mRNA_H-elongata_contig86666.16224.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86666.16224.1
Unique NamemRNA_H-elongata_contig86666.16224.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig86666.16224.1 vs. uniprot
Match: A0A6H5JUD9_9PHAE (Methionine synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUD9_9PHAE)

HSP 1 Score: 466 bits (1199), Expect = 1.220e-158
Identity = 229/264 (86.74%), Postives = 243/264 (92.05%), Query Frame = 1
Query:    7 IFKDVEDPSFRNVTFDELVTAYKDQTKGLIDGGSDIIIVETIFDTLNAKAAVFAVREYLDEHDLTDIPLFVSGTLVDQSGRTLSGQTTEGFYVSMRHCRPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEELINMLGGCCGSTPAHIKA-----------MKEAIAHCSTRALPPPREPFMWLSGLEDLVVTKERFQFLNVGERCNVAGSIRFKKLILSGDYQTAMDVAKKQV 765
            I  DVEDPSFRNVTFDELV AYKDQTKGLIDGG+DIIIVETIFDTLNAKAAVFAVREY +E  +TD+PLFVSGTLVDQSGRTLSGQTTEGFYVSMRHC+PFC+GLNCALGA+QMRPFLQRLA+VAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFA+E LINMLGGCCGSTPAHIKA           MK+A+  CSTRALPPPREPFMWLSGLEDL+VTKERFQFLNVGERCNV+GSIRFKKLIL GDYQTAMDVAK+QV
Sbjct:  184 ISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGGADIIIVETIFDTLNAKAAVFAVREYFEEQGITDVPLFVSGTLVDQSGRTLSGQTTEGFYVSMRHCKPFCVGLNCALGASQMRPFLQRLAQVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAQEGLINMLGGCCGSTPAHIKARRKGRAEKKRAMKDAVEPCSTRALPPPREPFMWLSGLEDLIVTKERFQFLNVGERCNVSGSIRFKKLILKGDYQTAMDVAKQQV 447          
BLAST of mRNA_H-elongata_contig86666.16224.1 vs. uniprot
Match: D7FUT0_ECTSI (Methionine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT0_ECTSI)

HSP 1 Score: 476 bits (1225), Expect = 8.280e-157
Identity = 230/253 (90.91%), Postives = 242/253 (95.65%), Query Frame = 1
Query:    7 IFKDVEDPSFRNVTFDELVTAYKDQTKGLIDGGSDIIIVETIFDTLNAKAAVFAVREYLDEHDLTDIPLFVSGTLVDQSGRTLSGQTTEGFYVSMRHCRPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEELINMLGGCCGSTPAHIKAMKEAIAHCSTRALPPPREPFMWLSGLEDLVVTKERFQFLNVGERCNVAGSIRFKKLILSGDYQTAMDVAKKQV 765
            I  DVEDPSFRNVTFDELV AYKDQTKGLIDGG+DIIIVETIFDTLNAKA VFAVREY DE  +TD+PLFVSGTLVDQSGRTLSGQTTEGFYVSMRHC+PFC+GLNCALGA+QMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYD+TPEDMARDNLLFAEE LINMLGGCCGSTPAHIKAMK+A+  CSTRALPPPREPFMWLSGLEDL+VTKERFQFLNVGERCNV+GSIRFKKLIL GDYQTAMDVAK+QV
Sbjct:  102 ISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGGADIIIVETIFDTLNAKAGVFAVREYFDEQGITDVPLFVSGTLVDQSGRTLSGQTTEGFYVSMRHCKPFCIGLNCALGASQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDETPEDMARDNLLFAEEGLINMLGGCCGSTPAHIKAMKDAVEPCSTRALPPPREPFMWLSGLEDLIVTKERFQFLNVGERCNVSGSIRFKKLILKGDYQTAMDVAKQQV 354          
BLAST of mRNA_H-elongata_contig86666.16224.1 vs. uniprot
Match: A0A7S2XWE9_9STRA (Methionine synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWE9_9STRA)

HSP 1 Score: 408 bits (1049), Expect = 1.530e-130
Identity = 194/253 (76.68%), Postives = 223/253 (88.14%), Query Frame = 1
Query:    7 IFKDVEDPSFRNVTFDELVTAYKDQTKGLIDGGSDIIIVETIFDTLNAKAAVFAVREYLDEHDLTDIPLFVSGTLVDQSGRTLSGQTTEGFYVSMRHCRPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEELINMLGGCCGSTPAHIKAMKEAIAHCSTRALPPPREPFMWLSGLEDLVVTKERFQFLNVGERCNVAGSIRFKKLILSGDYQTAMDVAKKQV 765
            I  +VEDPS RNVTFDEL  AY +Q  GL++GG DI++VETIFDTLNAKAAVFA   +L+EH L D+PLFVSGTLVDQSGRTLSGQTTE FYVS+RHC+PFC+GLNCALGATQM+PFL+RLA VAECFVHVYSNAGLPNAMGGYDDTP+DMAR+NL+FA+E+L+NM+GGCCGSTP HIKA+ EA+     R LP  +EP +WLSGLEDLVV+K+RF FLNVGERCN+AGSIRFKKLIL GDY TAMD+AKKQV
Sbjct:  165 ISPNVEDPSVRNVTFDELEIAYYEQVCGLVEGGCDILMVETIFDTLNAKAAVFACNRFLEEHGLEDMPLFVSGTLVDQSGRTLSGQTTEAFYVSIRHCKPFCVGLNCALGATQMKPFLRRLAVVAECFVHVYSNAGLPNAMGGYDDTPDDMARENLIFADEKLVNMIGGCCGSTPPHIKAISEAVKGMPPRPLPEKKEPVLWLSGLEDLVVSKDRFTFLNVGERCNIAGSIRFKKLILGGDYATAMDIAKKQV 417          
BLAST of mRNA_H-elongata_contig86666.16224.1 vs. uniprot
Match: H3HA59_PHYRM (Methionine synthase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA59_PHYRM)

HSP 1 Score: 365 bits (938), Expect = 1.270e-120
Identity = 178/253 (70.36%), Postives = 209/253 (82.61%), Query Frame = 1
Query:    7 IFKDVEDPSFRNVTFDELVTAYKDQTKGLIDGGSDIIIVETIFDTLNAKAAVFAVREYLDEHDLTDIPLFVSGTLVDQSGRTLSGQTTEGFYVSMRHCRPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEELINMLGGCCGSTPAHIKAMKEAIAHCSTRALPPPREPFMWLSGLEDLVVTKERFQFLNVGERCNVAGSIRFKKLILSGDYQTAMDVAKKQV 765
            I  +VEDP FRNVTFDELV AY  Q +GL+DGGSD+++VETIFDTLNAKAAVFA+ +Y  E     +PLF+SGT+VD SGRTLSGQTTE FYVS+RH +PFC+GLNCALGA QM+PFLQRLA VAECFV VY+NAGLPNAMGGYDDTP  MA     F+++ LINM+GGCCG+TP HI+A+    A    R LP  +EPFMWLSGLED+VVTKERF FLNVGERCN++GSIRFK+LI+ GDY TAMDVA++QV
Sbjct:  163 ISPNVEDPGFRNVTFDELVDAYYTQVEGLVDGGSDVLLVETIFDTLNAKAAVFAINKY-QETTGRKLPLFISGTIVDMSGRTLSGQTTEAFYVSLRHSKPFCIGLNCALGANQMKPFLQRLANVAECFVSVYANAGLPNAMGGYDDTPAMMAEYCEEFSKDRLINMMGGCCGTTPQHIEAIAIMAAKYEPRPLPELKEPFMWLSGLEDMVVTKERFSFLNVGERCNISGSIRFKRLIMKGDYGTAMDVARQQV 414          
BLAST of mRNA_H-elongata_contig86666.16224.1 vs. uniprot
Match: A0A836CPG7_9STRA (Methionine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG7_9STRA)

HSP 1 Score: 381 bits (978), Expect = 3.180e-120
Identity = 186/250 (74.40%), Postives = 212/250 (84.80%), Query Frame = 1
Query:   19 VEDPSFRNVTFDELVTAYKDQTKGLIDGGSDIIIVETIFDTLNAKAAVFAVREYLDEHDLTDIPLFVSGTLVDQSGRTLSGQTTEGFYVSMRHCRPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEELINMLGGCCGSTPAHIKAMKEAIAHCSTRALPPPREP-FMWLSGLEDLVVTKERFQFLNVGERCNVAGSIRFKKLILSGDYQTAMDVAKKQV 765
            VEDPS+RNV FDELV AY  + K L++GGSDIIIVETIFDTLNAKAAVFAVR+YL E +  DIPL +SGTLVDQSGRTLSGQT EGFYVSMRH +PFC+GLNCALGA QM+PFL+RL+ VAECFVHVYSNAGLPNAMGGYDDTP DMARDN  FA E ++NM+GGCCGSTP HIKAM E +  C+ R LP P +P  MWLSGLE L V+K+R  FLNVGERCN +GSI+FKKLI++G+Y +AMDVAK QV
Sbjct:  170 VEDPSYRNVNFDELVDAYYFEAKALVEGGSDIIIVETIFDTLNAKAAVFAVRKYLRETNQEDIPLMISGTLVDQSGRTLSGQTGEGFYVSMRHVKPFCIGLNCALGAQQMKPFLRRLSMVAECFVHVYSNAGLPNAMGGYDDTPSDMARDNHEFASEGMVNMIGGCCGSTPQHIKAMHEDVKDCAPRPLPKPLDPPVMWLSGLEPLQVSKDRINFLNVGERCNCSGSIQFKKLIMAGNYSSAMDVAKAQV 419          
BLAST of mRNA_H-elongata_contig86666.16224.1 vs. uniprot
Match: A0A7S1UDH7_9STRA (Methionine synthase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDH7_9STRA)

HSP 1 Score: 376 bits (966), Expect = 2.940e-119
Identity = 183/254 (72.05%), Postives = 212/254 (83.46%), Query Frame = 1
Query:    7 IFKDVEDPSFRNVTFDELVTAYKDQTKGLIDGGSDIIIVETIFDTLNAKAAVFAVREYLDEHDLTDIPLFVSGTLVDQSGRTLSGQTTEGFYVSMRHCRPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEELINMLGGCCGSTPAHIKAMKEAIAHCSTRALPPPREPF-MWLSGLEDLVVTKERFQFLNVGERCNVAGSIRFKKLILSGDYQTAMDVAKKQV 765
            I  DVEDPS RN  FDELV AY DQ K L+DGGSD ++VETIFDTLNAKAA+FA+  YLDE    D+P+FVSGTLVDQSGRTLSGQT E FYVS+RH +PFC+GLNCALGA QM+PFL+RL+ VAECFVHVY+NAGLPNAMGGYDDTPEDMAR+NL+FA E LINM+GGCCGSTP HI A+ EA+A    R L    +   +WLSGLEDLVV+KERFQF+N+GERCN+AGS +FK+LI+ GDY +AMDVAK QV
Sbjct:   52 ISPDVEDPSCRNCDFDELVKAYYDQAKALMDGGSDALMVETIFDTLNAKAALFAIDNYLDEIYPRDVPVFVSGTLVDQSGRTLSGQTNEAFYVSIRHAKPFCVGLNCALGADQMKPFLRRLSNVAECFVHVYANAGLPNAMGGYDDTPEDMARENLIFANERLINMIGGCCGSTPPHIAAIAEAVASHEPRVLKGKNDKMELWLSGLEDLVVSKERFQFMNIGERCNLAGSAKFKRLIMGGDYGSAMDVAKAQV 305          
BLAST of mRNA_H-elongata_contig86666.16224.1 vs. uniprot
Match: A0A8K1C6F4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6F4_PYTOL)

HSP 1 Score: 371 bits (953), Expect = 1.370e-116
Identity = 178/253 (70.36%), Postives = 213/253 (84.19%), Query Frame = 1
Query:    7 IFKDVEDPSFRNVTFDELVTAYKDQTKGLIDGGSDIIIVETIFDTLNAKAAVFAVREYLDEHDLTDIPLFVSGTLVDQSGRTLSGQTTEGFYVSMRHCRPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEELINMLGGCCGSTPAHIKAMKEAIAHCSTRALPPPREPFMWLSGLEDLVVTKERFQFLNVGERCNVAGSIRFKKLILSGDYQTAMDVAKKQV 765
            I  +VEDP FRNVTFDELV AY  Q +GL+DGGSDI++VETIFDTLNAKAAV+A+ +Y  E+    +PLF+SGT+VD SGRTLSGQTTE FYVS+RH +PFC+GLNCALGA QM+PFLQRL+ VAECFV VY+NAGLPNAMGGYDD+P+ MA     F ++ LINM+GGCCG+TP HI+AM E   + + R LPP ++PFMWLSGLEDLVVTKERF FLN+GERCN++GSIRFKKLIL GDY TAMD+A++QV
Sbjct:  165 ISPNVEDPGFRNVTFDELVAAYYQQVEGLVDGGSDILLVETIFDTLNAKAAVYAIDQY-QENTGRRLPLFISGTIVDMSGRTLSGQTTEAFYVSLRHSKPFCIGLNCALGANQMKPFLQRLSNVAECFVSVYANAGLPNAMGGYDDSPQLMADHCEEFCKDYLINMMGGCCGTTPKHIRAMAEMTMNYTARPLPPLKDPFMWLSGLEDLVVTKERFSFLNIGERCNISGSIRFKKLILKGDYGTAMDIARQQV 416          
BLAST of mRNA_H-elongata_contig86666.16224.1 vs. uniprot
Match: K3WL46_GLOUD (Methionine synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL46_GLOUD)

HSP 1 Score: 371 bits (953), Expect = 1.420e-116
Identity = 180/253 (71.15%), Postives = 211/253 (83.40%), Query Frame = 1
Query:    7 IFKDVEDPSFRNVTFDELVTAYKDQTKGLIDGGSDIIIVETIFDTLNAKAAVFAVREYLDEHDLTDIPLFVSGTLVDQSGRTLSGQTTEGFYVSMRHCRPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEELINMLGGCCGSTPAHIKAMKEAIAHCSTRALPPPREPFMWLSGLEDLVVTKERFQFLNVGERCNVAGSIRFKKLILSGDYQTAMDVAKKQV 765
            I  +VEDP FRNVTFDELV AY  Q +GL+DGGSDI++VETIFDTLNAKAAV+AV  Y  E     +PLF+SGT+VD SGRTLSGQTTE FYVS+RH +PFC+GLNCALGA QM+PFLQRL+ VAECFV VY+NAGLPNAMGGYDD P  MA     F +++LINM+GGCCG+TPAHIKA+ +     + R LPPP++PFMWLSGLEDLVVTKERF FLNVGERCN++GSIRFKKLI+ GDY TAMD+A++QV
Sbjct:  168 ISPNVEDPGFRNVTFDELVEAYYTQIEGLVDGGSDILLVETIFDTLNAKAAVYAVDVY-QEKTGKKLPLFISGTIVDMSGRTLSGQTTEAFYVSLRHSKPFCIGLNCALGANQMKPFLQRLSNVAECFVSVYANAGLPNAMGGYDDGPALMAEYCEEFCKDQLINMMGGCCGTTPAHIKAIADVCGKYAPRPLPPPKDPFMWLSGLEDLVVTKERFSFLNVGERCNISGSIRFKKLIMKGDYGTAMDIARQQV 419          
BLAST of mRNA_H-elongata_contig86666.16224.1 vs. uniprot
Match: A0A2D4BEJ2_PYTIN (Methionine synthase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEJ2_PYTIN)

HSP 1 Score: 369 bits (946), Expect = 7.710e-116
Identity = 179/253 (70.75%), Postives = 210/253 (83.00%), Query Frame = 1
Query:    7 IFKDVEDPSFRNVTFDELVTAYKDQTKGLIDGGSDIIIVETIFDTLNAKAAVFAVREYLDEHDLTDIPLFVSGTLVDQSGRTLSGQTTEGFYVSMRHCRPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEELINMLGGCCGSTPAHIKAMKEAIAHCSTRALPPPREPFMWLSGLEDLVVTKERFQFLNVGERCNVAGSIRFKKLILSGDYQTAMDVAKKQV 765
            I  +VEDP FRNVTFDELV AY  Q +GL+DGGSD+++VETIFDTLNAKAAVFA+ +Y  E     +PLF+SGT+VD SGRTLSGQTTE FYVS+RH +PFC+GLNCALGA QM+PFLQRLA VAECFV VY+NAGLPNAMGGYDD P  MA+    F E++LINM+GGCCG+TP HI+A+ +     + R LP P+ PFMWLSGLEDLVVTKERF FLNVGERCN++GSIRFKKLIL GDY TAMD+A++QV
Sbjct:  145 ISPNVEDPGFRNVTFDELVDAYYTQVEGLVDGGSDVLLVETIFDTLNAKAAVFAIDKY-QEATGRRLPLFISGTIVDMSGRTLSGQTTEAFYVSLRHSKPFCIGLNCALGANQMKPFLQRLANVAECFVSVYANAGLPNAMGGYDDNPVLMAKYCEEFCEDKLINMIGGCCGTTPVHIRAIADMTERHAPRPLPSPQAPFMWLSGLEDLVVTKERFSFLNVGERCNISGSIRFKKLILKGDYGTAMDIARQQV 396          
BLAST of mRNA_H-elongata_contig86666.16224.1 vs. uniprot
Match: A0A7S4DBJ3_HETAK (Methionine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBJ3_HETAK)

HSP 1 Score: 369 bits (947), Expect = 9.850e-116
Identity = 178/249 (71.49%), Postives = 204/249 (81.93%), Query Frame = 1
Query:   19 VEDPSFRNVTFDELVTAYKDQTKGLIDGGSDIIIVETIFDTLNAKAAVFAVREYLDEHDLTDIPLFVSGTLVDQSGRTLSGQTTEGFYVSMRHCRPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTPEDMARDNLLFAEEELINMLGGCCGSTPAHIKAMKEAIAHCSTRALPPPREPFMWLSGLEDLVVTKERFQFLNVGERCNVAGSIRFKKLILSGDYQTAMDVAKKQV 765
            VED S RNVTFDEL  AY  QT  L++GGSD+IIVETIFDTLNAKAA+FAV  Y +E   T+ PLF+SGTLVDQSGRTLSGQT E FY S+RH +PFC+GLNCALGA QM+PFL+RLA V ECFVHVYSNAGLPNAMGGYDDTPEDMAR+N +FA E L+NM+GGCCGSTP HI A+   +     R LP   EP MWLSGLEDL+V+K+RF FLNVGERCN+AGSI FKK I++GDY  AM++AKKQV
Sbjct:  172 VEDASQRNVTFDELEAAYYQQTVKLMEGGSDVIIVETIFDTLNAKAAIFAVNRYFEETGNTETPLFISGTLVDQSGRTLSGQTGEAFYASVRHAKPFCVGLNCALGAAQMKPFLRRLANVVECFVHVYSNAGLPNAMGGYDDTPEDMARENHIFASERLVNMIGGCCGSTPPHIAAIAADVEGMPPRELPTLGEPTMWLSGLEDLIVSKDRFSFLNVGERCNLAGSILFKKKIMAGDYMAAMEIAKKQV 420          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86666.16224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUD9_9PHAE1.220e-15886.74Methionine synthase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D7FUT0_ECTSI8.280e-15790.91Methionine synthase n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S2XWE9_9STRA1.530e-13076.68Methionine synthase n=1 Tax=Fibrocapsa japonica Ta... [more]
H3HA59_PHYRM1.270e-12070.36Methionine synthase n=1 Tax=Phytophthora ramorum T... [more]
A0A836CPG7_9STRA3.180e-12074.40Methionine synthase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S1UDH7_9STRA2.940e-11972.05Methionine synthase n=1 Tax=Phaeomonas parva TaxID... [more]
A0A8K1C6F4_PYTOL1.370e-11670.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WL46_GLOUD1.420e-11671.15Methionine synthase n=1 Tax=Globisporangium ultimu... [more]
A0A2D4BEJ2_PYTIN7.710e-11670.75Methionine synthase n=1 Tax=Pythium insidiosum Tax... [more]
A0A7S4DBJ3_HETAK9.850e-11671.49Methionine synthase n=1 Tax=Heterosigma akashiwo T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86666contigH-elongata_contig86666:236..2457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score476.9
Seed ortholog evalue6.2e-132
Seed eggNOG ortholog2880.D7FUT0
Preferred namemetH
KEGG rclassRC00035,RC00113,RC01241
KEGG koko:K00548
KEGG ReactionR00946,R09365
KEGG Pathwayko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230
KEGG ModuleM00017
EggNOG free text desc.betaine-homocysteine S-methyltransferase activity
EggNOG OGsCOG0646@1,KOG1579@2759
EC2.1.1.13
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMethionine synthase
Ec32 orthologEc-06_000970.1
Exons5
Model size780
Cds size780
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86666.16224.1prot_H-elongata_contig86666.16224.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86666 236..2457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931267.708549-CDS-H-elongata_contig86666:235..4111622931267.708549-CDS-H-elongata_contig86666:235..411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86666 236..411 +
1691679766.510571-CDS-H-elongata_contig86666:235..4111691679766.510571-CDS-H-elongata_contig86666:235..411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86666 236..411 +
1622931267.7234457-CDS-H-elongata_contig86666:753..8501622931267.7234457-CDS-H-elongata_contig86666:753..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86666 754..850 +
1691679766.5223722-CDS-H-elongata_contig86666:753..8501691679766.5223722-CDS-H-elongata_contig86666:753..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86666 754..850 +
1622931267.7377687-CDS-H-elongata_contig86666:1225..14951622931267.7377687-CDS-H-elongata_contig86666:1225..1495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86666 1226..1495 +
1691679766.531265-CDS-H-elongata_contig86666:1225..14951691679766.531265-CDS-H-elongata_contig86666:1225..1495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86666 1226..1495 +
1622931267.7575731-CDS-H-elongata_contig86666:1910..20441622931267.7575731-CDS-H-elongata_contig86666:1910..2044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86666 1911..2044 +
1691679766.540376-CDS-H-elongata_contig86666:1910..20441691679766.540376-CDS-H-elongata_contig86666:1910..2044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86666 1911..2044 +
1622931267.7697926-CDS-H-elongata_contig86666:2354..24571622931267.7697926-CDS-H-elongata_contig86666:2354..2457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86666 2355..2457 +
1691679766.5502021-CDS-H-elongata_contig86666:2354..24571691679766.5502021-CDS-H-elongata_contig86666:2354..2457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86666 2355..2457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86666.16224.1

>prot_H-elongata_contig86666.16224.1 ID=prot_H-elongata_contig86666.16224.1|Name=mRNA_H-elongata_contig86666.16224.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp
SDIFKDVEDPSFRNVTFDELVTAYKDQTKGLIDGGSDIIIVETIFDTLNA
KAAVFAVREYLDEHDLTDIPLFVSGTLVDQSGRTLSGQTTEGFYVSMRHC
RPFCLGLNCALGATQMRPFLQRLAKVAECFVHVYSNAGLPNAMGGYDDTP
EDMARDNLLFAEEELINMLGGCCGSTPAHIKAMKEAIAHCSTRALPPPRE
PFMWLSGLEDLVVTKERFQFLNVGERCNVAGSIRFKKLILSGDYQTAMDV
AKKQVTQHL*
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mRNA from alignment at H-elongata_contig86666:236..2457+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86666.16224.1 ID=mRNA_H-elongata_contig86666.16224.1|Name=mRNA_H-elongata_contig86666.16224.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2222bp|location=Sequence derived from alignment at H-elongata_contig86666:236..2457+ (Himanthalia elongata Himel1 dioecious)
TCTGACATTTTCAAGGACGTGGAGGACCCGTCATTCCGAAACGTGACATT TGACGAGCTCGTTACGGCGTACAAGGACCAGACGAAGGGCTTGATCGACG GCGGTTCCGACATCATCATCGTGGAGACAATCTTCGACACGCTCAACGCT AAGGCGGCCGTCTTCGCTGTGCGAGAGTGAGTGCGTGCCGTGTGTGCGGC GCGGGGTTCCAGAAAAGGACTCATGAAAGACGAGGCGCTTACCGCACCGC CCTTTAGTGACTCATTGTAAAACAAATTGTGTCCCGGTAAAAAAAAATGT TGAATGTATTCTGATGGAAGAGGGAAATAGCGGAAGCCTTCGTGGACGTT GTGTTGCGGCGTGTGTTGCGGCGACACTTGGAAGAAGCACCAAAATATTT ACACATTTGAAAATAAAAGACATCTCTGTCTGACCAAGCGTCGTCTTGCT CGACGTTGGTGGGTTCGGGGGCGGGGGCGGGGGTGTTTCTGCCCTACGTC GCGCTGGTTGTGTTACAGGTACTTGGACGAACATGATCTCACGGACATCC CTCTCTTTGTCTCGGGCACCCTGGTAGACCAGTCCGGCAGGACTCTCTCC GGCCAAACTACTGAGGTGCGCGCTGGTTTAATGTCCTCAGTGGGGGCAGG AGCGACATTCAGTGGAGAGGGTCATGGCTTCGGCTAACGCGGCTAATCCC TTTTTTTAACTCACCCACTCTAGTGTTGTAATTTCTACGGCAACCGCTGC CTGGGTGGTTCGAAGTCGGAGTGTGTGTAGGTTGACGGCTCAGTCGGCAG GCCTGGGATAGCCACCCCCGCACTCCCCCGTCCTTAAAATGATGTTTGCG ATATAGTTCAGGGTGAGCACGGTGTCCCGTGCCCCGTGCGCTCGGGCCAT TTGAGCGCTGACAATTTATTCTCGCAAACACTTGCGGGGTTAATTTTAAG ATGCGTGTTTGAATTTTTGCTTGTGTGCGCGTCGGAGCAGGGGTTCTACG TGTCCATGAGGCACTGCAGACCGTTCTGTCTGGGGTTAAACTGCGCCCTC GGGGCCACACAGATGCGACCGTTCCTCCAGCGCCTTGCCAAGGTGGCCGA ATGCTTCGTGCACGTTTACTCGAACGCCGGGCTGCCGAACGCTATGGGCG GGTACGACGATACGCCCGAAGACATGGCGCGCGACAACCTTCTCTTCGCA GAAGAGGAGCTCATCAACATGCTCGGGGGCTGTTGCGGGTCCACCCCAGC CCACATCAAGGTAGGCTTTTTTTTCTTCTTTACCTATTCATGAACAATAT TTTTTGCTGAAACACTTAATCAGACTACGCTTACGGAGAAACCACGATCG CGTGGCCGCTTGTACGCTTGCGTAGGCGTTACCTTTGACTTTGCTGTGGC TCCTTTTTTATGGGGGAGGGGTACACATCCGCGAGCACGATGGGAACGCC TGGCAAAAAGCGGGTCGGGATCATCAAGGGTTAGCATCATGTCCATGGTC GTGTCCATTCGAAACGCGCAGCAATCCTTGAATCTCGAGCGTTCCTCTGA CCACTTGAATTATCCGGCGTACTGACAAACCCTTTCCCTTCCCTTCCCCT TCTCTCTCGCTTATTTCTGTTTGTAATCGTGGCGGGCTTTTCGTGCGTCG TGTACCGTCCTTTTGTCTGCTGCAGGCGATGAAGGAGGCCATTGCACACT GCTCCACTCGCGCCCTTCCACCCCCTCGCGAACCTTTCATGTGGCTGTCC GGCCTGGAAGACCTGGTGGTGACCAAGGAACGCTTCCAGTTTCTGAACGT CGGGGAGCGGTGAGCACCATCTTGGTACCCTCTTTTGGTACCTAGTTTAT TTAATATTTCCAAGATAATGTCTCTGTGTTTGTGTGTTTTTGTTTTCTGC TGTGAATCTTCTCCATCCCCCTATCCCCCTATAATCAATAATCGCTTCTA ACGTGTGTACCACTATTAGTACAGTAAATTTCGATTTTTTCATAGTCGCG CCTTTGCAACGCGCAACTTTTAACGCGTGTAGTAGTCCACTACAGGTGCG TGCTCTACGTCACGTTACCTTCCCTATTGTACAGGTTTTTCAGAAACGCC TCCGTAACGTTTGCCACAGGTGTAACGTAGCCGGCTCCATCAGGTTCAAG AAACTCATCCTCAGCGGTGACTACCAGACGGCTATGGATGTGGCGAAGAA ACAGGTGACGCAACACCTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig86666:236..2457+

>mRNA_H-elongata_contig86666.16224.1 ID=mRNA_H-elongata_contig86666.16224.1|Name=mRNA_H-elongata_contig86666.16224.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig86666:236..2457+ (Himanthalia elongata Himel1 dioecious)
TCTGACATTTTCAAGGACGTGGAGGACCCGTCATTCCGAAACGTGACATT
TGACGAGCTCGTTACGGCGTACAAGGACCAGACGAAGGGCTTGATCGACG
GCGGTTCCGACATCATCATCGTGGAGACAATCTTCGACACGCTCAACGCT
AAGGCGGCCGTCTTCGCTGTGCGAGATCTGACATTTTCAAGGACGTGGAG
GACCCGTCATTCCGAAACGTGACATTTGACGAGCTCGTTACGGCGTACAA
GGACCAGACGAAGGGCTTGATCGACGGCGGTTCCGACATCATCATCGTGG
AGACAATCTTCGACACGCTCAACGCTAAGGCGGCCGTCTTCGCTGTGCGA
GAGTACTTGGACGAACATGATCTCACGGACATCCCTCTCTTTGTCTCGGG
CACCCTGGTAGACCAGTCCGGCAGGACTCTCTCCGGCCAAACTACTGAGG
TACTTGGACGAACATGATCTCACGGACATCCCTCTCTTTGTCTCGGGCAC
CCTGGTAGACCAGTCCGGCAGGACTCTCTCCGGCCAAACTACTGAGGGGT
TCTACGTGTCCATGAGGCACTGCAGACCGTTCTGTCTGGGGTTAAACTGC
GCCCTCGGGGCCACACAGATGCGACCGTTCCTCCAGCGCCTTGCCAAGGT
GGCCGAATGCTTCGTGCACGTTTACTCGAACGCCGGGCTGCCGAACGCTA
TGGGCGGGTACGACGATACGCCCGAAGACATGGCGCGCGACAACCTTCTC
TTCGCAGAAGAGGAGCTCATCAACATGCTCGGGGGCTGTTGCGGGTCCAC
CCCAGCCCACATCAAGGGGTTCTACGTGTCCATGAGGCACTGCAGACCGT
TCTGTCTGGGGTTAAACTGCGCCCTCGGGGCCACACAGATGCGACCGTTC
CTCCAGCGCCTTGCCAAGGTGGCCGAATGCTTCGTGCACGTTTACTCGAA
CGCCGGGCTGCCGAACGCTATGGGCGGGTACGACGATACGCCCGAAGACA
TGGCGCGCGACAACCTTCTCTTCGCAGAAGAGGAGCTCATCAACATGCTC
GGGGGCTGTTGCGGGTCCACCCCAGCCCACATCAAGGCGATGAAGGAGGC
CATTGCACACTGCTCCACTCGCGCCCTTCCACCCCCTCGCGAACCTTTCA
TGTGGCTGTCCGGCCTGGAAGACCTGGTGGTGACCAAGGAACGCTTCCAG
TTTCTGAACGTCGGGGAGCGGCGATGAAGGAGGCCATTGCACACTGCTCC
ACTCGCGCCCTTCCACCCCCTCGCGAACCTTTCATGTGGCTGTCCGGCCT
GGAAGACCTGGTGGTGACCAAGGAACGCTTCCAGTTTCTGAACGTCGGGG
AGCGGTGTAACGTAGCCGGCTCCATCAGGTTCAAGAAACTCATCCTCAGC
GGTGACTACCAGACGGCTATGGATGTGGCGAAGAAACAGGTGACGCAACA
CCTTTAGGTGTAACGTAGCCGGCTCCATCAGGTTCAAGAAACTCATCCTC
AGCGGTGACTACCAGACGGCTATGGATGTGGCGAAGAAACAGGTGACGCA
ACACCTTTAG
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