mRNA_H-elongata_contig86683.16226.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86683.16226.1
Unique NamemRNA_H-elongata_contig86683.16226.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86683.16226.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 8.220e-61
Identity = 113/159 (71.07%), Postives = 133/159 (83.65%), Query Frame = 2 
Query:    2 LIVPSPGLPEGAQLRVRAAPEATAPEVGQVSAAPGTVFEAAEEAEDWVRVLMGEEASAWMSSSAQGMSLLQRAQRHVFVMNPELVAQHGDAVKLVVRSAPSQEGTPLGELTCRGRVNCVGARGPWLRVLYQGFREAWMLSQTDT-LQLLVPASSSDGDG 475
            L+VP+PGLP+G QLRVRAAPE TA EV QVSAAPGT+FE AE++ +W+RVLMG+ ASAWMSSSAQGM LL+ A+R VF+M+P L A+HGDAVKL VR+APSQ+G PLGE+T +GRV C+  RGPWLRVLY G REAWMLSQT T +QLLVPA S  G G
Sbjct:  165 LVVPAPGLPDGVQLRVRAAPEGTAAEVKQVSAAPGTIFEVAEQSAEWLRVLMGDAASAWMSSSAQGMPLLKPARRDVFIMDPALAAKHGDAVKLAVRAAPSQDGAPLGEITSKGRVYCLATRGPWLRVLYHGHREAWMLSQTPTEVQLLVPADSVAGGG 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86683.16226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7L6_ECTSI8.220e-6171.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86683contigH-elongata_contig86683:101..2702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1087
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86683.16226.1prot_H-elongata_contig86683.16226.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86683 531..2064 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931267.893988-UTR-H-elongata_contig86683:100..1791622931267.893988-UTR-H-elongata_contig86683:100..179Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86683 101..179 +
1691679766.6091328-UTR-H-elongata_contig86683:100..1791691679766.6091328-UTR-H-elongata_contig86683:100..179Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86683 101..179 +
1622931267.9142427-UTR-H-elongata_contig86683:455..5301622931267.9142427-UTR-H-elongata_contig86683:455..530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86683 456..530 +
1691679766.6178844-UTR-H-elongata_contig86683:455..5301691679766.6178844-UTR-H-elongata_contig86683:455..530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86683 456..530 +
1622931267.9830043-UTR-H-elongata_contig86683:2064..22911622931267.9830043-UTR-H-elongata_contig86683:2064..2291Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86683 2065..2291 +
1691679766.6615484-UTR-H-elongata_contig86683:2064..22911691679766.6615484-UTR-H-elongata_contig86683:2064..2291Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86683 2065..2291 +
1622931267.9997184-UTR-H-elongata_contig86683:2363..24411622931267.9997184-UTR-H-elongata_contig86683:2363..2441Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86683 2364..2441 +
1691679766.6711204-UTR-H-elongata_contig86683:2363..24411691679766.6711204-UTR-H-elongata_contig86683:2363..2441Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86683 2364..2441 +
1622931268.0140526-UTR-H-elongata_contig86683:2479..27021622931268.0140526-UTR-H-elongata_contig86683:2479..2702Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86683 2480..2702 +
1691679766.682765-UTR-H-elongata_contig86683:2479..27021691679766.682765-UTR-H-elongata_contig86683:2479..2702Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86683 2480..2702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931267.9351141-CDS-H-elongata_contig86683:530..6261622931267.9351141-CDS-H-elongata_contig86683:530..626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86683 531..626 +
1691679766.630864-CDS-H-elongata_contig86683:530..6261691679766.630864-CDS-H-elongata_contig86683:530..626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86683 531..626 +
1622931267.9521854-CDS-H-elongata_contig86683:1114..12671622931267.9521854-CDS-H-elongata_contig86683:1114..1267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86683 1115..1267 +
1691679766.6419072-CDS-H-elongata_contig86683:1114..12671691679766.6419072-CDS-H-elongata_contig86683:1114..1267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86683 1115..1267 +
1622931267.9682462-CDS-H-elongata_contig86683:1908..20641622931267.9682462-CDS-H-elongata_contig86683:1908..2064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86683 1909..2064 +
1691679766.652254-CDS-H-elongata_contig86683:1908..20641691679766.652254-CDS-H-elongata_contig86683:1908..2064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86683 1909..2064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86683.16226.1

>prot_H-elongata_contig86683.16226.1 ID=prot_H-elongata_contig86683.16226.1|Name=mRNA_H-elongata_contig86683.16226.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MGEEASAWMSSSAQGMSLLQRAQRHVFVMNPELVAQHGDAVKLVVRSAPS
QEGTPLGELTCRGRVNCVGARGPWLRVLYQGFREAWMLSQTDTLQLLVPA
SSSDGDGPSPVNFEERTQAPPEESAMALQGDGNR*
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mRNA from alignment at H-elongata_contig86683:101..2702+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86683.16226.1 ID=mRNA_H-elongata_contig86683.16226.1|Name=mRNA_H-elongata_contig86683.16226.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2602bp|location=Sequence derived from alignment at H-elongata_contig86683:101..2702+ (Himanthalia elongata Himel1 dioecious)
GCTAATCGTTCCCTCCCCGGGGTTGCCGGAGGGTGCACAGCTGAGGGTTA
GAGCCGCGCCGGAGGCGACAGCTCCCGAGGCGAGCTAATAATCTGATACT
TCGTATATTTATCTTTTTTTACTATCGGATTCTTATTTCGGCTGCTTAAA
CGGTGGATTTGTTTATCAAAACTTTTCGCTCTCATCGTGCACCTCCGGTC
AAGGGTCAGGAGGGGTCAAAGAGAGTTAAGATCTCGGGCTTCATCGTTGC
GCCGATCCTCAATGGCTTATGGCCTCCGATTCCCTCCTCCACCTAACTCG
CTGCTCGCGTCGGCGTTCGGCGTTCGGCGTTCTCCCCTTTGGGATGAGAT
CACAGGTGGGCCAGGTATCGGCAGCGCCTGGCACTGTTTTCGAGGCGGCC
GAGGAAGCAGAGGATTGGGTAAGGGTCTTAATGGGGGAGGAGGCGTCGGC
ATGGATGTCTTCTTCGGCCCAGGGGATGTCCCTTCTTCAACGGGCGCAGC
GTCATGTTTTTGTTATGAACCCTGAGGTGCGTTATCGATGAATAATATGA
TTTTTTGAAAGGTGGTTTAAGGCAGAAGGTTAACCATGGAAGGCGTTTTC
GGGTGTCGGTTACCTGTGCAAGCCCGTTATTGGTGGTGTTCTGTGCTTGA
CTGTAGACCATATCACGGTAATGATTTGTCTCCATTTTGGTGGTATGGCG
CTGCATACCATGAAGGGTAAAGCACCTATGGGTAAAGCCCAAGGAAGAAA
ATCCACTTCACATTCTCTCTTTATCCTCGCGGTCTCTGCTCTCCTGACGT
GGTTCCGCTTTAGTGCACGTCGAGCTCGTACTTAAGATCCTTCTCTGGCC
GTGACTCGGACCTCTCGCTCCCCCTAGCCACGTGCGGCAGAGGGTACAGT
TAGCTAGAGTGTATCGAGCTCTCCTGCTGGACCACTGTCCCCCAGATAGA
ACTCTTGCTTAAACAGCTCACCATCGAAAATGCTATTTATTCCCTGTGTT
TTTTGGTTATCCAGCTCGTCGCCCAGCACGGAGACGCGGTGAAACTCGTA
GTACGGAGCGCCCCGTCTCAAGAGGGGACCCCTTTGGGGGAGCTCACCTG
CAGGGGACGAGTGAACTGCGTGGGTGCACGAGGCCCTTGGTTGAGGGTGC
TGTACCAAGGTTTTCGGGTGAGGAGGCGTTTTAGTTCGTCGATGTCGGTG
TCGTAAACATTGTTTTGTGCACAGGCGTGTCCCTGGAGAGGTTGATGAAA
AACCAACCCTCAAAGCTAAAAATAGCTAATAAAATAGCCTGACTATAGTT
GGTCCCCCGGACTACACCTCTCATGGTGCTTGCTAAGATGGCGTGGATAT
TCGGCGGGTTTAAAAAAAAAAATCGCCAACATTACGGTTAAATAAAGCCG
TTTTGGGGGGAAGTGTAAAATGTAACCGCCACGTTCTCTGAGATACATAT
AGCAGCATTGTTTCCTACGCTGTCCATATTCTTTTTGGTTTTAGGTTTTT
GTTTCCTTACAATGTTTTTTTGCTTGAAGTGGATGACCCTCTTAACTCTT
TTTCTTCCTTCCCTTCAGATTAAAAATAATCTAAAGATGCTGGTTTTACT
GTCAACTCCCCTCTAGGTTGGGCCATAATATGCTTATGACGATTTTGTCC
TTTAATGTAGTATAAAAATGTCGACATATGTTCGAACCTGACGATAGTTG
GTCCCCTGGCTCATTGTGCTAAGCAAGGCGTGGATGTTCAAAGGGTTCTA
ATGATTTCATATGTTTTAAATAATAATTTTGTCCATCTCCTCGCCGTTCG
GCTTGCAGGAGGCGTGGATGCTTTCCCAGACCGACACGTTACAGCTACTA
GTCCCGGCCTCCTCCAGCGATGGCGACGGCCCCTCTCCTGTTAACTTCGA
GGAGCGGACCCAAGCCCCGCCGGAAGAGTCCGCCATGGCACTCCAAGGAG
ACGGAAATCGGTGAGTTGAGGTGCAGGGGAGACTAAGGTATCAAGATGGC
GTTAACCCTTTCGGAACTGGATTTCAAGTTTTATATTGAATTTAGAATGT
AAAAAACAGATGGAGTTCCAAATGGTTAAGGCGTTTTCGCTTCGTTAATA
GGGGGGTATCCATTCATTTTTCTCCTCAATCAAGTGTTTATGGAGTTCTA
GCTTAAGGACGGCTTTCGTCTCGGGTATGGATCCGGTCGTGGCGTGTATA
CCTCGTTCGCTCTTCGGGGCGGGGGGGGAAATTACACAGAGAATTAGAGA
ACGGCCGGGCTAGTCTTGAGAGTTAGCAAATGTGCGTAAAAGTTACCCCG
AGGACAAAAAATTATTTCGTTTGACTCTGTATAAAGGGCAAGATAACAAA
CATATATATATACATATATTACATTGTATAATAATGGCCCCAAAAACCCG
GGGTAAATAACAGGTAATTTATTCCGTATCTAAATATCCACCTAACTGGT
ACAACCGCCTAAAGAAGACTTCATTGAACCCCCTATGAACTATTAAAACA
GCTTAGCCAACACTGGCTGCTGCGTTTGTGGCACAAGTAAAGGCATAGAA
GGCAAGTACGGGAGAAAATATCACAAAAAGTAAAGGTTACGCTAGAGGCA
TA
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Coding sequence (CDS) from alignment at H-elongata_contig86683:101..2702+

>mRNA_H-elongata_contig86683.16226.1 ID=mRNA_H-elongata_contig86683.16226.1|Name=mRNA_H-elongata_contig86683.16226.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig86683:101..2702+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGAGGAGGCGTCGGCATGGATGTCTTCTTCGGCCCAGGGGATGTC
CCTTCTTCAACGGGCGCAGCGTCATGTTTTTGTTATGAACCCTGAGATGG
GGGAGGAGGCGTCGGCATGGATGTCTTCTTCGGCCCAGGGGATGTCCCTT
CTTCAACGGGCGCAGCGTCATGTTTTTGTTATGAACCCTGAGCTCGTCGC
CCAGCACGGAGACGCGGTGAAACTCGTAGTACGGAGCGCCCCGTCTCAAG
AGGGGACCCCTTTGGGGGAGCTCACCTGCAGGGGACGAGTGAACTGCGTG
GGTGCACGAGGCCCTTGGTTGAGGGTGCTGTACCAAGGTTTTCGGCTCGT
CGCCCAGCACGGAGACGCGGTGAAACTCGTAGTACGGAGCGCCCCGTCTC
AAGAGGGGACCCCTTTGGGGGAGCTCACCTGCAGGGGACGAGTGAACTGC
GTGGGTGCACGAGGCCCTTGGTTGAGGGTGCTGTACCAAGGTTTTCGGGA
GGCGTGGATGCTTTCCCAGACCGACACGTTACAGCTACTAGTCCCGGCCT
CCTCCAGCGATGGCGACGGCCCCTCTCCTGTTAACTTCGAGGAGCGGACC
CAAGCCCCGCCGGAAGAGTCCGCCATGGCACTCCAAGGAGACGGAAATCG
GTGAGAGGCGTGGATGCTTTCCCAGACCGACACGTTACAGCTACTAGTCC
CGGCCTCCTCCAGCGATGGCGACGGCCCCTCTCCTGTTAACTTCGAGGAG
CGGACCCAAGCCCCGCCGGAAGAGTCCGCCATGGCACTCCAAGGAGACGG
AAATCGGTGA
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