mRNA_H-elongata_contig8651.16216.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8651.16216.1
Unique NamemRNA_H-elongata_contig8651.16216.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8651.16216.1 vs. uniprot
Match: A0A6H5KLB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.240e-18
Identity = 92/240 (38.33%), Postives = 106/240 (44.17%), Query Frame = 1 
Query:   58 LDQASLFLGLRKLGHEQLA---------GADASA-----TSGDS----SVGGVGESGSCSTARLVARGLLERMRVTSDKYVAFPTSKGASRAGYLPVAPSGLESEQQXXXXXXHPRPAAGSAILTPIIPSKLSTPPREMTGRDWDKTAAQAMIPESSADKGVGTASNAAHGAGKASEQSERGVGGLTFAG--------------FMAWSSVHGGRMMLVKDLVYASLAEFGMRPVKAVQE 681
            +D ASL LGLRKLG+E L          GADA+A     T+G        GGV +S    T R VAR LL  MR TSD+YV  P +  AS     P   +     QQ                 TP IP     P +          A       ++ +   G AS    G G        G GGLT                 FMAWSSVHGGR+MLVKDLVYA LAEFGM+P KAVQE
Sbjct:  386 VDMASLTLGLRKLGYEDLESLILIDKQYGADAAAXXXXXTTGSGCDGGGSGGVRDSAD-GTTRAVARKLLRDMRATSDRYVVVPPASPASS----PATSTAFPLSQQPP---------------TPPIPR---LPQQXXXXNRQGPVAGAXXXXXAAVNNAGGPASE--EGWGLRGGSGVVGRGGLTXXXXXXXXXXXXXXXXXFMAWSSVHGGRLMLVKDLVYACLAEFGMQPAKAVQE 600
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BLAST of mRNA_H-elongata_contig8651.16216.1 vs. uniprot
Match: A0A835YVN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.920e-6
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:  556 GLTFAGFMAWSSVHGGRMMLVKDLVYASLAEFGMRPVKAVQE 681
            GLTFAG+MAWS+ H GRM L+ DL + ++AE GMRP  A QE
Sbjct:  524 GLTFAGYMAWSAAHPGRMQLLHDLAFIAIAECGMRPATAAQE 565
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8651.16216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLB3_9PHAE5.240e-1838.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YVN1_9STRA1.920e-661.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8651contigH-elongata_contig8651:8657..9551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size682
Cds size681
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931266.5555737-CDS-H-elongata_contig8651:8656..86851622931266.5555737-CDS-H-elongata_contig8651:8656..8685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8651 8657..8685 +
1691679766.054726-CDS-H-elongata_contig8651:8656..86851691679766.054726-CDS-H-elongata_contig8651:8656..8685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8651 8657..8685 +
1622931266.573197-CDS-H-elongata_contig8651:8899..95511622931266.573197-CDS-H-elongata_contig8651:8899..9551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8651 8900..9551 +
1691679766.0646818-CDS-H-elongata_contig8651:8899..95511691679766.0646818-CDS-H-elongata_contig8651:8899..9551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8651 8900..9551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8651.16216.1prot_H-elongata_contig8651.16216.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8651 8657..9551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8651.16216.1

>prot_H-elongata_contig8651.16216.1 ID=prot_H-elongata_contig8651.16216.1|Name=mRNA_H-elongata_contig8651.16216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
CSGVQHRGHRHHHHQTNHQLDQASLFLGLRKLGHEQLAGADASATSGDSS
VGGVGESGSCSTARLVARGLLERMRVTSDKYVAFPTSKGASRAGYLPVAP
SGLESEQQQRQQQHHPRPAAGSAILTPIIPSKLSTPPREMTGRDWDKTAA
QAMIPESSADKGVGTASNAAHGAGKASEQSERGVGGLTFAGFMAWSSVHG
GRMMLVKDLVYASLAEFGMRPVKAVQE
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mRNA from alignment at H-elongata_contig8651:8657..9551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8651.16216.1 ID=mRNA_H-elongata_contig8651.16216.1|Name=mRNA_H-elongata_contig8651.16216.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=895bp|location=Sequence derived from alignment at H-elongata_contig8651:8657..9551+ (Himanthalia elongata Himel1 dioecious)
TGCAGTGGTGTCCAGCACCGTGGACACAGGTGAAATATCGAAATGTAACG
AGGCGCCTCTTCTCTGTATACCCTTCGCATTCAGAGTGTGACTATCTTCC
CCCGCCCCCCGTCTCCCAATCGGTATACAAAACCCTTGAGATATAGTAGT
TTTGATGGATTTGTCGAGTAAACGGTACGTGGGCCATTCATGTGTCGATA
TAATTTTCTCCTGGATTTGGTACGGTATCTCAAATCCTTTCAGGCACCAT
CATCACCAGACTAACCATCAGCTGGACCAAGCTTCGCTGTTCCTCGGTCT
TCGGAAGCTGGGACACGAACAACTTGCTGGCGCGGATGCCAGCGCGACCA
GCGGAGACAGCAGCGTCGGGGGCGTCGGTGAAAGTGGTAGCTGTAGCACC
GCTAGGCTAGTCGCCCGGGGTCTTTTGGAGAGAATGCGCGTCACGTCCGA
CAAGTACGTAGCGTTTCCGACCTCCAAGGGTGCTAGCCGGGCGGGGTACC
TCCCCGTGGCTCCTTCTGGGCTGGAGTCAGAGCAGCAGCAGCGACAGCAG
CAACACCATCCCCGCCCTGCTGCTGGGTCTGCCATCCTGACGCCCATCAT
ACCTTCGAAGTTATCAACACCACCGCGGGAGATGACCGGAAGAGACTGGG
ATAAAACTGCGGCGCAGGCGATGATACCTGAGAGCTCAGCGGATAAGGGT
GTTGGTACGGCAAGTAATGCTGCGCACGGGGCGGGAAAAGCTAGCGAACA
AAGCGAACGGGGCGTTGGTGGGCTGACCTTTGCGGGTTTTATGGCATGGT
CGAGCGTACACGGGGGCAGGATGATGCTGGTGAAGGACTTGGTGTATGCA
AGCCTGGCAGAGTTCGGGATGAGGCCGGTGAAGGCGGTGCAAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig8651:8657..9551+

>mRNA_H-elongata_contig8651.16216.1 ID=mRNA_H-elongata_contig8651.16216.1|Name=mRNA_H-elongata_contig8651.16216.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig8651:8657..9551+ (Himanthalia elongata Himel1 dioecious)
TGCAGTGGTGTCCAGCACCGTGGACACAGTGCAGTGGTGTCCAGCACCGT
GGACACAGGCACCATCATCACCAGACTAACCATCAGCTGGACCAAGCTTC
GCTGTTCCTCGGTCTTCGGAAGCTGGGACACGAACAACTTGCTGGCGCGG
ATGCCAGCGCGACCAGCGGAGACAGCAGCGTCGGGGGCGTCGGTGAAAGT
GGTAGCTGTAGCACCGCTAGGCTAGTCGCCCGGGGTCTTTTGGAGAGAAT
GCGCGTCACGTCCGACAAGTACGTAGCGTTTCCGACCTCCAAGGGTGCTA
GCCGGGCGGGGTACCTCCCCGTGGCTCCTTCTGGGCTGGAGTCAGAGCAG
CAGCAGCGACAGCAGCAACACCATCCCCGCCCTGCTGCTGGGTCTGCCAT
CCTGACGCCCATCATACCTTCGAAGTTATCAACACCACCGCGGGAGATGA
CCGGAAGAGACTGGGATAAAACTGCGGCGCAGGCGATGATACCTGAGAGC
TCAGCGGATAAGGGTGTTGGTACGGCAAGTAATGCTGCGCACGGGGCGGG
AAAAGCTAGCGAACAAAGCGAACGGGGCGTTGGTGGGCTGACCTTTGCGG
GTTTTATGGCATGGTCGAGCGTACACGGGGGCAGGATGATGCTGGTGAAG
GACTTGGTGTATGCAAGCCTGGCAGAGTTCGGGATGAGGCCGGTGAAGGC
GGTGCAAGAAGCACCATCATCACCAGACTAACCATCAGCTGGACCAAGCT
TCGCTGTTCCTCGGTCTTCGGAAGCTGGGACACGAACAACTTGCTGGCGC
GGATGCCAGCGCGACCAGCGGAGACAGCAGCGTCGGGGGCGTCGGTGAAA
GTGGTAGCTGTAGCACCGCTAGGCTAGTCGCCCGGGGTCTTTTGGAGAGA
ATGCGCGTCACGTCCGACAAGTACGTAGCGTTTCCGACCTCCAAGGGTGC
TAGCCGGGCGGGGTACCTCCCCGTGGCTCCTTCTGGGCTGGAGTCAGAGC
AGCAGCAGCGACAGCAGCAACACCATCCCCGCCCTGCTGCTGGGTCTGCC
ATCCTGACGCCCATCATACCTTCGAAGTTATCAACACCACCGCGGGAGAT
GACCGGAAGAGACTGGGATAAAACTGCGGCGCAGGCGATGATACCTGAGA
GCTCAGCGGATAAGGGTGTTGGTACGGCAAGTAATGCTGCGCACGGGGCG
GGAAAAGCTAGCGAACAAAGCGAACGGGGCGTTGGTGGGCTGACCTTTGC
GGGTTTTATGGCATGGTCGAGCGTACACGGGGGCAGGATGATGCTGGTGA
AGGACTTGGTGTATGCAAGCCTGGCAGAGTTCGGGATGAGGCCGGTGAAG
GCGGTGCAAGAA
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