mRNA_H-elongata_contig8636.16202.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8636.16202.1
Unique NamemRNA_H-elongata_contig8636.16202.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8636.16202.1 vs. uniprot
Match: A0A6H5L6D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D7_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.200e-55
Identity = 100/164 (60.98%), Postives = 125/164 (76.22%), Query Frame = 1 
Query:   88 LLLSLPTVDAVKNS-----QFTIYERQTEEGPRHSPLFTLPVG-CEEEECPSKMILFSNDLYGSKDGLIEEDLNELIGYNQGHCIETMVTEGLFAECYFTFVFDGGSMTANGPFNFSADSWSVVPSVLAVTGGTGSYMGANGETALSAGPAENFTSLQFDFNVK 561
            LLL   TV+A +       +FT++ERQ+++GPRHSPLFTLPV   E+ E PSKM+LF+NDLYGS+D LI+E  + L+GYNQGHC+ET+ + G  AEC+FT+VFD GS+TANGPFNF A+   V+PS LAVTGGTG Y GA G   +SAGPAE F SLQFDF +K
Sbjct:   14 LLLGFATVEASRGKHEGSVEFTVFERQSDDGPRHSPLFTLPVPEAEDVEYPSKMVLFNNDLYGSEDDLIDEVQDALLGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDAED-GVLPSFLAVTGGTGEYDGALGCVEVSAGPAEEFPSLQFDFKLK 176
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BLAST of mRNA_H-elongata_contig8636.16202.1 vs. uniprot
Match: D8LRY1_ECTSI (Potential Allene oxide cyclase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY1_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 3.800e-41
Identity = 74/111 (66.67%), Postives = 88/111 (79.28%), Query Frame = 1 
Query:  229 MILFSNDLYGSKDGLIEEDLNELIGYNQGHCIETMVTEGLFAECYFTFVFDGGSMTANGPFNFSADSWSVVPSVLAVTGGTGSYMGANGETALSAGPAENFTSLQFDFNVK 561
            M+LF+NDLYGS+D LI+ED  ELIGYNQGHC+ET+ + G  AEC+FT+VFD GS+TANGPFNF  +   V+PS LAVTGGTG Y GA G   +SAGPAE F SLQFDF +K
Sbjct:    1 MVLFNNDLYGSEDHLIDEDQEELIGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDVED-GVLPSFLAVTGGTGEYDGAQGCVEVSAGPAEEFPSLQFDFKLK 110
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BLAST of mRNA_H-elongata_contig8636.16202.1 vs. uniprot
Match: A0A5C7NDL5_9PROT (Allene-oxide cyclase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NDL5_9PROT)

HSP 1 Score: 53.5 bits (127), Expect = 6.720e-5
Identity = 35/91 (38.46%), Postives = 47/91 (51.65%), Query Frame = 1 
Query:  241 SNDLYGSKDGLIEEDLNELIGYNQGHCIETMVTEGLFAECYFTFVFDGGSMTANGPFNFSADSWSVVPSVLAVTGGTGSYMGANGETALSA 513
            + DL    +G+ +    + IG + G CI T+   G   EC++T     G +T  GPF  + DS      VLAVTGGTGSY  A G+  L A
Sbjct:   52 AGDLLTFANGIYDATNEKKIGADNGWCIRTV--PGKAWECFWTISLPKGQITVEGPFYDAGDS------VLAVTGGTGSYTQARGQMTLHA 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8636.16202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L6D7_9PHAE1.200e-5560.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRY1_ECTSI3.800e-4166.67Potential Allene oxide cyclase, partial n=1 Tax=Ec... [more]
A0A5C7NDL5_9PROT6.720e-538.46Allene-oxide cyclase n=1 Tax=Rhodospirillaceae bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8636contigH-elongata_contig8636:5873..8590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size1562
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8636.16202.1prot_H-elongata_contig8636.16202.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8636 6853..8566 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931265.1398737-UTR-H-elongata_contig8636:5872..68521622931265.1398737-UTR-H-elongata_contig8636:5872..6852Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8636 5873..6852 -
1691679765.5616293-UTR-H-elongata_contig8636:5872..68521691679765.5616293-UTR-H-elongata_contig8636:5872..6852Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8636 5873..6852 -
1622931265.2149243-UTR-H-elongata_contig8636:8566..85901622931265.2149243-UTR-H-elongata_contig8636:8566..8590Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8636 8567..8590 -
1691679765.6024013-UTR-H-elongata_contig8636:8566..85901691679765.6024013-UTR-H-elongata_contig8636:8566..8590Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8636 8567..8590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931265.1577551-CDS-H-elongata_contig8636:6852..69361622931265.1577551-CDS-H-elongata_contig8636:6852..6936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8636 6853..6936 -
1691679765.5716338-CDS-H-elongata_contig8636:6852..69361691679765.5716338-CDS-H-elongata_contig8636:6852..6936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8636 6853..6936 -
1622931265.1786997-CDS-H-elongata_contig8636:7603..77891622931265.1786997-CDS-H-elongata_contig8636:7603..7789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8636 7604..7789 -
1691679765.5811965-CDS-H-elongata_contig8636:7603..77891691679765.5811965-CDS-H-elongata_contig8636:7603..7789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8636 7604..7789 -
1622931265.1977503-CDS-H-elongata_contig8636:8278..85661622931265.1977503-CDS-H-elongata_contig8636:8278..8566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8636 8279..8566 -
1691679765.5908434-CDS-H-elongata_contig8636:8278..85661691679765.5908434-CDS-H-elongata_contig8636:8278..8566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8636 8279..8566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8636.16202.1

>prot_H-elongata_contig8636.16202.1 ID=prot_H-elongata_contig8636.16202.1|Name=mRNA_H-elongata_contig8636.16202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MKMSRMVYRTAIAIIFVASTLLLLSLPTVDAVKNSQFTIYERQTEEGPRH
SPLFTLPVGCEEEECPSKMILFSNDLYGSKDGLIEEDLNELIGYNQGHCI
ETMVTEGLFAECYFTFVFDGGSMTANGPFNFSADSWSVVPSVLAVTGGTG
SYMGANGETALSAGPAENFTSLQFDFNVKTFLGKK*
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mRNA from alignment at H-elongata_contig8636:5873..8590-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8636.16202.1 ID=mRNA_H-elongata_contig8636.16202.1|Name=mRNA_H-elongata_contig8636.16202.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2718bp|location=Sequence derived from alignment at H-elongata_contig8636:5873..8590- (Himanthalia elongata Himel1 dioecious)
GTGAAAGGCTGTTGATAGCTCACTATGAAGATGTCCCGGATGGTTTACCG
TACGGCCATTGCCATTATTTTTGTGGCATCTACTCTACTTCTCCTGAGCT
TACCGACGGTGGATGCCGTGAAAAACTCGCAGTTTACCATTTACGAGAGG
CAGACCGAAGAAGGCCCTCGCCACAGTCCGCTCTTTACGCTACCCGTCGG
GTGCGAAGAAGAGGAGTGTCCCTCAAAAATGATTCTCTTCAGCAATGATC
TGTATGGCTCAAAAGATGGCCTGATTGAGGAGGACCTCAACGAGCTCATC
GGCTACAACCAGGTGCCCCAAATTTCAGAGTCTGCAGTGCCCCCCCTCCT
CTAGCACGTACGTAGCTTTACCACTTCAACTTCAAACTTGTTTCGTTGTA
ATTTCCCGTCCTTTTTTGCTATGATGCTATACATGACAGGAAGATCAGAC
GCATGTTGCCCGCGTGCTCAACACTTGTATCCGACACGCAAGTGTCGTAA
GTACGCGATGCGGTTGCTATTCTAAAGCTACATGGTCTGGCGTGGTGTTA
TCGCGAGACGAGTGTGCGCATATTACGTAATCGTTTTATTTATGGCGCAC
GTACCTTGAATTATTCAAGCTATCCGTTATTTGTACAGTCATGAACGAAC
GAGCGTCGTATTCTTTTACAGTGGTACAACACTCACTTTGAGATGTAGGA
TAACCAAGCGCTGCAAATACGGTGCACACAAAGAGTATAGAAAAGCACCT
CAGAGCCAGGCAAATTATCTAAGACATTTGATTTTGCCCATTACGCGGCA
GGGTCACTGCATCGAGACTATGGTCACGGAAGGGTTGTTTGCCGAATGCT
ACTTCACGTTCGTGTTCGACGGCGGCTCGATGACAGCAAACGGGCCGTTC
AACTTCAGCGCCGATTCGTGGAGCGTGGTCCCCTCTGTTCTAGCCGTCAC
CGGCGGTACCGGAAGCTACATGGGAGCCAACGGAGAGGTAGGTCCGCTAC
CCGTCCTCCTGACCGTATTATTTGCATACAATTTCATAACGTTTACTACG
ACGCACTGTTTATCGTTCCTGTTTAACATTGACGGCGTAAATTGTTTTTT
CGCGTATTTCCCAATGTATGACTGCTTAGCAACTGCCGACCCCAACCTAG
CCCCCGCAAAAAGAAGCATTAATATGGTCGCCCTATCAACGTCGCTTCTG
TCGATCGCTTGCGAGAGAAAATACTCCGTCTATTGGTCGGAAAGCCTCGG
CTGCAAACAGCTAACTGGTTCTCTCAGTATGTCCATATATTACGTATAGC
AGGACACGCCGCGGCTTGTGCACACTCGAAGACTCAGACAGCATTATCCA
CCGCCAGCGCAATGCAGATCGAAAATGTCAATTTCCTCCAAACCTTGAAT
CGACGATAATAACCTATGGTTGTAGGTGATATACGAAACCGATTTTCAAT
TTGTCTCTGAACATACGGCAAACAGCTTAACACACGAAAACGTGCTAGGC
AGATTACTACTACCAGCATATCGTCACGCTAATACGATTTTGGAAACCCA
CCAGTATCTACTGTTGGTTTCCTGAGTTTTAATGATCGCAAGAGCAAGCA
AATCGGCAAGATTGACTCAGATCTCGATACCTCGGCTTGTCCCTACCACG
GCAGACAGCTTTGTCAGCCGGACCTGCGGAAAACTTCACATCGCTGCAGT
TTGACTTCAACGTCAAGACTTTTTTAGGGAAGAAATAGGTCATCATGGCC
ATGGTGGCAAACGATCATCAGGCACAAAACGGCTGACGTCTGATCCAAGA
TATAATGCCAGCGTTCATTGTAATATAGATGGTGGAGGAGGCGAGCAGAC
CATGCGAGAAACTTCATGCGTAATAAATATTATCATTTCGGGAGAAAGAA
TGGCGCATCGTTTTAAGCCCCCTAAAGAAGTTAAAAGTCTAGAAAACTGA
CTGGCAAAAAAAAACATCTACCGGGATCTTTTAGAGAAAGGCATGTTCTT
ACACAGTGCATTGCGCTCCCGATGTTCTACTTGGAAGCGTTATTCCATTC
CTCGCCTGTTGTGTTGGTGGTGGTCATGGCGGTTATTATAGTGACCCGAG
TAGTGATGCATGTCAATTATAGTTTTCATATTTCTTACACCACAAAAAAA
AACTATGATGTGAATCAGGCAGAGAGATGGGTTGACCTCTCAAGAGACCG
CAGGCGGGATGGCAACGTTGCAGTCGTGAGATTGGTAGCCAAGCAAGTTG
GAGGGTACATCGAGAGAGAAGGAGAATCGAGAAATATAGTTCCACCCGTT
GAACACGAACTTTCCTATAGAAGACGCCCGCCAGACAGGATGGTGCACAA
CTAAAGGTGGCATGAAGGTTTGTAGTAAATTTGACTTCGGTTCGTTGCGG
GTATTGTTCCAATATAGCCATATATACTGGCGCCTGGCGCCTGCAAGGTT
GGCGTGATGTGAACATAAGAGCGCTATGTATGTGAAGCTCGTTTCTTTTC
GGGATGCTAAGGGGGAGGCTTGCCCACACATCGTTAGCTCCAGTATCATA
TGTTTTTTAATAATAATGCCGAAATAATCCAGTTGTACAACAAACTGGAT
CCGCTTTCTCCACAAACAGTAACATGTCAACGGGGCTCTTGTGATCAGTA
AGATTGTCATGGCGTGATGATGCCGTTCTTTGAAACACGTCTAATTGTTT
TAAAAGACAAGCATGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig8636:5873..8590-

>mRNA_H-elongata_contig8636.16202.1 ID=mRNA_H-elongata_contig8636.16202.1|Name=mRNA_H-elongata_contig8636.16202.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig8636:5873..8590- (Himanthalia elongata Himel1 dioecious)
ATGAAGATGTCCCGGATGGTTTACCGTACGGCCATTGCCATTATTTTTGT
GGCATCTACTCTACTTCTCCTGAGCTTACCGACGGTGGATGCCGTGAAAA
ACTCGCAGTTTACCATTTACGAGAGGCAGACCGAAGAAGGCCCTCGCCAC
AGTCCGCTCTTTACGCTACCCGTCGGGTGCGAAGAAGAGGAGTGTCCCTC
AAAAATGATTCTCTTCAGCAATGATCTGTATGGCTCAAAAGATGGCCTGA
TTGAGGAGGACCTCAACGAGCTCATCGGCTACAACCAGATGAAGATGTCC
CGGATGGTTTACCGTACGGCCATTGCCATTATTTTTGTGGCATCTACTCT
ACTTCTCCTGAGCTTACCGACGGTGGATGCCGTGAAAAACTCGCAGTTTA
CCATTTACGAGAGGCAGACCGAAGAAGGCCCTCGCCACAGTCCGCTCTTT
ACGCTACCCGTCGGGTGCGAAGAAGAGGAGTGTCCCTCAAAAATGATTCT
CTTCAGCAATGATCTGTATGGCTCAAAAGATGGCCTGATTGAGGAGGACC
TCAACGAGCTCATCGGCTACAACCAGGGTCACTGCATCGAGACTATGGTC
ACGGAAGGGTTGTTTGCCGAATGCTACTTCACGTTCGTGTTCGACGGCGG
CTCGATGACAGCAAACGGGCCGTTCAACTTCAGCGCCGATTCGTGGAGCG
TGGTCCCCTCTGTTCTAGCCGTCACCGGCGGTACCGGAAGCTACATGGGA
GCCAACGGAGAGGGTCACTGCATCGAGACTATGGTCACGGAAGGGTTGTT
TGCCGAATGCTACTTCACGTTCGTGTTCGACGGCGGCTCGATGACAGCAA
ACGGGCCGTTCAACTTCAGCGCCGATTCGTGGAGCGTGGTCCCCTCTGTT
CTAGCCGTCACCGGCGGTACCGGAAGCTACATGGGAGCCAACGGAGAGAC
AGCTTTGTCAGCCGGACCTGCGGAAAACTTCACATCGCTGCAGTTTGACT
TCAACGTCAAGACTTTTTTAGGGAAGAAATAGACAGCTTTGTCAGCCGGA
CCTGCGGAAAACTTCACATCGCTGCAGTTTGACTTCAACGTCAAGACTTT
TTTAGGGAAGAAATAG
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