mRNA_H-elongata_contig86444.16208.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig86444.16208.1 vs. uniprot
Match: D7FUK2_ECTSI (Alpha-ketoglutarate-dependent dioxygenase FTO n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK2_ECTSI) HSP 1 Score: 203 bits (517), Expect = 1.940e-57 Identity = 114/185 (61.62%), Postives = 130/185 (70.27%), Query Frame = 1
Query: 1 KVHDEAQSAFDGLEEGGVFRADVTQPFGLGTKCAVTYVTRTLVGDPGTSYKYLGLRMFSIPWTQEDSSCKARGASSGGGRENSVSAALARVRRLNNHLSKRARRLLEEKRTRGRGGAEGR----DAIGEELGSCSFNVALINRMEPLEDRPDLKLEPTFGRDR----YRHTGCTYMYACMYGYHI 531
KVH+EA+ AFDGLEEGGVFRADVTQPFGLGTKCAVTYVTRTL GDPGT+YKYLGLRMFS PWT A+ A S GG + V +AL RV LNN L +R+ RLL R RGG +G+ G E GSC FNVALINRMEP +DRPDLKLEPTFG+DR + C Y+ + YH+
Sbjct: 96 KVHEEARQAFDGLEEGGVFRADVTQPFGLGTKCAVTYVTRTLAGDPGTTYKYLGLRMFSHPWTTT-----AKEADSDGGHGSGVPSALRRVGLLNNKLKERSLRLL-----RARGGRKGKARREGGEGNEFGSCEFNVALINRMEPSDDRPDLKLEPTFGQDRCSVSWHADSCLEHYSSIAVYHV 270
BLAST of mRNA_H-elongata_contig86444.16208.1 vs. uniprot
Match: A0A7S3Q6H3_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q6H3_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.650e-25 Identity = 71/161 (44.10%), Postives = 98/161 (60.87%), Query Frame = 1
Query: 7 HDEAQSAFDGLEEGGVFRADVTQPFGLGTKCAVTYVTRTLVGDPGTSYKYLGLRMFSIPWTQE---DSSCKARGASSGGGRENSVSAALARVRRLNNHLSKRARRLLEE-KRTRGRGGAEGRDAIGEELGSCSFNVALINRMEPLEDRPDLKLEPTFGRDR 477
H + Q A +++ G+FR DVTQPFGLGTKCA TYVTR L+G+ GT+YKYLGLRMF+ PW + ++ G SS G+E ++ AL + LN +L+ R + L+ ++TR R I G ++VALINRM + PDLK EPT G+ +
Sbjct: 133 HHDVQKALLKMDQHGLFRTDVTQPFGLGTKCAKTYVTRCLLGEEGTTYKYLGLRMFAHPWNIDIGNGTNTTNEGTSSDEGKE--INTALKAISTLNQNLTGRTQTHLKGLEQTRQRRNYSSHPCI---KGRAKYDVALINRMT---NAPDLKKEPTMGKGK 285
BLAST of mRNA_H-elongata_contig86444.16208.1 vs. uniprot
Match: A0A7S2XRF9_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRF9_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.540e-22 Identity = 69/159 (43.40%), Postives = 87/159 (54.72%), Query Frame = 1
Query: 7 HDEAQSAFDGLEEGGVFRADVTQPFGLGTKCAVTYVTRTLVGDPGTSYKYLGLRMFSIPWTQEDSSCKARGASSGGGRENSVSAALARVRRLNNHLSKRARRLLEE--KRTRGRGGAEGRDAIGEELGSCSFNVALINRMEPLEDRPDLKLEPTFGRDR 477
H + ++A +++ G FR DVTQPFGLGTKCA TYVTR L+G+ GT+YKYLGLRMF+ PW SG ++ A+ V LN L+ R+ L E K+ RGRG + G F+V LINRME D LK E T G R
Sbjct: 125 HAKIRNALCSMQDAGFFRTDVTQPFGLGTKCAKTYVTRCLLGEAGTTYKYLGLRMFAHPWDGSAEKESINDKHSG----MNIFEAVTTVSDLNETLTHRSSHHLSELDKKRRGRGAEPTK-------GRAGFDVTLINRMEGTSD---LKSEVTTGEGR 269
BLAST of mRNA_H-elongata_contig86444.16208.1 vs. uniprot
Match: A0A7S1VUV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VUV2_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 7.520e-22 Identity = 61/151 (40.40%), Postives = 82/151 (54.30%), Query Frame = 1
Query: 7 HDEAQSAFDGLEEGGVFRADVTQPFGLGTKCAVTYVTRTLVGDPGTSYKYLGLRMFSIPWTQEDSSCKARGASSGGGRENSVSAALARVRRLNNHLSKRARRLLEE-KRTRGRGGAEGRDAIGEELGSCSFNVALINRM---EPLEDRPDL 447
H ++A + ++ G FR DVTQP G GTKCA TYVTR L+GD GT+YKYLGLRMF+ PW ++ +NSV +A+ + LN L++R LE R R G + G F++ALINRM L+D P +
Sbjct: 25 HASVENALENMQRAGFFRTDVTQPKGFGTKCAKTYVTRCLLGDEGTTYKYLGLRMFAHPWD----------GAAPNANDNSVESAIKVMHDLNTRLTERTDSHLEALNRHRSERG------VPLSKGRAGFDIALINRMVHTSELKDEPSM 159
BLAST of mRNA_H-elongata_contig86444.16208.1 vs. uniprot
Match: A0A1E7EVX5_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVX5_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 5.140e-20 Identity = 63/158 (39.87%), Postives = 79/158 (50.00%), Query Frame = 1
Query: 10 DEAQSAFDGLEEGGVFRADVTQPFGLGTKCAVTYVTRTLVGDPGTSYKYLGLRMFSIPWT----------------QEDSSCKARGASSGGGRENSVSAALARVRRLNNHLSKRARRLLEEKRTRGRGGAEGRDAIGEELGSCSFNVALINRMEPLED 435
D Q++ + + GG+FR DVTQPFGLGTKCA TYVTR LVG PGT+YKYLGLRMF+ PWT + D+ + + ALA R HL R L+E R + R + G F++ LINRME D
Sbjct: 106 DVVQNSLESMSRGGIFRTDVTQPFGLGTKCAKTYVTRCLVGSPGTTYKYLGLRMFAHPWTTSTXXXXXXXXXXXMKRNDNERRVCHTVVTNDAQTIQELALALTNRTKKHL-----RDLDESRRQ-------RQPMFGTRGRPGFDICLINRMESSSD 251
BLAST of mRNA_H-elongata_contig86444.16208.1 vs. uniprot
Match: A0A448Z616_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z616_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 2.840e-18 Identity = 73/178 (41.01%), Postives = 92/178 (51.69%), Query Frame = 1
Query: 4 VHDE-AQSAFDGLEEGGVFRADVTQPFGLGTKCAVTYVTRTLVGDPGTSYKYLGLRMFSIPWTQEDSSCKARGASSGGG----RENSVSAALARVRRLN------------------------NHLSKRARRLLEEKRTRGRGGAEGRDAIGEELGSCSFNVALINRMEPLEDRPDLK 450
+H+E S+ + +E G+FR DVTQPFGLGTKCA TYVTR LVG+ GT+YKYLGLRMF+ PWT D S +A A GG R A+V +LN NHL R L+++R + R A G +F++ LINRME PDLK
Sbjct: 103 IHEEIVLSSLETMEGEGIFRTDVTQPFGLGTKCAKTYVTRCLVGERGTTYKYLGLRMFAHPWT--DGSEEA--ADDRGGKKRKRRKRAQGCDAKVDQLNQAFDEAKTTSTIQELGKSLTMRTANHL-----RDLDQRRRQRRAPAT--------RGRPNFDICLINRME---SSPDLK 260
BLAST of mRNA_H-elongata_contig86444.16208.1 vs. uniprot
Match: A0A7S4EG83_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG83_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 2.850e-18 Identity = 66/169 (39.05%), Postives = 84/169 (49.70%), Query Frame = 1
Query: 19 QSAFDGLEEGGVFRADVTQPFGLGTKCAVTYVTRTLVGDPGTSYKYLGLRMFSIPWTQEDSSCKARGASSG-----------------GGRENS----------VSAALARVRRLNNHLSKRAR---RLLEEKRTRGRGGAEGRDAIGEELGSCSFNVALINRMEPLED 435
QS+ + + GG FR DVTQPFGLGTKCA TYVTR LVG GT+YKYLGLRMF+ PWT SS + + G GR+N+ V + + L +L+KR R L+E R + R G +F++ LINRME D
Sbjct: 130 QSSLESMMRGGHFRTDVTQPFGLGTKCAKTYVTRCLVGAKGTTYKYLGLRMFAHPWTAGKSSNEINDNTDGPINSNVNKRRKRTNYDRSGRKNNPDEGDGCHDVVDENASIIHELGKNLTKRVSKHARNLDEARRQRR--------APPTRGRLNFDICLINRMESSSD 290
BLAST of mRNA_H-elongata_contig86444.16208.1 vs. uniprot
Match: A0A7R9U8A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8A5_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 2.940e-18 Identity = 57/152 (37.50%), Postives = 78/152 (51.32%), Query Frame = 1
Query: 4 VHDEAQSAFDGLEEGGVFRADVTQPFGLGTKCAVTYVTRTLVGDPGTSYKYLGLRMFSIPWTQEDSSCKARGASSGGGRENSVSAALARVRRLNNHLSKRARRLLEEKRTRGRGGAEGRDAIGEELGSCSFNVALINRMEPLEDRPDLKLEP 459
+H+ + AF L + G+FR DV Q G + T+V RTLVG+PG +YKYLGLR+F+ PW + S+ + A A V +LN L R + LLEE +R GSC FN+ LIN ME +E+ P L+ P
Sbjct: 41 LHEGYRRAFRQLRKDGLFRHDVVQAGGK--VLSKTFVRRTLVGEPGITYKYLGLRIFAHPWRGDGSAAPTK--------------ACALVGQLNEALKARTKALLEEDGSR-------------RSGSCDFNLTLINEMEAMENDPALRQSP 163
BLAST of mRNA_H-elongata_contig86444.16208.1 vs. uniprot
Match: A0A7S2RU45_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RU45_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 9.320e-16 Identity = 60/155 (38.71%), Postives = 81/155 (52.26%), Query Frame = 1
Query: 4 VHDEAQSAFDGLEEGGVFRADVTQPFGLGTKCAVTYVTRTLVGDPGTSYKYLGLRMFSIPWTQEDSSCKARGASSGGGRENSVSAALARVRRLNNHLSKRARRLLEEKRTRGRGGAEGRDAIGEELGSCSFNVALINRMEPLEDRPDLKLEPTFG 468
+H F L+E GVF+ DV Q G + T+V RTLVGDPG +YKYLGLR+F+ PW +E + K + E + AL + RLN L RA LL ++ R + A +G FN+ LIN+MEP + L+ EP FG
Sbjct: 62 LHAAFGGVFQSLDEAGVFQYDVVQAGGK--ILSKTFVRRTLVGDPGITYKYLGLRIFAHPWCRETAPSKNPAEPN---IEPPIPKALQALYRLNEELISRAEGLLATEQQRRQLPA---------VGPTRFNLTLINQMEPTQVEKALRDEPLFG 202
BLAST of mRNA_H-elongata_contig86444.16208.1 vs. uniprot
Match: B8BV54_THAPS (Alpha-ketoglutarate-dependent dioxygenase FTO (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BV54_THAPS) HSP 1 Score: 79.3 bits (194), Expect = 5.050e-14 Identity = 58/163 (35.58%), Postives = 89/163 (54.60%), Query Frame = 1
Query: 4 VHDEAQSAFDGLEEGGVFRADVTQPFGLGTKCAV-TYVTRTLVGDPGTSYKYLGLRMFSIPWTQ--EDSSCKARGASSGG------GRENSVSAALARVRRLNNHLSKRARRLLEEKRTRGRGGAEGRDAIGEELGSCSFNVALINRMEPLEDRPDLKLEPTF 465
+H E +S+FDG++ G +F D QP G K T VTRTLVGDPG++YKYLGLR+FS PWT +D + +++ G G ++AL + R N +L++R+ +L++ A G +GS +N+ L+N+M + DLK E +
Sbjct: 112 LHGEFESSFDGMDAGDLFLYDTVQP---GKKRLTRTSVTRTLVGDPGSTYKYLGLRLFSHPWTDVDKDGNMQSKEQKRVGSTLHKLGYSEKTTSALLAMGRANAYLTERSNTMLKKYV------APNVQPPGL-VGSAEYNLTLVNKMASTTMKRDLKNEMAY 264 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86444.16208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig86444.16208.1 >prot_H-elongata_contig86444.16208.1 ID=prot_H-elongata_contig86444.16208.1|Name=mRNA_H-elongata_contig86444.16208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp KVHDEAQSAFDGLEEGGVFRADVTQPFGLGTKCAVTYVTRTLVGDPGTSYback to top mRNA from alignment at H-elongata_contig86444:135..1729- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig86444.16208.1 ID=mRNA_H-elongata_contig86444.16208.1|Name=mRNA_H-elongata_contig86444.16208.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1595bp|location=Sequence derived from alignment at H-elongata_contig86444:135..1729- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig86444:135..1729- >mRNA_H-elongata_contig86444.16208.1 ID=mRNA_H-elongata_contig86444.16208.1|Name=mRNA_H-elongata_contig86444.16208.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig86444:135..1729- (Himanthalia elongata Himel1 dioecious)back to top |