prot_H-elongata_contig86524.16217.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig86524.16217.1
Unique Name	prot_H-elongata_contig86524.16217.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	59

Homology

[Close]

BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5JVM6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.700e-17
Identity = 38/55 (69.09%), Postives = 42/55 (76.36%), Query Frame = 0

Query:    4 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 58
            EF ATNTPQ+IGVSER G TL A+ R +L D  FP  MWGEL MTAA+L NRTPH
Sbjct:  242 EFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPH 296

[Close]

BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.330e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0

Query:    4 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 58
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGEL +TAA+L NR+PH
Sbjct:   62 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPH 116

[Close]

BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.400e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0

Query:    4 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 58
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGEL +TAA+L NR+PH
Sbjct:  520 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPH 574

[Close]

BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.410e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0

Query:    4 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 58
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGEL +TAA+L NR+PH
Sbjct:  196 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPH 250

[Close]

BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.420e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0

Query:    4 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 58
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGEL +TAA+L NR+PH
Sbjct:  392 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPH 446

[Close]

BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.430e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0

Query:    4 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 58
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGEL +TAA+L NR+PH
Sbjct:  196 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPH 250

[Close]

BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.430e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0

Query:    4 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 58
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGEL +TAA+L NR+PH
Sbjct:  196 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPH 250

[Close]

BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.430e-17
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0

Query:    4 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 58
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGEL +TAA+L NR+PH
Sbjct:  196 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPH 250

[Close]

BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.390e-17
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 0

Query:    4 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 58
            E+ ATNTPQQIGVSER G TL  + RC+L D  FP SMWGE+ +TAA+L NR+PH
Sbjct:  150 EYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGEIMLTAAYLLNRSPH 204

[Close]

BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Match: A0A6H5JQY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY8_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.670e-17
Identity = 38/55 (69.09%), Postives = 42/55 (76.36%), Query Frame = 0

Query:    4 EFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAAHLKNRTPH 58
            EF ATNTPQ+IGVSER G TL A+ R +L D  FP  MWGEL MTAA+L NRTPH
Sbjct:  390 EFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPH 444

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot

BLAST of mRNA_H-elongata_contig86524.16217.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JVM6_9PHAE	3.700e-17	69.09	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K5H2_9PHAE	4.330e-17	67.27	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KVF6_9PHAE	4.400e-17	67.27	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K500_9PHAE	4.410e-17	67.27	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JSL6_9PHAE	4.420e-17	67.27	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JRJ1_9PHAE	4.430e-17	67.27	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JJR8_9PHAE	4.430e-17	67.27	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5KCT3_9PHAE	4.430e-17	67.27	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KF63_9PHAE	5.390e-17	65.45	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5JQY8_9PHAE	5.670e-17	69.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..59 e-value: 1.0E-6 score: 30.1
None	No IPR available	PANTHER	PTHR11439:SF265		coord: 1..57
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..57
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..59

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig86524	contig	H-elongata_contig86524:2153..2329 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig86524.16217.1	mRNA_H-elongata_contig86524.16217.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig86524 2153..2329 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig86524.16217.1 ID=prot_H-elongata_contig86524.16217.1|Name=mRNA_H-elongata_contig86524.16217.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
IIQEFTATNTPQQIGVSERVGSTLCAMVRCMLADSGFPSSMWGELFMTAA
HLKNRTPHK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf