prot_H-elongata_contig8651.16216.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8651.16216.1
Unique Nameprot_H-elongata_contig8651.16216.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length227
Homology
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BLAST of mRNA_H-elongata_contig8651.16216.1 vs. uniprot
Match: A0A6H5KLB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.240e-18
Identity = 92/240 (38.33%), Postives = 106/240 (44.17%), Query Frame = 0 
Query:   20 LDQASLFLGLRKLGHEQLA---------GADASA-----TSGDS----SVGGVGESGSCSTARLVARGLLERMRVTSDKYVAFPTSKGASRAGYLPVAPSGLESEQQXXXXXXHPRPAAGSAILTPIIPSKLSTPPREMTGRDWDKTAAQAMIPESSADKGVGTASNAAHGAGKASEQSERGVGGLTFAG--------------FMAWSSVHGGRMMLVKDLVYASLAEFGMRPVKAVQE 227
            +D ASL LGLRKLG+E L          GADA+A     T+G        GGV +S    T R VAR LL  MR TSD+YV  P +  AS     P   +     QQ                 TP IP     P +          A       ++ +   G AS    G G        G GGLT                 FMAWSSVHGGR+MLVKDLVYA LAEFGM+P KAVQE
Sbjct:  386 VDMASLTLGLRKLGYEDLESLILIDKQYGADAAAXXXXXTTGSGCDGGGSGGVRDSAD-GTTRAVARKLLRDMRATSDRYVVVPPASPASS----PATSTAFPLSQQPP---------------TPPIPR---LPQQXXXXNRQGPVAGAXXXXXAAVNNAGGPASE--EGWGLRGGSGVVGRGGLTXXXXXXXXXXXXXXXXXFMAWSSVHGGRLMLVKDLVYACLAEFGMQPAKAVQE 600
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BLAST of mRNA_H-elongata_contig8651.16216.1 vs. uniprot
Match: A0A835YVN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.920e-6
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 0 
Query:  186 GLTFAGFMAWSSVHGGRMMLVKDLVYASLAEFGMRPVKAVQE 227
            GLTFAG+MAWS+ H GRM L+ DL + ++AE GMRP  A QE
Sbjct:  524 GLTFAGYMAWSAAHPGRMQLLHDLAFIAIAECGMRPATAAQE 565
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8651.16216.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLB3_9PHAE5.240e-1838.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YVN1_9STRA1.920e-661.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8651contigH-elongata_contig8651:8657..9551 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8651.16216.1mRNA_H-elongata_contig8651.16216.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8651 8657..9551 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8651.16216.1 ID=prot_H-elongata_contig8651.16216.1|Name=mRNA_H-elongata_contig8651.16216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
CSGVQHRGHRHHHHQTNHQLDQASLFLGLRKLGHEQLAGADASATSGDSS
VGGVGESGSCSTARLVARGLLERMRVTSDKYVAFPTSKGASRAGYLPVAP
SGLESEQQQRQQQHHPRPAAGSAILTPIIPSKLSTPPREMTGRDWDKTAA
QAMIPESSADKGVGTASNAAHGAGKASEQSERGVGGLTFAGFMAWSSVHG
GRMMLVKDLVYASLAEFGMRPVKAVQE
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