mRNA_H-elongata_contig86270.16200.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86270.16200.1
Unique NamemRNA_H-elongata_contig86270.16200.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig86270.16200.1 vs. uniprot
Match: D7G2Q6_ECTSI (V-type proton ATPase subunit C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q6_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 9.280e-35
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 QLKTEVQQMHAGMIRWCRAHFGEAFSAWMHVKLIKSYCESVMRYGLPVDFSAFMLAPKKGQEAKVR 198
            QLKTEVQQ+HAGMIRWCRAHFGEAFSAWMHVKL+KSY ESVMRYGLPVDFSAF+LA KKGQEAKV+
Sbjct:  326 QLKTEVQQLHAGMIRWCRAHFGEAFSAWMHVKLVKSYVESVMRYGLPVDFSAFVLATKKGQEAKVK 391
[Close]
BLAST of mRNA_H-elongata_contig86270.16200.1 vs. uniprot
Match: A0A835Z1N8_9STRA (V-type proton ATPase subunit C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.470e-23
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 QLKTEVQQMHAGMIRWCRAHFGEAFSAWMHVKLIKSYCESVMRYGLPVDFSAFMLAPKKGQEAKV 195
            QLK E QQ+HAGM+RWC+AHFGEA  AWMH+KLI+ + ESV+RYGLPVDFS  ++   KG+EA V
Sbjct:  335 QLKLEAQQLHAGMLRWCKAHFGEAMIAWMHIKLIRGFVESVLRYGLPVDFSTLLVECAKGKEAAV 399
[Close]
BLAST of mRNA_H-elongata_contig86270.16200.1 vs. uniprot
Match: A0A8K1CMT2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMT2_PYTOL)

HSP 1 Score: 92.4 bits (228), Expect = 1.530e-20
Identity = 37/66 (56.06%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 QLKTEVQQMHAGMIRWCRAHFGEAFSAWMHVKLIKSYCESVMRYGLPVDFSAFMLAPKKGQEAKVR 198
            +L+ EV ++ +G+IRWC+AHFGE F AWMH+K+I+++ ESV+RYGLPV+F   M  P KG+E K+R
Sbjct:  306 ELEVEVDRLWSGLIRWCKAHFGETFIAWMHIKMIRTFVESVLRYGLPVNFVVVMYRPHKGKEKKLR 371
[Close]
BLAST of mRNA_H-elongata_contig86270.16200.1 vs. uniprot
Match: A0A397CBR0_9STRA (V-type proton ATPase subunit C n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CBR0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.880e-20
Identity = 35/66 (53.03%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 QLKTEVQQMHAGMIRWCRAHFGEAFSAWMHVKLIKSYCESVMRYGLPVDFSAFMLAPKKGQEAKVR 198
            +L+ EV ++++G++RWC+AHFGE F AWMHVK ++ + ESV+RYGLPV+F A +  PK G++ K+R
Sbjct:  196 ELEVEVNRLYSGLLRWCKAHFGETFIAWMHVKAVRVFVESVLRYGLPVNFVAMLFKPKAGRDKKLR 261
[Close]
BLAST of mRNA_H-elongata_contig86270.16200.1 vs. uniprot
Match: W4H5I3_9STRA (V-type proton ATPase subunit C n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H5I3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.490e-20
Identity = 35/66 (53.03%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 QLKTEVQQMHAGMIRWCRAHFGEAFSAWMHVKLIKSYCESVMRYGLPVDFSAFMLAPKKGQEAKVR 198
            +L+ EV ++++G++RWC+AHFGE F AWMHVK ++ + ESV+RYGLPV+F A +  PK G++ K+R
Sbjct:  306 ELEVEVNRLYSGLLRWCKAHFGETFIAWMHVKAVRVFVESVLRYGLPVNFVAMLFKPKAGRDKKLR 371
[Close]
BLAST of mRNA_H-elongata_contig86270.16200.1 vs. uniprot
Match: A0A485LS38_9STRA (V-type proton ATPase subunit C n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS38_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.490e-20
Identity = 36/66 (54.55%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 QLKTEVQQMHAGMIRWCRAHFGEAFSAWMHVKLIKSYCESVMRYGLPVDFSAFMLAPKKGQEAKVR 198
            +L+ EV +++ G++RWC+AHFGE F AWMHVK I+ + ESV+RYGLPV+F A +  PK G+E ++R
Sbjct:  306 ELEVEVNRLYTGLLRWCKAHFGETFIAWMHVKAIRVFVESVLRYGLPVNFVALLYKPKSGKEKRLR 371
[Close]
BLAST of mRNA_H-elongata_contig86270.16200.1 vs. uniprot
Match: K0TLZ5_THAOC (V-type proton ATPase subunit C (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLZ5_THAOC)

HSP 1 Score: 88.6 bits (218), Expect = 6.110e-20
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 QLKTEVQQMHAGMIRWCRAHFGEAFSAWMHVKLIKSYCESVMRYGLPVDFSAFMLAPKKGQEAKV 195
            QL+ EV  M +G+ RWC+ H+GEAF AWMHVK+I+ + ESV+RYGLPVDF+A +     G+EAK+
Sbjct:  151 QLQVEVDNMRSGLTRWCKTHYGEAFVAWMHVKVIRVFVESVLRYGLPVDFTAVLYKVGSGKEAKL 215
[Close]
BLAST of mRNA_H-elongata_contig86270.16200.1 vs. uniprot
Match: A0A7S1BQE7_9STRA (V-type proton ATPase subunit C (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BQE7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.260e-20
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 QLKTEVQQMHAGMIRWCRAHFGEAFSAWMHVKLIKSYCESVMRYGLPVDFSAFMLAPKKGQE 186
            Q++ EV+ M  G+ RWCR H+GEAF AWMH+K+I+ + ESV+RYGLPVDF+A +   KKG+E
Sbjct:  236 QMQVEVEGMKTGLTRWCRTHYGEAFVAWMHIKVIRVFVESVLRYGLPVDFTAVLYMTKKGKE 297
[Close]
BLAST of mRNA_H-elongata_contig86270.16200.1 vs. uniprot
Match: A0A6G0WZK4_9STRA (V-type proton ATPase subunit C n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZK4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.450e-19
Identity = 35/66 (53.03%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 QLKTEVQQMHAGMIRWCRAHFGEAFSAWMHVKLIKSYCESVMRYGLPVDFSAFMLAPKKGQEAKVR 198
            +L+ EV +++ G++RWC+AHFGE F AWMHVK ++ + ESV+RYGLPV+F A +  PK G++ K+R
Sbjct:  306 ELEVEVNRLYTGLLRWCKAHFGETFIAWMHVKAVRVFVESVLRYGLPVNFVAVLYKPKAGKDKKLR 371
[Close]
BLAST of mRNA_H-elongata_contig86270.16200.1 vs. uniprot
Match: A0A7S1FWB8_9STRA (V-type proton ATPase subunit C (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWB8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.360e-19
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 QLKTEVQQMHAGMIRWCRAHFGEAFSAWMHVKLIKSYCESVMRYGLPVDFSAFMLAPKKGQE 186
            Q++ EV+ M  G+ RWCR H+GEAF AWMH+K+I+ + ESV+RYGLPVDF+A +   KKG+E
Sbjct:  327 QMQVEVEGMKTGLTRWCRTHYGEAFVAWMHIKVIRVFVESVLRYGLPVDFTAVLYMTKKGKE 388
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86270.16200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Q6_ECTSI9.280e-3590.91V-type proton ATPase subunit C n=2 Tax=Ectocarpus ... [more]
A0A835Z1N8_9STRA1.470e-2366.15V-type proton ATPase subunit C n=1 Tax=Tribonema m... [more]
A0A8K1CMT2_PYTOL1.530e-2056.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A397CBR0_9STRA1.880e-2053.03V-type proton ATPase subunit C n=6 Tax=Aphanomyces... [more]
W4H5I3_9STRA5.490e-2053.03V-type proton ATPase subunit C n=2 Tax=Aphanomyces... [more]
A0A485LS38_9STRA5.490e-2054.55V-type proton ATPase subunit C n=1 Tax=Aphanomyces... [more]
K0TLZ5_THAOC6.110e-2056.92V-type proton ATPase subunit C (Fragment) n=1 Tax=... [more]
A0A7S1BQE7_9STRA9.260e-2058.06V-type proton ATPase subunit C (Fragment) n=1 Tax=... [more]
A0A6G0WZK4_9STRA1.450e-1953.03V-type proton ATPase subunit C n=1 Tax=Aphanomyces... [more]
A0A7S1FWB8_9STRA2.360e-1958.06V-type proton ATPase subunit C (Fragment) n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86270contigH-elongata_contig86270:94..291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D7G2Q6
Preferred nameATP6V1C2
KEGG koko:K02148
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
GOsGO:0000003,GO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0000902,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007292,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008553,GO:0009507,GO:0009536,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009826,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010506,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0019953,GO:0022414,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030004,GO:0030111,GO:0030177,GO:0030641,GO:0030728,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032869,GO:0032870,GO:0032989,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033572,GO:0034220,GO:0036442,GO:0040007,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044769,GO:0045177,GO:0045184,GO:0045851,GO:0046961,GO:0046983,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048589,GO:0048609,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0060560,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.proton-exporting ATPase activity, phosphorylative mechanism
EggNOG OGsCOG5127@1,KOG2909@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size198
Cds size174
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931265.018255-UTR-H-elongata_contig86270:93..1171622931265.018255-UTR-H-elongata_contig86270:93..117Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86270 94..117 +
1691679765.4991393-UTR-H-elongata_contig86270:93..1171691679765.4991393-UTR-H-elongata_contig86270:93..117Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86270 94..117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931265.0316958-CDS-H-elongata_contig86270:117..2911622931265.0316958-CDS-H-elongata_contig86270:117..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86270 118..291 +
1691679765.5279336-CDS-H-elongata_contig86270:117..2911691679765.5279336-CDS-H-elongata_contig86270:117..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86270 118..291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86270.16200.1prot_H-elongata_contig86270.16200.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86270 118..291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86270.16200.1

>prot_H-elongata_contig86270.16200.1 ID=prot_H-elongata_contig86270.16200.1|Name=mRNA_H-elongata_contig86270.16200.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MHAGMIRWCRAHFGEAFSAWMHVKLIKSYCESVMRYGLPVDFSAFMLAPK
KGQEAKVR
back to top

mRNA from alignment at H-elongata_contig86270:94..291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86270.16200.1 ID=mRNA_H-elongata_contig86270.16200.1|Name=mRNA_H-elongata_contig86270.16200.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig86270:94..291+ (Himanthalia elongata Himel1 dioecious)
CAGCTGAAGACCGAGGTGCAACAGATGCACGCGGGCATGATCCGTTGGTG
CCGCGCTCACTTCGGCGAGGCGTTTTCCGCTTGGATGCACGTTAAGCTTA
TCAAGTCGTACTGTGAGAGCGTCATGCGCTACGGGCTCCCCGTGGACTTT
TCGGCCTTCATGCTCGCGCCCAAGAAGGGGCAAGAGGCGAAGGTACGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig86270:94..291+

>mRNA_H-elongata_contig86270.16200.1 ID=mRNA_H-elongata_contig86270.16200.1|Name=mRNA_H-elongata_contig86270.16200.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig86270:94..291+ (Himanthalia elongata Himel1 dioecious)
ATGCACGCGGGCATGATCCGTTGGTGCCGCGCTCACTTCGGCGAGGCGTT
TTCCGCTTGGATGCACGTTAAGCTTATCAAGTCGTACTGTGAGAGCGTCA
TGCGCTACGGGCTCCCCGTGGACTTTTCGGCCTTCATGCTCGCGCCCAAG
AAGGGGCAAGAGGCGAAGGTACGCATGCACGCGGGCATGATCCGTTGGTG
CCGCGCTCACTTCGGCGAGGCGTTTTCCGCTTGGATGCACGTTAAGCTTA
TCAAGTCGTACTGTGAGAGCGTCATGCGCTACGGGCTCCCCGTGGACTTT
TCGGCCTTCATGCTCGCGCCCAAGAAGGGGCAAGAGGCGAAGGTACGC
back to top