mRNA_H-elongata_contig86415.16206.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86415.16206.1
Unique NamemRNA_H-elongata_contig86415.16206.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig86415.16206.1 vs. uniprot
Match: D7FIJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ7_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.820e-16
Identity = 50/90 (55.56%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    7 DRDGLLGTIEAQERDIDDLKKSVYELSYMLSMQGSASLAAGNL----------AQTDAG-TRSSGRAVFDPRVGLTGGRLDSLNLVDEEG 243
            +RD L GTIEAQERDID+LKKSVYELSYMLSMQGSA  A  +           A T    T    R VFDPRVG+    LDSL L++  G
Sbjct:   24 ERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAGSAPASASLXXXXXXXXAATGGNVTGPPSRKVFDPRVGIATAHLDSLGLMNGGG 113
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BLAST of mRNA_H-elongata_contig86415.16206.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.200e-16
Identity = 51/90 (56.67%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    7 DRDGLLGTIEAQERDIDDLKKSVYELSYMLSMQGSASLAAGNLAQTDAGTR---SSG--------RAVFDPRVGLTGGRLDSLNLVDEEG 243
            +RD L GTIEAQERDID+LKKSVYELSYMLSMQGSA  A  + +   A  R   S+G        R VFDPRVGL    LD+L L++  G
Sbjct:   24 ERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAGSAPASASLAPAAARPGASTGGNVTGPPSREVFDPRVGLATAHLDALGLMNGGG 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86415.16206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIJ7_ECTSI3.820e-1655.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNQ7_9PHAE5.200e-1656.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86415contigH-elongata_contig86415:841..1943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000010.1
Hectar predicted targeting categoryother localisation
Exons3
Model size244
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86415.16206.1prot_H-elongata_contig86415.16206.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86415 841..1943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931265.4784772-CDS-H-elongata_contig86415:840..9451622931265.4784772-CDS-H-elongata_contig86415:840..945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86415 841..945 +
1691679765.7188637-CDS-H-elongata_contig86415:840..9451691679765.7188637-CDS-H-elongata_contig86415:840..945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86415 841..945 +
1622931265.4953647-CDS-H-elongata_contig86415:1502..15481622931265.4953647-CDS-H-elongata_contig86415:1502..1548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86415 1503..1548 +
1691679765.7320437-CDS-H-elongata_contig86415:1502..15481691679765.7320437-CDS-H-elongata_contig86415:1502..1548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86415 1503..1548 +
1622931265.5151374-CDS-H-elongata_contig86415:1851..19431622931265.5151374-CDS-H-elongata_contig86415:1851..1943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86415 1852..1943 +
1691679765.7465448-CDS-H-elongata_contig86415:1851..19431691679765.7465448-CDS-H-elongata_contig86415:1851..1943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86415 1852..1943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86415.16206.1

>prot_H-elongata_contig86415.16206.1 ID=prot_H-elongata_contig86415.16206.1|Name=mRNA_H-elongata_contig86415.16206.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MLDRDGLLGTIEAQERDIDDLKKSVYELSYMLSMQGSASLAAGNLAQTDA
GTRSSGRAVFDPRVGLTGGRLDSLNLVDEEG
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mRNA from alignment at H-elongata_contig86415:841..1943+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86415.16206.1 ID=mRNA_H-elongata_contig86415.16206.1|Name=mRNA_H-elongata_contig86415.16206.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1103bp|location=Sequence derived from alignment at H-elongata_contig86415:841..1943+ (Himanthalia elongata Himel1 dioecious)
ATGCTCGACAGGGATGGGCTGCTGGGCACGATCGAGGCGCAGGAGCGAGA
CATCGACGACCTCAAGAAGAGTGTGTACGAACTGTCGTACATGCTCTCCA
TGCAGGTGCAGTGACCTGCCTTGCTATCTTGTAGTGAGTGTGCTGCTTGT
ATACCCCCCCCACCCCTTTTGGCAAACAAACGATACAGAAATAAGACTGT
AGCACTTGGGCACCAGGAACCATCCATCCTTTGCCCGTTCGAGCGACTCA
GTCGCAAATACGGAGCGGTGTGTTACGCTTGAGCGATAGGGAGCGGTATA
GCGCGACGAGCGAGGGTTTTCGCCATCATTCCTCGTGTTTCGCGCGTTCG
GCGCACGCGCGAGAGCCACAATGAGTTGACCCCCGTGGGTGTTCCGCCAC
CCTGCGAAGGCGTTTCTACCCTGCGTCAGGTTGCACCAGAGTACGATCTT
CCCTCGCCTCGCCGCACGTCACTTGCAATTAGCGGTAAGCCTATTCGAGG
TGAACCCGCATCCGTTCGCGCGTCTTCCTTCCACCCAACTGCCCCCACCG
ACCCTCTCCCCTCTTCGCAAAAACGCCTCCACCCCTATTCGATGTCTTCC
CCGTCCCGCTGGACCATCCCTCCGCATGCTCCCCACCCAACACGTCCGCG
TCGTGCCAACAGGGTAGCGCAAGTCTTGCCGCCGGGAATCTCGCTCAGAC
AGACGCAGGTAAGATACTGGCTTCGCGACCGGCGTCGTGAAGATGACACC
GAGAGATACCGTATTCACCCACCAAGCTGTTCAGGCATTCGAAAATGACC
GTCGCCTAGAATATTCCACTTGTGTATCGACGGAACGATGCCGTGCAAGC
GACATCGCGCGCGCACGCACGCACACACGCGATTGTGCCTTCCCAAGTTC
GAGGGAAGGTGCGGTGCGATTTTTTTTGCGTGTGCAGGTGATGCGTGGCT
GGCCGGCTGAACCACCAATCATCCCGTCCGTTTTTTTTTTCCCTGGCGCG
GCGTGGGACAGGGACACGGTCGTCGGGAAGAGCCGTATTTGATCCTCGCG
TGGGGCTGACGGGGGGGCGCTTGGACTCGCTGAACCTCGTCGACGAAGAG
GGG
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Coding sequence (CDS) from alignment at H-elongata_contig86415:841..1943+

>mRNA_H-elongata_contig86415.16206.1 ID=mRNA_H-elongata_contig86415.16206.1|Name=mRNA_H-elongata_contig86415.16206.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig86415:841..1943+ (Himanthalia elongata Himel1 dioecious)
ATGCTCGACAGGGATGGGCTGCTGGGCACGATCGAGGCGCAGGAGCGAGA
CATCGACGACCTCAAGAAGAGTGTGTACGAACTGTCGTACATGCTCTCCA
TGCAGATGCTCGACAGGGATGGGCTGCTGGGCACGATCGAGGCGCAGGAG
CGAGACATCGACGACCTCAAGAAGAGTGTGTACGAACTGTCGTACATGCT
CTCCATGCAGGGTAGCGCAAGTCTTGCCGCCGGGAATCTCGCTCAGACAG
ACGCAGGGTAGCGCAAGTCTTGCCGCCGGGAATCTCGCTCAGACAGACGC
AGGGACACGGTCGTCGGGAAGAGCCGTATTTGATCCTCGCGTGGGGCTGA
CGGGGGGGCGCTTGGACTCGCTGAACCTCGTCGACGAAGAGGGGGGACAC
GGTCGTCGGGAAGAGCCGTATTTGATCCTCGCGTGGGGCTGACGGGGGGG
CGCTTGGACTCGCTGAACCTCGTCGACGAAGAGGGG
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