = 119/148 (80.41%), Query Frame = 0 
Query:  137 ELGEVLEGERGLEALFTEDWSDMPANDGMVKTQVPLPDISTFKPTNRAATSMEQREKGATPGAV--RGDDGDDNVIPTS-LSDFKSKLPPIVDREEERLALSAAERFDEGPIVKGLKTATWFSICTLVAWEVYINSPLFQ-PQAPPPI 280
            ELG+VLEG+R +EALFT+DWS MPAN GM K+ VPLPDIS FKP+ RA +++EQREK +  G V   GD  DD+ +P S L+ F+SKL PIVDREEER   +AAERF+EGPIV+GLKTATWFSICTLV WE+YINSP F  P++PPPI
Sbjct:  154 ELGDVLEGDRSVEALFTDDWSGMPANTGMTKSNVPLPDISEFKPSRRAESTLEQREKKSAVGLVVGAGDGDDDDAVPASRLAGFESKLTPIVDREEERRQKNAAERFEEGPIVRGLKTATWFSICTLVLWEIYINSPWFHAPESPPPI 301
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BLAST of mRNA_H-elongata_contig8671.16229.1 vs. uniprot
Match: D8LB46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB46_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.920e-55
Identity = 96/150 (64.00%), Postives = 117/150 (78.00%), Query Frame = 0 
Query:  137 ELGEVLEGERGLEALFTEDWSDMPANDGMVKTQVPLPDISTFKPTNRAATSMEQREKGATPGAV----RGDDGDDNVIPTS-LSDFKSKLPPIVDREEERLALSAAERFDEGPIVKGLKTATWFSICTLVAWEVYINSPLFQ-PQAPPPI 280
            ELG+VLEG+R +EALF++DWS MPAN GM K+ VPLPDIS FKP+ RA +++EQREK +  G V     G D D + +P S L+ F+SKL PIVDREEE    +AAERF+EGPIV+GLKTATWFSICTLV WEVYINSP F  P++PPP+
Sbjct:   59 ELGDVLEGDRSVEALFSDDWSGMPANTGMTKSNVPLPDISEFKPSRRAESTLEQREKKSAVGLVVGPGDGSDDDGDAVPASRLAGFESKLTPIVDREEEWRKKNAAERFEEGPIVRGLKTATWFSICTLVLWEVYINSPWFHAPESPPPM 208
[Close]
BLAST of mRNA_H-elongata_contig8671.16229.1 vs. uniprot
Match: A0A835YVC2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.170e-13
Identity = 45/127 (35.43%), Postives = 63/127 (49.61%), Query Frame = 0 
Query:  148 LEALFTEDWSDMPANDGMVKTQVPLPDISTFKPTNRAATSMEQREKGATPGAVRGDDGDDNVIPTSLSDFKSKLPPIVDREEERLALSAAERFDEGPIVKGLKTATWFSICTLVAWEVYINSPLFQP 274
            L  LF +DWS M A  GM   +    D     P+    T +   +K                       F+S+L PI   + E   L+AAERF EG +VK +K ATWF++ +LVAWE+Y++SP F+P
Sbjct:   75 LADLFVDDWSGMQAPRGMKDKK----DAKEPLPSKDGKTELPDLKK-----------------------FESQLTPISGMKPEVRELTAAERFQEGNVVKAIKAATWFALLSLVAWEIYLHSPFFKP 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8671.16229.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KY95_9PHAE1.080e-5766.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB46_ECTSI1.920e-5564.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YVC2_9STRA6.170e-1335.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..281
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 33..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 21..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..20
NoneNo IPR availableTMHMMTMhelixcoord: 20..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8671contigH-elongata_contig8671:1207..2428 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8671.16229.1mRNA_H-elongata_contig8671.16229.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8671 978..3982 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8671.16229.1 ID=prot_H-elongata_contig8671.16229.1|Name=mRNA_H-elongata_contig8671.16229.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=282bp
MLSCAAAKVARFMSRFHDAMAFASLATCLTFTMNSIVALRINSSPAAFPT
THVTTHVSSSRTSNVCTFRPSQTSRSHRALLMAAGGKKRRKRKKGSDDSE
SPGASLASGAAVPGLSQDDVSKAGNGDGEPEFQSAMELGEVLEGERGLEA
LFTEDWSDMPANDGMVKTQVPLPDISTFKPTNRAATSMEQREKGATPGAV
RGDDGDDNVIPTSLSDFKSKLPPIVDREEERLALSAAERFDEGPIVKGLK
TATWFSICTLVAWEVYINSPLFQPQAPPPIT*
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