mRNA_H-elongata_contig86689.16227.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86689.16227.1
Unique NamemRNA_H-elongata_contig86689.16227.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86689.16227.1 vs. uniprot
Match: A0A6H5JWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT4_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.340e-17
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    7 SPHEVFFGGRPPMPILPFCKPAYHRVPRRTKMDHQARPCFFLNFGYNHGGDCIKIMDEETGRVVHSRDVTW 219
            SPHE+F G + P  +LPF +P + R  RRTK+D QA PC++LN G NH    +K++   TGRVV++ +V+W
Sbjct:  363 SPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATPCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSW 433
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BLAST of mRNA_H-elongata_contig86689.16227.1 vs. uniprot
Match: A0A6H5L0J9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J9_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.230e-15
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    7 SPHEVFFGGRPPMPILPFCKPAYHRVPRRTKMDHQARPCFFLNFGYNHGGDCIKIMDEETGRVVHSRDVTW 219
            SPHE+  G + P  +LPF +P + R  RRTK+D QA  C++LN G NH    +K++ E TGRV ++ +V+W
Sbjct:  151 SPHEMLTGEQGPFRLLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLQESTGRVAYTNNVSW 221
[Close]
BLAST of mRNA_H-elongata_contig86689.16227.1 vs. uniprot
Match: A0A6H5JEQ0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEQ0_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.950e-13
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    7 SPHEVFFGGRPPMPILPFCKPAYHRVPRRTKMDHQARPCFFLNFGYNHGGDCIKIMDEETGRVVHSRDVT 216
            SPHE+F G + P  +LP  +P + R  RRTK+D QA P ++LN G NH    +K++   T RVVH+ +V+
Sbjct:  311 SPHEMFTGEQGPFRVLPLFQPGFMREDRRTKLDDQATPLYYLNGGDNHPNGTVKVLKASTNRVVHTNNVS 380
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86689.16227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWT4_9PHAE4.340e-1747.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L0J9_9PHAE3.230e-1545.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JEQ0_9PHAE1.950e-1344.29Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86689contigH-elongata_contig86689:1..243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size244
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931268.0770307-CDS-H-elongata_contig86689:0..2431622931268.0770307-CDS-H-elongata_contig86689:0..243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86689 1..243 +
1691679766.7015278-CDS-H-elongata_contig86689:0..2431691679766.7015278-CDS-H-elongata_contig86689:0..243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86689 1..243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86689.16227.1prot_H-elongata_contig86689.16227.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86689 1..243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86689.16227.1

>prot_H-elongata_contig86689.16227.1 ID=prot_H-elongata_contig86689.16227.1|Name=mRNA_H-elongata_contig86689.16227.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MLSPHEVFFGGRPPMPILPFCKPAYHRVPRRTKMDHQARPCFFLNFGYNH
GGDCIKIMDEETGRVVHSRDVTWQKPREPFT
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mRNA from alignment at H-elongata_contig86689:1..243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86689.16227.1 ID=mRNA_H-elongata_contig86689.16227.1|Name=mRNA_H-elongata_contig86689.16227.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig86689:1..243+ (Himanthalia elongata Himel1 dioecious)
ATGCTTTCCCCGCACGAAGTATTCTTCGGGGGTCGCCCGCCAATGCCGAT
CTTGCCGTTTTGTAAGCCGGCGTACCATCGTGTTCCGCGGCGAACTAAAA
TGGACCATCAGGCGCGCCCGTGTTTTTTCCTAAATTTTGGATATAATCAT
GGAGGCGACTGCATAAAAATAATGGACGAGGAGACGGGTCGGGTCGTGCA
CTCGCGCGACGTGACATGGCAAAAACCGCGGGAGCCGTTCACT
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Coding sequence (CDS) from alignment at H-elongata_contig86689:1..243+

>mRNA_H-elongata_contig86689.16227.1 ID=mRNA_H-elongata_contig86689.16227.1|Name=mRNA_H-elongata_contig86689.16227.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig86689:1..243+ (Himanthalia elongata Himel1 dioecious)
ATGCTTTCCCCGCACGAAGTATTCTTCGGGGGTCGCCCGCCAATGCCGAT
CTTGCCGTTTTGTAAGCCGGCGTACCATCGTGTTCCGCGGCGAACTAAAA
TGGACCATCAGGCGCGCCCGTGTTTTTTCCTAAATTTTGGATATAATCAT
GGAGGCGACTGCATAAAAATAATGGACGAGGAGACGGGTCGGGTCGTGCA
CTCGCGCGACGTGACATGGCAAAAACCGCGGGAGCCGTTCACTATGCTTT
CCCCGCACGAAGTATTCTTCGGGGGTCGCCCGCCAATGCCGATCTTGCCG
TTTTGTAAGCCGGCGTACCATCGTGTTCCGCGGCGAACTAAAATGGACCA
TCAGGCGCGCCCGTGTTTTTTCCTAAATTTTGGATATAATCATGGAGGCG
ACTGCATAAAAATAATGGACGAGGAGACGGGTCGGGTCGTGCACTCGCGC
GACGTGACATGGCAAAAACCGCGGGAGCCGTTCACT
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