mRNA_H-elongata_contig8650.16213.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A438IJY3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IJY3_VITVI) HSP 1 Score: 132 bits (333), Expect = 2.610e-32 Identity = 74/196 (37.76%), Postives = 112/196 (57.14%), Query Frame = 1
Query: 1 EPTTMGEAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGIKLEAKGFQKVDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERF 588
+P ++ + + SS+ +W A+ EM GVW +VE PKG ++G + +FK K D G I + K LVA+GF Q +GI Y+E FSP ++ S R++ ++ VD C++ + GT +++V+YVDD+L+AS+ + R L S F +KDLG S+ LG I RDR+ G L+ Q YI V RF
Sbjct: 747 DPISVSQVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVELPKGVKLIGCKWIFKIKRDSKGNIVRYKAHLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALE------NTVDQCIYLK-FSGTKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILRLSQKAYIDKVLSRF 935
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE) HSP 1 Score: 129 bits (324), Expect = 5.620e-32 Identity = 74/209 (35.41%), Postives = 115/209 (55.02%), Query Frame = 1
Query: 49 WKRAIAREMNGQTARGVWQVVE-CPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGIK------------------------LEAKGFQ--KVDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERFDV 594
W+RA++ E G G + V+ P+G+ + +R F K +K+G++E K RLVA+GF Q+ + Y SP P+ ASI+++ + L GF+ K DPC+FR+++ VV++IV+YVDD+LVA + + D E+ + L F K+LG+ ++ GC I RD AGTL+ Q YI ++ ERFDV
Sbjct: 15 WERAMSEEFEGHLGTGTFSFVDGAPEGRRPVSSRWCFSWKTNKEGKVENFKARLVARGFSQIPNVDYFHSSSPGPSSASIKLMLAVADEKGINLNHWDVKQAQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDV 222
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A438FXS9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FXS9_VITVI) HSP 1 Score: 122 bits (305), Expect = 1.390e-28 Identity = 71/211 (33.65%), Postives = 114/211 (54.03%), Query Frame = 1
Query: 1 EPTTMGEAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFG-------------IKLEAKGFQKVDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERFDV 594
+P T EA +S + +W A+ EM + VW++V+ PKG +G + VFK K D G +E+CK RLVA+G+ Q +GI + E FSP + R+V +K+ K + C++ ++ +G+ + +V+Y+DD+L+AS+ R L + F +KDLG+ S+ LG I RDR+ L Q YI V +RF++
Sbjct: 407 DPNTYCEALSSDKANEWLIAMRDEMQSMSDNDVWELVDLPKGYKPIGCKWVFKTKRDNKGNVERCKARLVARGYTQREGIDFTETFSPVSTKDYFRLVMALVAHFDLELHQMDVKIAFLNENKFNQCVYMKV-NGSKYIFMVLYIDDILLASSNVNLLNDTKRILSANFDMKDLGEASFVLGIEIYRDRSRNLLGLSQIAYINRVLKRFNM 616
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A438FNN4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FNN4_VITVI) HSP 1 Score: 116 bits (291), Expect = 1.070e-26 Identity = 71/209 (33.97%), Postives = 108/209 (51.67%), Query Frame = 1
Query: 1 EPTTMGEAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVF-------------GIKLEAKGFQKVDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERF 588
+P ++ + + SS+ +W A+ EM GVW +VE P+G +G + +FK K D G I + K RLVA+ F Q + I Y+E FSP ++ S R++ +K +D C++ + G+ +++V+YVDD+L+AS+ + R L S F +KDLG S LG I RDR+ G L Q YI V RF
Sbjct: 483 DPISVSQVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVELPEGVKSIGCKWIFKTKWDSKGNIVRYKARLVAKVFTQKEDIDYKETFSPVSSKDSFRIIMTLVAHYDLELHQMDVKTVFLNENTIDQCIYLK-FSGSKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASLVLGIQIHRDRSRGILGLSQKAYIDKVLSRF 690
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A5BKE8_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BKE8_VITVI) HSP 1 Score: 116 bits (291), Expect = 1.090e-26 Identity = 71/200 (35.50%), Postives = 108/200 (54.00%), Query Frame = 1
Query: 52 KRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGIKLEAK-----------------GFQK--VDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERFDV 594
K+A+ EMN GVW +VE P G ++G + VFK K D +IE+ K RLV +G+ Q +GI ++E FSP + S R++ +K K GF+ V+ C++ R+ G+ + +V+YVDD+L+AS + L + F +KDLG+ SY LG I RDR G LK Q YI+ + + F++
Sbjct: 617 KQAMDDEMNSMYMNGVWDLVELPHGCKLVGCKWVFKTKRDSSEKIERYKARLVVKGYSQREGIDFKETFSPVSTKDSFRVIMAVKPSLKQALRQWYLKFDRIITQNGFKDNTVERCIYLRV-SGSSYIFLVLYVDDILLASNDSDLLIETKHMLSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQRTYIEKILKMFNM 815
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A6A4D1J5_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4D1J5_9STRA) HSP 1 Score: 114 bits (286), Expect = 4.740e-26 Identity = 78/264 (29.55%), Postives = 121/264 (45.83%), Query Frame = 1
Query: 1 EPTTMGEAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQV---------------------------KGIHYEEFFSPTP-AQASIRMVFGIKLEAKGFQ----------------------------------------KVDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERF 588
EP T+ EA+ S +W +WK+AI E+ A G + VV P G V+GT + F+ K DGR+++ + R+ AQGF+++ GIH + PT +A++R V +K + KGF+ + DPC+ + H ++V++VYVDD+L+ + D + + L + IKDLG+ S++LG H+TRD G +K DQ QY V ERF
Sbjct: 321 EPLTLEEARRSPQWTEWKKAILAEIEALRANGTFTVVTPPAGAHVIGTTMNFRVKRHADGRVDRLRARICAQGFQEIYMIDFVDTYAPVARLISIRVFLAECNQSGIHIRQGDVPTAFVKANLREVIYVK-QPKGFEEGEPGQVWLLHKALYGLKQAGREWYIELDEFLRSQGLVPTREDPCVHK---HPAKLLVVLVYVDDILIGYKNEEDMRELMNALEVKYGIKDLGELSWFLGMHVTRDFERGVMKIDQEQYAIEVCERF 580
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A438GBB1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GBB1_VITVI) HSP 1 Score: 114 bits (285), Expect = 7.290e-26 Identity = 73/205 (35.61%), Postives = 105/205 (51.22%), Query Frame = 1
Query: 1 EPTTMGEAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGIKLEAKGFQKVDPCMFRRILHG---------TVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERF 588
+P + +A + E W A+ EM+ VW +VE P G +G + VFK K D G IE+ K RLVA+GF Q +GI Y E FSP + ++ G + G Q V C ++ ++G + V +V+YVDD+L+A+ K + + L F +KD+G+ SY +G I RDR G L Q YI V ERF
Sbjct: 1198 DPESFSQAMSCKESELWYNAMKDEMSSMKCNDVWDLVELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPLEEEVYMKQPEGFP-SSDGEQLV--CKLKKSIYGLKQASRQCGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERF 1399
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A5AFZ5_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AFZ5_VITVI) HSP 1 Score: 114 bits (284), Expect = 9.620e-26 Identity = 66/210 (31.43%), Postives = 106/210 (50.48%), Query Frame = 1
Query: 1 EPTTMGEAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGIKLEAKGFQK--------------VDPCMFRRILHGTVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERF 588
+P +A SS +W A+ E VW++V P G +G + +FK K D +G +E+ K RLVA+GF Q +GI ++E FSP + S R++ ++ + + K +D C++ + G+ + +V+YVDD+L+A+ R L F +KD+G S+ LG I RDR+ G L Q YI V +R+
Sbjct: 788 DPINFQQAMKSSNSQKWIEAMNEEYKSMQDNKVWELVPLPVGTKPIGCKWIFKTKRDSNGNVERYKARLVAKGFTQKEGIDFKETFSPVSTKDSFRIIMALQASRQWYFKFHQIIVSYGFEANLMDECVYHK-FSGSKYIFLVLYVDDILLATNDISILHDTKRFLSKHFEMKDIGDASFILGIQIHRDRSRGILGLSQRTYIDKVLQRY 996
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A438E557_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E557_VITVI) HSP 1 Score: 113 bits (282), Expect = 1.370e-25 Identity = 73/218 (33.49%), Postives = 111/218 (50.92%), Query Frame = 1
Query: 1 EPTTMGEAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGI---------KLEAKG----------FQKVDPCMFRRILHGTV---VVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERF 588
+P ++ + + SS+ +W A+ EM GVW +VE P+G +G + +FK K D G I + K RLVA+GF Q +GI Y+E FSP ++ S R++ + +++ K V P F + ++++V+YVDD+L+AS+ + R L S F +KDLG S+ LG I RDR+ G L Q YI V RF
Sbjct: 214 DPISVSQVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVELPEGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLWEQIIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRF 431
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Match: A0A438EBZ3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EBZ3_VITVI) HSP 1 Score: 113 bits (282), Expect = 1.820e-25 Identity = 73/204 (35.78%), Postives = 105/204 (51.47%), Query Frame = 1
Query: 10 TMGEAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRKIDKDGRIEKCKCRLVAQGFRQVKGIHYEEFFSPTPAQASIRMVFGIKLEAKGFQKVDPCMFRRILHG---------TVVVVIVVYVDDLLVASATKCDKEQAVRDLRSCFSIKDLGQTSYYLGCHITRDRNAGTLKFDQHQYIQTVAERFDV 594
++ +A + E W A+ EM+ VW +VE P G +G + VFK K D G IE+ K RLVA+GF Q +GI Y E FSP + ++ G + G Q V C ++ ++G + V +V+YVDD+L+A+ K + + L F +KD+G+ SY LG I RDR G L Q YI V ERF +
Sbjct: 733 SLSQAMSCKESELWYNAMKDEMSSMKCNDVWDLVELPNGAKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPLEEEVYMKQPEGFP-SSDGEQLV--CKLKKSIYGLKQASRQCGSKVCFLVLYVDDILLATNDKGLLHEVKQFLFKNFDMKDMGEASYVLGIKIHRDRFKGILGLSQETYINKVLERFQM 933 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8650.16213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8650.16213.1 >prot_H-elongata_contig8650.16213.1 ID=prot_H-elongata_contig8650.16213.1|Name=mRNA_H-elongata_contig8650.16213.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp MGEAQASSEWPQWKRAIAREMNGQTARGVWQVVECPKGKTVLGTRVVFKRback to top mRNA from alignment at H-elongata_contig8650:7721..8506+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8650.16213.1 ID=mRNA_H-elongata_contig8650.16213.1|Name=mRNA_H-elongata_contig8650.16213.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=786bp|location=Sequence derived from alignment at H-elongata_contig8650:7721..8506+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8650:7721..8506+ >mRNA_H-elongata_contig8650.16213.1 ID=mRNA_H-elongata_contig8650.16213.1|Name=mRNA_H-elongata_contig8650.16213.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig8650:7721..8506+ (Himanthalia elongata Himel1 dioecious)back to top |