mRNA_H-elongata_contig86613.16220.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86613.16220.1
Unique NamemRNA_H-elongata_contig86613.16220.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86613.16220.1 vs. uniprot
Match: B1N8E9_9PHAE (Glutathione S-transferase 4 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E9_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 4.270e-38
Identity = 67/105 (63.81%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:    1 MPITLYYFDLPARAEATRLALGMAGTEFEDKRLSFAEFTASPFSALPI---DGVDYTQSTALLKYAGKLAGIYPEDPLTALKADEIVMMAEDCFINVFPTVWEKD 306
            MP    YF +PAR EATR+AL +AG ++EDKR+SF EF A  F  LP+   DG DYTQSTALL+YAGKL G YPE PL +LK DEIVM+AED FIN+F T+ EKD
Sbjct:    1 MPAVFNYFGIPARGEATRVALAVAGVDYEDKRMSFEEFGACEFKTLPVYQMDGTDYTQSTALLRYAGKLGGQYPECPLASLKVDEIVMIAEDVFINLFSTMGEKD 105
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BLAST of mRNA_H-elongata_contig86613.16220.1 vs. uniprot
Match: D7G5G0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G0_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.790e-31
Identity = 59/104 (56.73%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:   10 TLYYFDLPARAEATRLALGMAGTEFEDKRLSFAEFTASPFSA-----LPIDGVDYTQSTALLKYAGKLAGIYPEDPLTALKADEIVMMAEDCFINVFPTVWEKD 306
            TL YF+LP RAEATR+AL  AG EF+DKRL+F E+ A  ++      L +DG +YTQSTALL+YAGKL G+YP+D L ALK DEIVM+ ED   N+F  +  +D
Sbjct:    6 TLNYFELPGRAEATRVALAYAGKEFDDKRLTFPEYGACKWAGKGLPVLQMDGAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIGEDILANMFKCMGAED 109
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BLAST of mRNA_H-elongata_contig86613.16220.1 vs. uniprot
Match: D7G5G1_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G1_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 6.330e-30
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   10 TLYYFDLPARAEATRLALGMAGTEFEDKRLSFAEFTASPFSA-----LPIDGVDYTQSTALLKYAGKLAGIYPEDPLTALKADEIVMMAEDCFINVFPTVWEKD 306
            TL+YFD P RAEATR+AL  AG +FED  + F E+ AS ++      L +D  +YTQSTALL+YAGKL G+YP+D L ALK DEIVM+AED   N+F  V +KD
Sbjct:    6 TLHYFDDPGRAEATRVALAYAGKDFEDNIMGFPEYGASKWAGIGLPVLEMDDAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIAEDVMANMFKCVDQKD 109
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BLAST of mRNA_H-elongata_contig86613.16220.1 vs. uniprot
Match: D7G536_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G536_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 2.590e-29
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:   10 TLYYFDLPARAEATRLALGMAGTEFEDKRLSFAEFTASPFSA-----LPIDGVDYTQSTALLKYAGKLAGIYPEDPLTALKADEIVMMAEDCFINVFPTVWEK 303
            TL YF LP R EATR+AL  AG +FED R+ F E+ A  ++      L ++G +YTQSTALL+YAGKL G+YPED L ALK DEIVM+ ED   N+F  + EK
Sbjct:    6 TLNYFGLPGRGEATRVALVYAGKDFEDNRMGFPEYGACKWAGKGLPVLEMNGFEYTQSTALLRYAGKLGGLYPEDALAALKVDEIVMIGEDIMANMFKCMGEK 108
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BLAST of mRNA_H-elongata_contig86613.16220.1 vs. uniprot
Match: D7G537_ECTSI (Glutathione S-transferase n=4 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G537_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 6.940e-29
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:   10 TLYYFDLPARAEATRLALGMAGTEFEDKRLSFAEFTASPFSA-----LPIDGVDYTQSTALLKYAGKLAGIYPEDPLTALKADEIVMMAEDCFINVFPTVWEKD 306
            TL YF LP R EATR+AL  AG +FED R+ F E+ A  ++      L +D  +YTQSTALL+YAGKL G+YP+D L ALK DEIVM+AED   N+F  + ++D
Sbjct:    6 TLNYFGLPGRGEATRVALAYAGKDFEDNRMGFPEYGACKWAGKGLPVLEMDDAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIAEDVMANMFKCMGQED 109
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BLAST of mRNA_H-elongata_contig86613.16220.1 vs. uniprot
Match: UPI001BD97AB4 (glutathione S-transferase family protein n=1 Tax=Curvibacter sp. CHRR-16 TaxID=2835872 RepID=UPI001BD97AB4)

HSP 1 Score: 93.2 bits (230), Expect = 1.890e-21
Identity = 51/103 (49.51%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    7 ITLYYFDLPA-RAEATRLALGMAGTEFEDKRLSFAEFT----ASPFSALP---IDGVDYTQSTALLKYAGKLAGIYPEDPLTALKADEIVMMAEDCFINVFPT 291
            +TL YFD+P  R E  RLAL + G  FEDKR ++A+F      +P   +P   +DGV  TQS ALL+YAGKLAG+YP DP  AL  DE++  AED  I +  T
Sbjct:    4 LTLTYFDMPGGRGEPIRLALHLGGIAFEDKRFAYADFAQVRATTPLGQVPTLEVDGVQVTQSDALLRYAGKLAGLYPTDPFQALLCDEVLQGAEDANIKLSAT 106
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BLAST of mRNA_H-elongata_contig86613.16220.1 vs. uniprot
Match: A0A0L0DBM7_THETB (Ralgps2 protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DBM7_THETB)

HSP 1 Score: 94.7 bits (234), Expect = 1.660e-20
Identity = 52/107 (48.60%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    7 ITLYYFDLPARAEATRLALGMAGTEFEDKRLSFAEFTAS----PFSALP---IDGVDYTQSTALLKYAGKLAGIYPEDPLTALKADEIVMMAEDCFINVFPTVWEKD 306
            + L YF  P RA A R  L   G EFED  ++FA+F A     P+ A+P   IDG DY QS A+L+YAGKL G YPEDP+ AL  DE++  AED    + P++ EKD
Sbjct:    6 LKLTYFPFPGRAGAIRDVLNDNGVEFEDFHVAFADFPALKPSLPYGAMPVLEIDGTDYAQSNAILRYAGKLTGAYPEDPVAALMVDELLDAAEDVIGLLTPSMKEKD 112
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BLAST of mRNA_H-elongata_contig86613.16220.1 vs. uniprot
Match: A0A7S2RA06_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RA06_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.880e-20
Identity = 47/107 (43.93%), Postives = 63/107 (58.88%), Query Frame = 1 
Query:    7 ITLYYFDLPARAEATRLALGMAGTEFEDKRLSFAEF-------TASPFSALPIDGVDYTQSTALLKYAGKLAGIYPEDPLTALKADEIVMMAEDCFINVFPTVWEKD 306
            + L YF L ARAE  RLAL +   +FED+R+S  EF       T      + +DG  + QS  +L+YAGK+  +YP+DPL ALK D+I+   ED    +FP VWE D
Sbjct:    8 LKLTYFPLKARAEPIRLALTVGKLKFEDERISVEEFFKRKPEFTFGSVPVMEVDGQQFAQSGPMLRYAGKITNLYPQDPLEALKVDQIIAGIEDLQGVLFPVVWESD 114
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BLAST of mRNA_H-elongata_contig86613.16220.1 vs. uniprot
Match: C9YGR5_CURXX (Uncharacterized protein n=3 Tax=Comamonadaceae TaxID=80864 RepID=C9YGR5_CURXX)

HSP 1 Score: 89.7 bits (221), Expect = 3.980e-20
Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    7 ITLYYFDLPA-RAEATRLALGMAGTEFEDKRLSFAEFT----ASPFSALP---IDGVDYTQSTALLKYAGKLAGIYPEDPLTALKADEIVMMAEDCFINVFPT 291
            + L YFD+   RAE  RLAL + G  F+D R +F +F     ++PF  +P   +DG  +TQS ALL++AGKLAG+YP DPL AL  DE+  + ED  + + PT
Sbjct:    4 LKLSYFDMHGGRAEPVRLALHLGGVAFDDHRFTFPQFAEIRKSTPFGQVPTLDVDGTQFTQSDALLRFAGKLAGLYPTDPLQALYCDEVTYVVEDAGVKMGPT 106
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BLAST of mRNA_H-elongata_contig86613.16220.1 vs. uniprot
Match: A0A1V9ZXN5_9STRA (Glutathione S-transferase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXN5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.470e-20
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    7 ITLYYFDLPARAEATRLALGMAGTEFEDKRLSFAEFTAS----PFSALP---IDGVDYTQSTALLKYAGKLAGIYPEDPLTALKADEIVMMAED 267
            + L YFDL ARAE TRLAL +AG  FED+RL+  EF       PF   P   IDG  + QS A+ +YAG+L G+YP DPL A + DE++  ++D
Sbjct:    6 LKLSYFDLAARAELTRLALYIAGIPFEDERLTREEFAVRKPTLPFKQAPTLTIDGEVFAQSHAMARYAGRLGGLYPSDPLAAYRVDEVIASSDD 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86613.16220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B1N8E9_9PHAE4.270e-3863.81Glutathione S-transferase 4 n=1 Tax=Laminaria digi... [more]
D7G5G0_ECTSI1.790e-3156.73Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D7G5G1_ECTSI6.330e-3056.73Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D7G536_ECTSI2.590e-2955.34Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D7G537_ECTSI6.940e-2953.85Glutathione S-transferase n=4 Tax=Ectocarpus silic... [more]
UPI001BD97AB41.890e-2149.51glutathione S-transferase family protein n=1 Tax=C... [more]
A0A0L0DBM7_THETB1.660e-2048.60Ralgps2 protein n=1 Tax=Thecamonas trahens ATCC 50... [more]
A0A7S2RA06_9STRA1.880e-2043.93Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
C9YGR5_CURXX3.980e-2045.63Uncharacterized protein n=3 Tax=Comamonadaceae Tax... [more]
A0A1V9ZXN5_9STRA4.470e-2048.94Glutathione S-transferase (Fragment) n=1 Tax=Thrau... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86613contigH-elongata_contig86613:705..2693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue2.6e-17
Seed eggNOG ortholog529818.AMSG_06014T0
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K04097
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00590,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
GOsGO:0008150,GO:0010033,GO:0014070,GO:0042221,GO:0042493,GO:0045472,GO:0046677,GO:0050896,GO:0097327,GO:1901654,GO:1901700,GO:1904643
EggNOG free text desc.glutathione transferase activity
EggNOG OGsKOG1695@1,KOG1695@2759,KOG3417@1,KOG3417@2759
EC2.5.1.18,5.3.99.2
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Hectar predicted targeting categoryother localisation
Exons3
Model size306
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86613.16220.1prot_H-elongata_contig86613.16220.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86613 705..2693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931267.16282-CDS-H-elongata_contig86613:704..8451622931267.16282-CDS-H-elongata_contig86613:704..845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86613 705..845 +
1691679766.24826-CDS-H-elongata_contig86613:704..8451691679766.24826-CDS-H-elongata_contig86613:704..845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86613 705..845 +
1622931267.1884162-CDS-H-elongata_contig86613:1567..16631622931267.1884162-CDS-H-elongata_contig86613:1567..1663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86613 1568..1663 +
1691679766.2667313-CDS-H-elongata_contig86613:1567..16631691679766.2667313-CDS-H-elongata_contig86613:1567..1663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86613 1568..1663 +
1622931267.2048259-CDS-H-elongata_contig86613:2624..26931622931267.2048259-CDS-H-elongata_contig86613:2624..2693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86613 2625..2693 +
1691679766.274794-CDS-H-elongata_contig86613:2624..26931691679766.274794-CDS-H-elongata_contig86613:2624..2693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86613 2625..2693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86613.16220.1

>prot_H-elongata_contig86613.16220.1 ID=prot_H-elongata_contig86613.16220.1|Name=mRNA_H-elongata_contig86613.16220.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MPITLYYFDLPARAEATRLALGMAGTEFEDKRLSFAEFTASPFSALPIDG
VDYTQSTALLKYAGKLAGIYPEDPLTALKADEIVMMAEDCFINVFPTVWE
KD
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mRNA from alignment at H-elongata_contig86613:705..2693+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86613.16220.1 ID=mRNA_H-elongata_contig86613.16220.1|Name=mRNA_H-elongata_contig86613.16220.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1989bp|location=Sequence derived from alignment at H-elongata_contig86613:705..2693+ (Himanthalia elongata Himel1 dioecious)
ATGCCGATCACCCTGTACTACTTCGACCTACCCGCCCGCGCCGAGGCCAC
CCGCCTCGCCCTTGGCATGGCCGGAACGGAGTTCGAGGACAAGAGGCTTT
CTTTCGCCGAGTTCACAGCGTCGCCATTCAGCGCACTACCCGTCCTACAG
GCGAGATGATGGCCACCGCCGTAACGGGTTATTACTGCTTGCGTCATCAG
GACATGGTGGTCCCAGCCATGGGAGAACTGCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCACCCCCCCTTCCCCCCCCCCCACACCGCGTTACTAAGAACG
CGCGGAACCCNNNNNNNNNNCCCTCGGGGGTGTTTTTTCCCTCCTCCTAT
CTACGGGGGGCGCCCCCCCCACGGAGCGCCCCCCCCCCCCCCCCCCCCCC
CCCGACACCCATCCCTTCTCTCCCCGCAGAAAACGTGTGATAGATTGAGT
TCGAGCGCGCGCGCGTGGTTTTTAATATTATTGATGGAAGCTGGCCGACC
GGGGGAGGGGGTTGTTTTTTGTTTTTTCCCGGCCGGGGAGGTGTATGCTG
GAAATGACCTTGCTGTAATAGAGATACTTCGTATGTATTATGCATATATT
TTGAGCATGCTCGTTTGCAGCACATGTTTCCGATGCTTTCGCGATATCAA
GTAGTGCGGGAGGCGTCTCGTGGCTTGATCTTCATGAACACGGCACACGG
CTAGGTACTGTGCTTCTCCCGTGTGTGGATTGTAGAGAAGGCGTTTACGC
CCCGTCCTCCCGTCACCCCTATCCCCGGCCCCTCCTTCATCCCTTGCGCC
CTCGTCGTCCCTTCCGATTTTCTTCTTTTTTTTATCATTGTTTTGTTCTT
ATTATTCTTACAGATCGATGGCGTGGATTACACCCAGTCCACCGCGCTGC
TGAAGTACGCGGGCAAGCTCGCCGGGATCTACCCGGAGGACCCGCTGACT
GCCCTAAAGGTGGGATGGACGGACGCGAGAGATGGTGGCCTCACGCCGGA
AATACTCCAACGTCCCCGAGGTTCAGCGTGCTCATGCAAGCCTTAGAGAT
GCGGTGTTCATTTCCATCCCCCATTTCTCGGGTCTTGCTGTTCAGCGCCA
TAAATAATTATACCGGTCGTATTGCCGAAGAGACACCGAAGTGCTAAGAA
GGCGTGGGTGCTTGAATGAGTATTATTACTATTAGTATTATTATGAATAT
TATGAATATTATTGTTATGGTGATAATACTAATAATAGGGGTAGATGCCT
GAATGAGTTCAAATGGGTTAGTAGTAAAAAATAATAATAGTTAATAGTAA
TTCTAATAATAATAGTAATAACAATCGTAACGATGGTAATAGTAATTATA
ATGATAATAATAATGATAATAGCAATAATAGTAATAGTAATAATAATAAT
AGTAATAATAATTATTATTATTATTTTAAATAATAATAATAGTAATAATT
ATTATTATTATTATTTTAAATAATAATAATAGTAATAATCATTATAATAG
TAATAATAATAATAGTAATAATAATAATAATAATAATAATAATAATAATA
ATAATAGCAGTAATAGTAATAATAGTAATAATCATAATCATAATTATAAT
CATAATAATCATAACATGCCAAAATTCTGAGCAAATTAAATCGGGAGCCC
CTGCAGCGTGGCGCCATAAATAGTACAATACGGTACTAAATAGTAAAATA
GTACAATAGTACAATACGGTAGTAGCAAAAATGGGATATCTGTACGGAAA
TGATACGGTAGCAAAAATCAATACGGTCCAGAATAGGATACTGTACAGGT
AGTAGGGTGGTAGGCTCAACCCCATTCATCTATCGCAGCCATCTAAGCAT
CTGGGTCGGGCGTGGGGCGTGTGGGGGGCACTGTCTGACTTGCGACGCTC
ACGATGATGGGGGGGAACAGGCTGACGAAATCGTGATGATGGCGGAGGAC
TGCTTCATCAACGTCTTCCCTACCGTGTGGGAGAAGGAT
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Coding sequence (CDS) from alignment at H-elongata_contig86613:705..2693+

>mRNA_H-elongata_contig86613.16220.1 ID=mRNA_H-elongata_contig86613.16220.1|Name=mRNA_H-elongata_contig86613.16220.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig86613:705..2693+ (Himanthalia elongata Himel1 dioecious)
ATGCCGATCACCCTGTACTACTTCGACCTACCCGCCCGCGCCGAGGCCAC
CCGCCTCGCCCTTGGCATGGCCGGAACGGAGTTCGAGGACAAGAGGCTTT
CTTTCGCCGAGTTCACAGCGTCGCCATTCAGCGCACTACCCATGCCGATC
ACCCTGTACTACTTCGACCTACCCGCCCGCGCCGAGGCCACCCGCCTCGC
CCTTGGCATGGCCGGAACGGAGTTCGAGGACAAGAGGCTTTCTTTCGCCG
AGTTCACAGCGTCGCCATTCAGCGCACTACCCATCGATGGCGTGGATTAC
ACCCAGTCCACCGCGCTGCTGAAGTACGCGGGCAAGCTCGCCGGGATCTA
CCCGGAGGACCCGCTGACTGCCCTAAAGATCGATGGCGTGGATTACACCC
AGTCCACCGCGCTGCTGAAGTACGCGGGCAAGCTCGCCGGGATCTACCCG
GAGGACCCGCTGACTGCCCTAAAGGCTGACGAAATCGTGATGATGGCGGA
GGACTGCTTCATCAACGTCTTCCCTACCGTGTGGGAGAAGGATGCTGACG
AAATCGTGATGATGGCGGAGGACTGCTTCATCAACGTCTTCCCTACCGTG
TGGGAGAAGGAT
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