mRNA_H-elongata_contig86192.16195.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86192.16195.1
Unique NamemRNA_H-elongata_contig86192.16195.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig86192.16195.1 vs. uniprot
Match: A0A6H5JIN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN4_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.820e-36
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 1
Query:   16 ERLLVSETTDHFLWIVIVGGFGAFFAAFGIGANDVANAFATSVGAKAVTLRQAIVLAGIAEFLGAVLLGNHVSKAVRESIVD 261
            ER+LV ETTD FLWI+IVG FGAFFAAFGIGANDVANAFATSVGAKA+T++QA++LAGI EFLGAV LG+HV+K +R  I D
Sbjct:    8 ERILVPETTDQFLWILIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVILAGIFEFLGAVFLGSHVTKTIRSGIAD 89          
BLAST of mRNA_H-elongata_contig86192.16195.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 5.310e-34
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 1
Query:   16 ERLLVSETTDHFLWIVIVGGFGAFFAAFGIGANDVANAFATSVGAKAVTLRQAIVLAGIAEFLGAVLLGNHVSKAVRESIVD 261
            ER+L  ETTDHFLWIVIVG FGAFFAAFGIGANDVANAFATSVGAKA+T++QA+VLAGI EFLGAV LG+HV+K +R  I D
Sbjct:    8 ERILAPETTDHFLWIVIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVFLGSHVTKTIRSGIAD 89          
BLAST of mRNA_H-elongata_contig86192.16195.1 vs. uniprot
Match: D7G5U7_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U7_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 2.470e-33
Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 1
Query:   16 ERLLVSETTDHFLWIVIVGGFGAFFAAFGIGANDVANAFATSVGAKAVTLRQAIVLAGIAEFLGAVLLGNHVSKAVRESIVD 261
            ER+L  E TD FLWI+IV  FGAFFAAFGIGANDVANAFATSVGAKA+T++QA+VLAG+ EFLGAV LG+HV+K +R+ I D
Sbjct:   33 ERILAPEATDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGVFEFLGAVFLGSHVTKTIRKGIAD 114          
BLAST of mRNA_H-elongata_contig86192.16195.1 vs. uniprot
Match: D8LJQ3_ECTSI (Pho4 high affinity phosphate transporter, probable (IC) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ3_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.610e-31
Identity = 58/81 (71.60%), Postives = 72/81 (88.89%), Query Frame = 1
Query:   19 RLLVSETTDHFLWIVIVGGFGAFFAAFGIGANDVANAFATSVGAKAVTLRQAIVLAGIAEFLGAVLLGNHVSKAVRESIVD 261
            R+L  E +D +LWIV+VG FG+F AAFGIGANDVANAF+TSVGA+AVTL+QAIVLAG+ EFLGA+LLG  V+KA+RE+IV+
Sbjct:    8 RMLAPEASDQWLWIVVVGAFGSFLAAFGIGANDVANAFSTSVGARAVTLKQAIVLAGVFEFLGALLLGAPVTKAIRENIVN 88          
BLAST of mRNA_H-elongata_contig86192.16195.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 5.070e-30
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 1
Query:   16 ERLLVSETTDHFLWIVIVGGFGAFFAAFGIGANDVANAFATSVGAKAVTLRQAIVLAGIAEFLGAVLLGNHVSKAVRESIVD 261
            ER+L  +TT+ FLWI+IVG FGAFFAAFGIGANDVANAFATSVGAKA+TLRQA+VLAGI EFLGAV LG+HV+  +R    D
Sbjct:    8 ERILAPDTTNGFLWILIVGTFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTSTIRSGTAD 89          
BLAST of mRNA_H-elongata_contig86192.16195.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.830e-29
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 1
Query:   16 ERLLVSETTDHFLWIVIVGGFGAFFAAFGIGANDVANAFATSVGAKAVTLRQAIVLAGIAEFLGAVLLGNHVSKAVRESIVD 261
            ER+L  ETTD +LWI+IV  FGAFFAAFGIGANDVANAFATSVGAKA+T++QA+VLA I EF GAV LG+HV+K +R+ I D
Sbjct:    7 ERILAPETTDQWLWILIVASFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAAIFEFAGAVFLGSHVTKTIRKGIAD 88          
BLAST of mRNA_H-elongata_contig86192.16195.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 9.190e-27
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 1
Query:   16 ERLLVSETTDHFLWIVIVGGFGAFFAAFGIGANDVANAFATSVGAKAVTLRQAIVLAGIAEFLGAVLLGNHVSKAVRESIVD 261
            ER+L    T  FLWIVIV   GA FAAFGIGAND+ANAFATSVGA+A+T++QA+VLAG+ EFLGAV LG+HV+K +R  I D
Sbjct:    8 ERILAPAVTSEFLWIVIVSSIGAVFAAFGIGANDLANAFATSVGARALTIKQAVVLAGVFEFLGAVFLGSHVAKTIRSGIAD 89          
BLAST of mRNA_H-elongata_contig86192.16195.1 vs. uniprot
Match: A0A6U1NDP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NDP7_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.030e-25
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 1
Query:   43 DHFLWIVIVGGFGAFFAAFGIGANDVANAFATSVGAKAVTLRQAIVLAGIAEFLGAVLLGNHVSKAVRESIVD 261
            D +LWIVIVGGF A F A+GIGANDVANAF+TSVGAK +TL+QA++L GI EFLGA L G+HV+K +R+ I D
Sbjct:    7 DDYLWIVIVGGFLAVFTAYGIGANDVANAFSTSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGIAD 79          
BLAST of mRNA_H-elongata_contig86192.16195.1 vs. uniprot
Match: D8LJQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ0_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.210e-23
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1
Query:   16 ERLLVSETTDHFLWIVIVGGFGAFFAAFGIGANDVANAFATSVGAKAVTLRQAIVLAGIAEFLGAVLLGNHVSKAVRESIVD 261
            +R+L  E T  +LWIV V   GA  AA GIGANDVAN+FATSVG+KA+TL++A++LAGI EF GA+LLG     A+ ESI D
Sbjct:    8 QRVLAPEATGQWLWIVSVASLGALCAALGIGANDVANSFATSVGSKALTLKKALLLAGICEFFGALLLGRQAMTAISESIAD 89          
BLAST of mRNA_H-elongata_contig86192.16195.1 vs. uniprot
Match: A0A7S2V1L4_9STRA (Phosphate transporter n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1L4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.500e-23
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 1
Query:   43 DHFLWIVIVGGFGAFFAAFGIGANDVANAFATSVGAKAVTLRQAIVLAGIAEFLGAVLLGNHVSKAVRESIVD 261
            D +LWIVIVGGF A F A+GIGANDVANAF+TSVGAK +TL+QA++L GI EFLGA L G+HV+K +R+ I D
Sbjct:    7 DDYLWIVIVGGFLAVFTAYGIGANDVANAFSTSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGIAD 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86192.16195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIN4_9PHAE1.820e-3676.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0K9_ECTSI5.310e-3479.27Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
D7G5U7_ECTSI2.470e-3373.17High affinity phosphate transporter n=1 Tax=Ectoca... [more]
D8LJQ3_ECTSI1.610e-3171.60Pho4 high affinity phosphate transporter, probable... [more]
D7FZJ7_ECTSI5.070e-3074.39Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JNE7_9PHAE1.830e-2971.95Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FWT9_ECTSI9.190e-2767.07Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A6U1NDP7_9STRA4.030e-2568.49Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D8LJQ0_ECTSI2.210e-2359.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V1L4_9STRA3.500e-2368.49Phosphate transporter n=1 Tax=Fibrocapsa japonica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86192contigH-elongata_contig86192:1420..1680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.6e-28
Seed eggNOG ortholog2880.D7G0K9
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionPhosphate transporter
Ec32 orthologEc-17_002900.1
Exons1
Model size261
Cds size261
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931264.6685593-CDS-H-elongata_contig86192:1419..16801622931264.6685593-CDS-H-elongata_contig86192:1419..1680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86192 1420..1680 -
1691679765.3050818-CDS-H-elongata_contig86192:1419..16801691679765.3050818-CDS-H-elongata_contig86192:1419..1680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86192 1420..1680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86192.16195.1prot_H-elongata_contig86192.16195.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86192 1420..1680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86192.16195.1

>prot_H-elongata_contig86192.16195.1 ID=prot_H-elongata_contig86192.16195.1|Name=mRNA_H-elongata_contig86192.16195.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MSIPHERLLVSETTDHFLWIVIVGGFGAFFAAFGIGANDVANAFATSVGA
KAVTLRQAIVLAGIAEFLGAVLLGNHVSKAVRESIVD
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mRNA from alignment at H-elongata_contig86192:1420..1680-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86192.16195.1 ID=mRNA_H-elongata_contig86192.16195.1|Name=mRNA_H-elongata_contig86192.16195.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig86192:1420..1680- (Himanthalia elongata Himel1 dioecious)
ATGAGTATCCCCCATGAGCGTCTTCTCGTCTCAGAAACGACCGATCACTT TCTTTGGATCGTCATCGTGGGTGGATTCGGGGCATTTTTCGCTGCTTTCG GAATCGGCGCAAACGATGTAGCCAACGCGTTCGCCACCTCCGTTGGGGCC AAGGCCGTGACGTTAAGGCAAGCAATCGTCCTGGCAGGAATTGCCGAGTT TCTGGGCGCCGTTCTCCTGGGAAACCACGTCAGCAAGGCCGTCCGCGAGT CCATAGTCGAT
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Coding sequence (CDS) from alignment at H-elongata_contig86192:1420..1680-

>mRNA_H-elongata_contig86192.16195.1 ID=mRNA_H-elongata_contig86192.16195.1|Name=mRNA_H-elongata_contig86192.16195.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig86192:1420..1680- (Himanthalia elongata Himel1 dioecious)
ATGAGTATCCCCCATGAGCGTCTTCTCGTCTCAGAAACGACCGATCACTT
TCTTTGGATCGTCATCGTGGGTGGATTCGGGGCATTTTTCGCTGCTTTCG
GAATCGGCGCAAACGATGTAGCCAACGCGTTCGCCACCTCCGTTGGGGCC
AAGGCCGTGACGTTAAGGCAAGCAATCGTCCTGGCAGGAATTGCCGAGTT
TCTGGGCGCCGTTCTCCTGGGAAACCACGTCAGCAAGGCCGTCCGCGAGT
CCATAGTCGATATGAGTATCCCCCATGAGCGTCTTCTCGTCTCAGAAACG
ACCGATCACTTTCTTTGGATCGTCATCGTGGGTGGATTCGGGGCATTTTT
CGCTGCTTTCGGAATCGGCGCAAACGATGTAGCCAACGCGTTCGCCACCT
CCGTTGGGGCCAAGGCCGTGACGTTAAGGCAAGCAATCGTCCTGGCAGGA
ATTGCCGAGTTTCTGGGCGCCGTTCTCCTGGGAAACCACGTCAGCAAGGC
CGTCCGCGAGTCCATAGTCGAT
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