prot_H-elongata_contig86374.16204.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig86374.16204.1
Unique Nameprot_H-elongata_contig86374.16204.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length190
Homology
[Close]
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 4.760e-33
Identity = 80/197 (40.61%), Postives = 111/197 (56.35%), Query Frame = 0 
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPE-GLKIGIIRTDGGGEWHSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVALLRGVME-----GKSARLWAEAMAYACDMWNRCTSSSLDSG-TSPYKLWYGRRP 190
            C+ CS S+ +   + KST+ RA  +   LF++L G     S+ GN + ++  D+ TR+    FLKHKSDA  A    + DY A     ++ + RTDGGGE+  QF    R+ GIK E TPP  P+YNGV ERALGLL D  +A      E       S  LWAEA++ AC   N CT+++ + G  SP +L++G  P
Sbjct:  169 CLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN-CTATTGNPGHKSPEELFHGTPP 364
[Close]
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.390e-30
Identity = 71/199 (35.68%), Postives = 108/199 (54.27%), Query Frame = 0 
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLK-IGIIRTDGGGEW-HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 190
            C+ CS ++     +P  T  RA ++   +F+DLSG     SL G  + ++  D++TR+    FLKHKSDA  A    + +  A      + ++R+D GGE+   +F    RK  IK E TP + P+Y+GV ERALGL+ D  +A       L  G     S  LWAEA+A++C+  N  +++S     SPY++W+G  P
Sbjct:    9 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 205
[Close]
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.760e-29
Identity = 71/199 (35.68%), Postives = 109/199 (54.77%), Query Frame = 0 
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLK-IGIIRTDGGGEW-HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 190
            C+ CS ++     +P  T  RA ++    F++LSG     SL G  + ++  D++TR+    FLKHKSDA  A    + +  A      + ++R+D GGE+   +F    RK  IK E TP + P+YNGV ERALGL++D  +A       L  G    +S  LWAEA+A++C+  N  +++S     SPY++W+G  P
Sbjct:  341 CLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 537
[Close]
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.260e-29
Identity = 72/199 (36.18%), Postives = 109/199 (54.77%), Query Frame = 0 
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLK-IGIIRTDGGGEW-HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 190
            C+ CS ++     +P  T  RA ++   +F+DLSG     SL G  + ++  D++TR+    FLKHKSDA  A    + +  A      + ++R+D GGE+   +F    RK  IK E TP + P+YNGV ERALGL++D  +A       L  G     S  LWAEA+A++C+  N  +++S     SPY++W+G  P
Sbjct:  708 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 904
[Close]
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.290e-29
Identity = 72/199 (36.18%), Postives = 109/199 (54.77%), Query Frame = 0 
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLK-IGIIRTDGGGEW-HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 190
            C+ CS ++     +P  T  RA ++   +F+DLSG     SL G  + ++  D++TR+    FLKHKSDA  A    + +  A      + ++R+D GGE+   +F    RK  IK E TP + P+YNGV ERALGL++D  +A       L  G     S  LWAEA+A++C+  N  +++S     SPY++W+G  P
Sbjct:  543 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 739
[Close]
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.310e-29
Identity = 72/199 (36.18%), Postives = 109/199 (54.77%), Query Frame = 0 
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLK-IGIIRTDGGGEW-HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 190
            C+ CS ++     +P  T  RA ++   +F+DLSG     SL G  + ++  D++TR+    FLKHKSDA  A    + +  A      + ++R+D GGE+   +F    RK  IK E TP + P+YNGV ERALGL++D  +A       L  G     S  LWAEA+A++C+  N  +++S     SPY++W+G  P
Sbjct:  556 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 752
[Close]
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.340e-29
Identity = 72/199 (36.18%), Postives = 109/199 (54.77%), Query Frame = 0 
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLK-IGIIRTDGGGEW-HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 190
            C+ CS ++     +P  T  RA ++   +F+DLSG     SL G  + ++  D++TR+    FLKHKSDA  A    + +  A      + ++R+D GGE+   +F    RK  IK E TP + P+YNGV ERALGL++D  +A       L  G     S  LWAEA+A++C+  N  +++S     SPY++W+G  P
Sbjct:  699 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 895
[Close]
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.540e-28
Identity = 73/199 (36.68%), Postives = 107/199 (53.77%), Query Frame = 0 
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLK-IGIIRTDGGGEW-HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVA-------LLRGVMEGKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 190
            C+ CS ++     +P  T  RA +R   +F+DLSG     SL G  + ++  D +TR+    FLKHKSDA  A    + +  A      + ++R+D GGE+   +F    RK  IK E TP + P+YNGV ERALGL++D  +A       L  G     S   WAEA+A+AC+  N  +++S     SPY++W+G  P
Sbjct:  569 CLGCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPS--FWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPP 765
[Close]
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.200e-28
Identity = 69/184 (37.50%), Postives = 101/184 (54.89%), Query Frame = 0 
Query:   14 VPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGL--KIGIIRTDGGGEWHSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVALLRGVME-----GKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 190
            V KST  RA ++   +++DL G     S+ GN + ++  D+F+R+    FLKHKSDA       + DY   +G+  ++ I RTDGGGE+  QF    R+ GIK E TPP+ P+YNGV ERALGL+ D  +A      +          LWAEA++ AC   N   + S +   S Y++++   P
Sbjct:    9 VQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPP 191
[Close]
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 8.670e-28
Identity = 70/196 (35.71%), Postives = 102/196 (52.04%), Query Frame = 0 
Query:    1 CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVMLCIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEG-LKIGIIRTDGGGEWHSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVALLRGVME-----GKSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP 190
            C+ CS S+ +   V KST  RA  R   +++DL       S+ G+ + ++  D+F+R+    FLKHKSDA       + DY       ++ I RTDGGGE+  QF    R+ GIK E TPP+  +YNGV ERALGL+ D  +A      +          LWAEA++ AC   N   + S +   S Y++++   P
Sbjct:  169 CLGCSMSKGQVKPVQKSTSTRAVIRIFHVYLDLGRNMKTRSIGGSWYTLIIRDDFSRWTRDFFLKHKSDAAVGFEKFLADYRTKGAPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTQKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDNSAYEMFHDSSP 364
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86374.16204.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE4.760e-3340.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J7U9_9PHAE2.390e-3035.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1N9_9PHAE1.760e-2935.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JTI6_9PHAE6.260e-2936.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE6.290e-2936.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE6.310e-2936.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE6.340e-2936.18Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JXF7_9PHAE1.540e-2836.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAM7_9PHAE3.200e-2837.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZ88_9PHAE8.670e-2835.71Integrase catalytic domain-containing protein (Fra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 16..190
e-value: 5.5E-26
score: 93.0
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 28..139
e-value: 3.9E-13
score: 49.6
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 11..189
score: 19.031
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 3..145
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..145
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 28..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86374contigH-elongata_contig86374:987..1556 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86374.16204.1mRNA_H-elongata_contig86374.16204.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig86374 987..1556 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig86374.16204.1 ID=prot_H-elongata_contig86374.16204.1|Name=mRNA_H-elongata_contig86374.16204.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp
CVHCSESRVRRYAVPKSTENRADRRAGWLFIDLSGPFHETSLEGNRFVML
CIDNFTRFKMTRFLKHKSDATNALRDIINDYFAPEGLKIGIIRTDGGGEW
HSQFLSFLRKLGIKGESTPPYIPQYNGVVERALGLLRDKTVALLRGVMEG
KSARLWAEAMAYACDMWNRCTSSSLDSGTSPYKLWYGRRP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf