mRNA_H-elongata_contig86705.16228.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig86705.16228.1 vs. uniprot
Match: A0A6H5KRG7_9PHAE (GP-PDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRG7_9PHAE) HSP 1 Score: 328 bits (841), Expect = 1.490e-105 Identity = 177/333 (53.15%), Postives = 219/333 (65.77%), Query Frame = 1
Query: 7 TGEWIENLTLAQTRERLKHGVSTLEEMLQERAIVRSAVHLYVDLKHTEVARPVLHVLWKAVEHWGWTSERLLVGAFRQLDLLQVNAFRQAVPELAGLRTVCILDGIPISLGRDLDTLGAAALSIGKNNVTPDIVADCQRRGVQVWVWTVNSLHSMERLLKMGVDGICSDYPERVIEANRKFRQGGEETSQTSSATFWFPITRDPSAVVDFRGLVTETGANG-----------GSADESPAK---------------------------KAERSVDSPALGGVFSRGWNARDASE---QQRLMAAVYGDLFGARDVTVVAVREAKILAELCSRA 882
+GEWIENLTLAQTRERLKH VST EEMLQE+ + S VHLY+D+KHTE+ RPVLH + +AV+ WGWT++RL+V FRQLDLLQVNA+RQA+PELA LRT CI+DG P++L RD L LS GK++V+PD+VADCQRRG+QVWVWTVNSLH MERLLKMGVDG+C+DYP V E+NR+ R + SQT +ATF FP + VD RGL + G G+ S A KAE S D+ LGG +SR +++E QQRL+AA+YGDL G RD V V +AK+L ++CSRA
Sbjct: 171 SGEWIENLTLAQTRERLKHNVSTFEEMLQEKVLSESGVHLYIDMKHTEIVRPVLHAVMQAVDRWGWTADRLVVATFRQLDLLQVNAYRQAIPELANLRTACIMDGGPLTLARDFKALKVDILSTGKDHVSPDLVADCQRRGIQVWVWTVNSLHFMERLLKMGVDGLCTDYPGLVHESNRRLRP---QASQTDAATFPFPQGPGAYSGVDLRGLAAPASSEGKAVGSTALDSDGNNSSSTASMSGSXXXXXXXXXXXXXXXXXXXXTTNKAEDSTDATVLGGWYSRCDTCEESAEGSDQQRLIAALYGDLAGVRDFAVRTVEDAKVLVKVCSRA 500
BLAST of mRNA_H-elongata_contig86705.16228.1 vs. uniprot
Match: A0A835YQF6_9STRA (PLC-like phosphodiesterase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQF6_9STRA) HSP 1 Score: 194 bits (492), Expect = 3.280e-56 Identity = 87/177 (49.15%), Postives = 123/177 (69.49%), Query Frame = 1
Query: 7 TGEWIENLTLAQTRERLKHGVSTLEEMLQERAIVRSAVHLYVDLKHTEVARPVLHVLWKAVEHWGWTSERLLVGAFRQLDLLQVNAFRQAVPELAGLRTVCILDGIPISLGRDLDTLGAAALSIGKNNVTPDIVADCQRRGVQVWVWTVNSLHSMERLLKMGVDGICSDYPERVIEA 537
+G+W +++T+A+ R L TL+EML +R + S VHLY DLKHT + RP + + AV GW + R +V F+Q++LL++NAFRQA+PEL GLRT ILD IP+SL RD + LG A+S+G+ V P+ VADC RRG+++W WTVN ++ L ++G+DGIC+DYPE V A
Sbjct: 152 SGKWYQDMTIAKVRSLLGRPHPTLDEMLADRRLRDSGVHLYFDLKHTNIVRPTMRSIVAAVTRGGWHASRFVVATFKQVELLEINAFRQAIPELRGLRTAAILDAIPLSLARDFEALGCCAVSVGQYCVCPEFVADCHRRGLEMWAWTVNHKSMVDELFRLGIDGICTDYPELVHAA 328
BLAST of mRNA_H-elongata_contig86705.16228.1 vs. uniprot
Match: UPI00140CD679 (glycerophosphodiester phosphodiesterase n=1 Tax=Pseudomaricurvus alcaniphilus TaxID=1166482 RepID=UPI00140CD679) HSP 1 Score: 99.0 bits (245), Expect = 7.090e-21 Identity = 58/159 (36.48%), Postives = 92/159 (57.86%), Query Frame = 1
Query: 67 VSTLEEMLQERAIVRSAVHLYVDLKHTEVARPVLHVLWKAVEHWGWTSERLLVGAFRQLDLLQVNAFRQAVPELAGLRTVCILDGIPISLGRDLDTLGAAALSIGKNNVTPDIVADCQRRGVQVWVWTVNSLHSMERLLKMGVDGICSDYPERVIEANR 543
++TLEE+L+ +V L ++LK + A PV H+L + E+ LV +F LLQ FRQ +P G++ +L+GIP+ L D LGA +L N V ++V +R+G+QVWV+TVN + + ++GVDG+ +D+P R++E NR
Sbjct: 91 IATLEEVLE---LVNDRALLNIELKGPDCAAPVAHLLEAYSRERQLSLEQYLVSSFDHRQLLQ---FRQLLP---GVKRGVLLEGIPLDLAACSDALGAWSLHPSLNFVNAELVTAAKRQGLQVWVYTVNEADDWQLMCELGVDGVFTDFPGRLLEWNR 240
BLAST of mRNA_H-elongata_contig86705.16228.1 vs. uniprot
Match: A0A363UKI5_9GAMM (Glycerophosphodiester phosphodiesterase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A363UKI5_9GAMM) HSP 1 Score: 87.8 bits (216), Expect = 8.610e-17 Identity = 47/140 (33.57%), Postives = 78/140 (55.71%), Query Frame = 1
Query: 124 LYVDLKHTEVARPVLHVLWKAVEHWGWTSERLLVGAFRQLDLLQVNAFRQAVPELAGLRTVCILDGIPISLGRDLDTLGAAALSIGKNNVTPDIVADCQRRGVQVWVWTVNSLHSMERLLKMGVDGICSDYPERVIEANR 543
L ++LK +A ++H + AV+ GW +LV +F +L QV A P +A C G+P+ + LGA ++ + + P+++AD + RG+ ++V+TVN +ERL +GVDG+ +DYPERV +R
Sbjct: 112 LNLELKARGLAEVIVHQIRHAVQVLGWDWSEILVSSFDLHELRQVKALE---PRIAVGALYC---GVPLDYAASAEALGAVSVHLSHEFLAPNLLADARARGLAIYVYTVNQPEEIERLRALGVDGLFTDYPERVAVLDR 245
BLAST of mRNA_H-elongata_contig86705.16228.1 vs. uniprot
Match: A0A5C7KYV0_9GAMM (Glycerophosphodiester phosphodiesterase n=1 Tax=Sinobacteraceae bacterium TaxID=1969813 RepID=A0A5C7KYV0_9GAMM) HSP 1 Score: 86.3 bits (212), Expect = 2.270e-16 Identity = 58/156 (37.18%), Postives = 86/156 (55.13%), Query Frame = 1
Query: 67 VSTLEEMLQERAIVRSAVHLYVDLKHTE-VARPVLHVLWKAVEHWGWTSERLLVGAFRQLDLLQVNAFRQAVPELAGLRTVCILDGIPISLGRDLDTLGAAALSIGKNNVTPDIVADCQRRGVQVWVWTVNSLHSMERLLKMGVDGICSDYPERVI 531
+ TL+E L ++ V + V+LK A V VL + V GW +E+LLV +F +L + FRQ PE+ +C G+P+ LGA+ L++ V IVAD Q RG++V+V+TVN + R+ MGVDG+ +DYPERV+
Sbjct: 83 IPTLQEALD---LIDQRVGINVELKTWNGCAAAVARVLREYVAQ-GWPTEKLLVSSFHLPELYE---FRQLAPEIPVGALLC---GVPLDWAGCAAELGASTLNLSDEFVDERIVADAQARGLKVYVYTVNHPAEIARMRAMGVDGVFTDYPERVL 228
BLAST of mRNA_H-elongata_contig86705.16228.1 vs. uniprot
Match: A0A2D8KK45_9FLAO (Glycerophosphodiester phosphodiesterase n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D8KK45_9FLAO) HSP 1 Score: 84.0 bits (206), Expect = 2.350e-15 Identity = 52/159 (32.70%), Postives = 86/159 (54.09%), Query Frame = 1
Query: 58 KHGVSTLEEMLQERAIVRSAVHLYVDLKHTEVARPVLHVLWKAVEHWGWTSERLLVGAFRQLDLLQVNAFRQAVPELAGLRTVCILDGIPISLGRDLDTLGAAALSIGKNNVTPDIVADCQRRGVQVWVWTVNSLHSMERLLKMGVDGICSDYPERVIE 534
K+ + TL E+L +V V L ++LK +E A ++ K +E WTSE+ ++ +F L+L + + VP +A L LD +PI+ + L A A++ ++ P V + G +V+ +TVNS + +L+ + VDGI +DYPERV E
Sbjct: 97 KYIIPTLTEVLD---LVGGKVFLNIELKGSETAILTNQLIKKYIEKGNWTSEKFIISSFNWLELEKFYEINKDVP-IAVLTDADPLDALPIA-----EKLNAKAINPSYKSLNPKNVKKIHKAGYKVYPYTVNSKEKISKLISLNVDGIITDYPERVSE 246
BLAST of mRNA_H-elongata_contig86705.16228.1 vs. uniprot
Match: A0A6L4Y9J3_9BACT (GlpQ n=1 Tax=bacterium TaxID=1869227 RepID=A0A6L4Y9J3_9BACT) HSP 1 Score: 83.6 bits (205), Expect = 2.640e-15 Identity = 48/156 (30.77%), Postives = 83/156 (53.21%), Query Frame = 1
Query: 67 VSTLEEMLQERAIVRSAVHLYVDLKHTEVARPVLHVLWKAVEHWGWTSERLLVGAFRQLDLLQVNAFRQAVPELAGLRTVCILDGIPISLGRDLDTLGAAALSIGKNNVTPDIVADCQRRGVQVWVWTVNSLHSMERLLKMGVDGICSDYPERVIE 534
+ TLEE+ V L ++LK ++ PV+ ++ + VE GW+ E +LV +F +LL V V RT ++ G+PI + LG ++ + + + V D +RG++V+V+TVN + + +GVDG+ +DYPERV++
Sbjct: 84 IPTLEEVFTS---VNGRAGLNIELKGSQTTEPVISLIKEQVEQ-GWSYENILVSSFNHRELLNVKRLNPKV------RTGALIVGLPIDNAAFAERLGCYSVHLSIDFIDKVFVDDAHKRGLKVFVFTVNEPEDIVLMESLGVDGVFTDYPERVVK 229
BLAST of mRNA_H-elongata_contig86705.16228.1 vs. uniprot
Match: A0A3R6ZVH9_9BACT (Glycerophosphodiester phosphodiesterase n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=A0A3R6ZVH9_9BACT) HSP 1 Score: 83.2 bits (204), Expect = 2.830e-15 Identity = 44/154 (28.57%), Postives = 85/154 (55.19%), Query Frame = 1
Query: 67 VSTLEEMLQERAIVRSAVHLYVDLKHTEVARPVLHVLWKAVEHWGWTSERLLVGAFRQLDLLQVNAFRQAVPELAGLRTVCILDGIPISLGRDLDTLGAAALSIGKNNVTPDIVADCQRRGVQVWVWTVNSLHSMERLLKMGVDGICSDYPERV 528
+ TL E+ +V V + V+LK A PV ++ + ++ WT+E LV +F D ++ F++ +PE+ R ++ GIPI + + + A ++ + + +AD +RG +V+V+TVN + ++ ++GVDG+ S+YP+R+
Sbjct: 81 IPTLSEVFD---LVDKKVPINVELKGEHTAEPVAQLIGQYIKEKDWTAEHFLVSSF---DHYELKRFKELMPEI---RVGALIAGIPIGYSKFAEEVSAYSVHLSLDFARQKYIADAHQRGFKVFVYTVNDKDDINKMKELGVDGLFSNYPDRI 225
BLAST of mRNA_H-elongata_contig86705.16228.1 vs. uniprot
Match: A0A0G0D7U5_9BACT (Glycerophosphoryl diester phosphodiesterase n=1 Tax=Parcubacteria group bacterium GW2011_GWA2_36_10 TaxID=1618808 RepID=A0A0G0D7U5_9BACT) HSP 1 Score: 82.8 bits (203), Expect = 3.300e-15 Identity = 43/154 (27.92%), Postives = 84/154 (54.55%), Query Frame = 1
Query: 67 VSTLEEMLQERAIVRSAVHLYVDLKHTEVARPVLHVLWKAVEHWGWTSERLLVGAFRQLDLLQVNAFRQAVPELAGLRTVCILDGIPISLGRDLDTLGAAALSIGKNNVTPDIVADCQRRGVQVWVWTVNSLHSMERLLKMGVDGICSDYPERV 528
+ TL+E+ ++ V + ++LK A PV ++ V + WT + +V +F +L + N PE+ + ++ GIPIS + +GA ++++ + + + V D +RG++V+VWTVN + R+ +GVDG+ S++P+R+
Sbjct: 72 IPTLQEVFD---LIDKRVKVNIELKGVGTAEPVAQMIQDYVTNKSWTKDHFMVSSFNHHELKKFNKLN---PEI---KIGALISGIPISYAEFAEKIGAFSINLDIDFINQEFVDDAHQRGLKVYVWTVNDHDDIARMKALGVDGMFSNFPDRL 216
BLAST of mRNA_H-elongata_contig86705.16228.1 vs. uniprot
Match: A0A4S3K306_9GAMM (Glycerophosphoryl diester phosphodiesterase n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4S3K306_9GAMM) HSP 1 Score: 83.2 bits (204), Expect = 3.400e-15 Identity = 47/155 (30.32%), Postives = 81/155 (52.26%), Query Frame = 1
Query: 67 VSTLEEMLQERAIVRSAVHLYVDLKHTEVARPVLHVLWKAVEHWGWTSERLLVGAFRQLDLLQVNAFRQAVPELAGLRTVCILDGIPISLGRDLDTLGAAALSIGKNNVTPDIVADCQRRGVQVWVWTVNSLHSMERLLKMGVDGICSDYPERVI 531
+ TL E+L+ +V + L V++K + + H GW++++ LV +F +L + F+QA PE+ VC G+P+ LGA AL++ + V ++ D RG++++ +TVN M L G+DG+ SDYP+RV+
Sbjct: 86 IPTLHEVLR---LVEGRIPLNVEIKSAGGTGARIAAALRDAMHEGWSADQFLVSSFHLPELYE---FKQAAPEIPIAALVC---GVPLDWAACATELGAQALNVSEEFVDSRLIEDAHSRGLKIYAYTVNHPDDMSLLRDAGIDGVFSDYPDRVL 231 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86705.16228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig86705.16228.1 >prot_H-elongata_contig86705.16228.1 ID=prot_H-elongata_contig86705.16228.1|Name=mRNA_H-elongata_contig86705.16228.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp KNTGEWIENLTLAQTRERLKHGVSTLEEMLQERAIVRSAVHLYVDLKHTEback to top mRNA from alignment at H-elongata_contig86705:675..2691- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig86705.16228.1 ID=mRNA_H-elongata_contig86705.16228.1|Name=mRNA_H-elongata_contig86705.16228.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2017bp|location=Sequence derived from alignment at H-elongata_contig86705:675..2691- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig86705:675..2691- >mRNA_H-elongata_contig86705.16228.1 ID=mRNA_H-elongata_contig86705.16228.1|Name=mRNA_H-elongata_contig86705.16228.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig86705:675..2691- (Himanthalia elongata Himel1 dioecious)back to top |