mRNA_H-elongata_contig86606.16219.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86606.16219.1
Unique NamemRNA_H-elongata_contig86606.16219.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86606.16219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86606contigH-elongata_contig86606:378..1004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size627
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86606.16219.1prot_H-elongata_contig86606.16219.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86606 557..934 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931267.0738137-UTR-H-elongata_contig86606:377..5561622931267.0738137-UTR-H-elongata_contig86606:377..556Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86606 378..556 +
1691679766.2207973-UTR-H-elongata_contig86606:377..5561691679766.2207973-UTR-H-elongata_contig86606:377..556Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86606 378..556 +
1622931267.1107578-UTR-H-elongata_contig86606:934..10041622931267.1107578-UTR-H-elongata_contig86606:934..1004Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86606 935..1004 +
1691679766.237961-UTR-H-elongata_contig86606:934..10041691679766.237961-UTR-H-elongata_contig86606:934..1004Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86606 935..1004 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931267.0927808-CDS-H-elongata_contig86606:556..9341622931267.0927808-CDS-H-elongata_contig86606:556..934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86606 557..934 +
1691679766.229422-CDS-H-elongata_contig86606:556..9341691679766.229422-CDS-H-elongata_contig86606:556..934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86606 557..934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86606.16219.1

>prot_H-elongata_contig86606.16219.1 ID=prot_H-elongata_contig86606.16219.1|Name=mRNA_H-elongata_contig86606.16219.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MTAVETGVQKTQQEPLLTDARSAGDCQGAGGWLHEVRQEERVQDLGPPRN
RGSRGVVGKRLSAGESSGRPRRVWQYRSGPNAETREAQGPYPLRDVSVDH
SSLRVIKARLSVEKGPHSYPWSSPC*
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mRNA from alignment at H-elongata_contig86606:378..1004+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86606.16219.1 ID=mRNA_H-elongata_contig86606.16219.1|Name=mRNA_H-elongata_contig86606.16219.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=627bp|location=Sequence derived from alignment at H-elongata_contig86606:378..1004+ (Himanthalia elongata Himel1 dioecious)
ATCGGAACCAGGAACCAGGGGGGGTGGCCAATAACCTGTTCAAGCGGGAG
CACGGGGGTCGACACCATAGCCGGAGCAACAAGGATGTACACCATAGCCG
GAACACGGGAGCGGACGCCAGACCCGAAGCAGAGGGTTAGGGCGCGCAGA
CGTCGCATGATGACAGCTGAGACCGCCGCATGACAGCAGTTGAGACCGGA
GTGCAGAAGACGCAACAGGAACCCCTCCTCACGGATGCGCGAAGCGCGGG
GGACTGTCAAGGAGCTGGGGGGTGGCTACACGAGGTACGGCAAGAGGAAC
GAGTTCAAGACCTCGGTCCGCCCCGAAACAGGGGAAGCCGGGGAGTGGTG
GGTAAGAGGCTTTCAGCCGGTGAGTCCAGCGGGAGACCGCGGCGAGTCTG
GCAGTACCGATCTGGACCTAATGCGGAAACGCGCGAGGCCCAAGGTCCCT
ACCCCCTGAGAGACGTTAGCGTCGATCACTCGAGCCTTAGGGTAATCAAG
GCACGATTAAGCGTGGAAAAAGGCCCTCACTCTTACCCATGGTCCAGCCC
TTGTTAGCATGCCTTCCTCTGGAAGATGTGCTGGGGGGGTGTTGCGGGCT
GATATAACGGTAACGTACATATTACAG
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Coding sequence (CDS) from alignment at H-elongata_contig86606:378..1004+

>mRNA_H-elongata_contig86606.16219.1 ID=mRNA_H-elongata_contig86606.16219.1|Name=mRNA_H-elongata_contig86606.16219.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig86606:378..1004+ (Himanthalia elongata Himel1 dioecious)
ATGACAGCAGTTGAGACCGGAGTGCAGAAGACGCAACAGGAACCCCTCCT
CACGGATGCGCGAAGCGCGGGGGACTGTCAAGGAGCTGGGGGGTGGCTAC
ACGAGGTACGGCAAGAGGAACGAGTTCAAGACCTCGGTCCGCCCCGAAAC
AGGGGAAGCCGGGGAGTGGTGGGTAAGAGGCTTTCAGCCGGTGAGTCCAG
CGGGAGACCGCGGCGAGTCTGGCAGTACCGATCTGGACCTAATGCGGAAA
CGCGCGAGGCCCAAGGTCCCTACCCCCTGAGAGACGTTAGCGTCGATCAC
TCGAGCCTTAGGGTAATCAAGGCACGATTAAGCGTGGAAAAAGGCCCTCA
CTCTTACCCATGGTCCAGCCCTTGTTAGATGACAGCAGTTGAGACCGGAG
TGCAGAAGACGCAACAGGAACCCCTCCTCACGGATGCGCGAAGCGCGGGG
GACTGTCAAGGAGCTGGGGGGTGGCTACACGAGGTACGGCAAGAGGAACG
AGTTCAAGACCTCGGTCCGCCCCGAAACAGGGGAAGCCGGGGAGTGGTGG
GTAAGAGGCTTTCAGCCGGTGAGTCCAGCGGGAGACCGCGGCGAGTCTGG
CAGTACCGATCTGGACCTAATGCGGAAACGCGCGAGGCCCAAGGTCCCTA
CCCCCTGAGAGACGTTAGCGTCGATCACTCGAGCCTTAGGGTAATCAAGG
CACGATTAAGCGTGGAAAAAGGCCCTCACTCTTACCCATGGTCCAGCCCT
TGTTAG
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