mRNA_H-elongata_contig86182.16194.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86182.16194.1
Unique NamemRNA_H-elongata_contig86182.16194.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86182.16194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86182contigH-elongata_contig86182:1320..2398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86182.16194.1prot_H-elongata_contig86182.16194.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86182 1374..2398 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931264.5116875-UTR-H-elongata_contig86182:1319..13731622931264.5116875-UTR-H-elongata_contig86182:1319..1373Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86182 1320..1373 +
1691679765.2448902-UTR-H-elongata_contig86182:1319..13731691679765.2448902-UTR-H-elongata_contig86182:1319..1373Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86182 1320..1373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931264.5507982-CDS-H-elongata_contig86182:1373..14861622931264.5507982-CDS-H-elongata_contig86182:1373..1486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86182 1374..1486 +
1691679765.2539606-CDS-H-elongata_contig86182:1373..14861691679765.2539606-CDS-H-elongata_contig86182:1373..1486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86182 1374..1486 +
1622931264.5681643-CDS-H-elongata_contig86182:2205..23981622931264.5681643-CDS-H-elongata_contig86182:2205..2398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86182 2206..2398 +
1691679765.2765315-CDS-H-elongata_contig86182:2205..23981691679765.2765315-CDS-H-elongata_contig86182:2205..2398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86182 2206..2398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86182.16194.1

>prot_H-elongata_contig86182.16194.1 ID=prot_H-elongata_contig86182.16194.1|Name=mRNA_H-elongata_contig86182.16194.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MAMKLSKEKYLSLEGEGRSSGLNLSGYSCPTIKRMIWWVSAVTRVKVRWS
YSRLGRPYCARRLFSAETDAFTCFTLVWSGDDLRCAISGIIREDDCVRFS
LG
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mRNA from alignment at H-elongata_contig86182:1320..2398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86182.16194.1 ID=mRNA_H-elongata_contig86182.16194.1|Name=mRNA_H-elongata_contig86182.16194.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1079bp|location=Sequence derived from alignment at H-elongata_contig86182:1320..2398+ (Himanthalia elongata Himel1 dioecious)
AGTTTTTGCAGGGGCTACATATTTTAACACAGCGGCTTCTGTGAAAGGAG
GCATATGGCCATGAAGCTCTCGAAGGAGAAATATTTATCGCTGGAAGGAG
AGGGTCGATCGAGCGGGCTCAATTTGAGTGGTTACTCCTGTCCGACGATA
AAGAGGATGATATGGTGGTCAGTACAGCAGGGAGAACTAGCAGGCGTTCT
TGTATCCCTGTTCAGTTGCAGCACCCTCCTCCCTGGGTCTCGACGTTGGT
CGGGTACTTGAGATACTAGAGATACTATAAATATATTAGAGATACTAGAT
AAATACTGATTGGTCCAGGATAGAACAGAAAGTTTCCGTATGGCTTACGA
CAGGTACGTTACCCCAAAGTAGTGCAGTAAATCACTGGGCCGCAGCTCTA
GAAAGCTCTACCGATGTATGCAACATTGGTAAAAAGTATCAGACTTGCTT
TTTTAGTGGTCTACACGCTAAATCTCGCCCTTTCAATAATATAGTATACC
AGTACAGTAATGTATTGGATACCCTCGATACTTCGTGTAAATCCACCCGG
CGCAACCTCGTATTGTACTCTGAAGGAATTAGAAGGCGCACGTGACAAGT
CCATGCTTGCCCCATAATCAAAACGCGTGATGGCAAACAATAGGTTCATT
AGAAACGTTTTCGGCAGATCTCTTGAAAAATCCCCGCTGCTGCCACCGTA
GAAACGAACGAATTCCCGTTTTAGGAGGAAGCACATCGAATATTTATGTA
CAGTCAGATGGATGCACCACATCGCATGAGAAGTGTGGCTGGCGATACGT
AGTCTATTACTAAACATCAATTCATGGTCCTCGCGCGTGCGCCGTGCCCC
CTCCGATGTTTGCCCTCGCCCATGGAACTGCACTAGGGTTTCCGCGGTAA
CCAGAGTCAAAGTAAGATGGTCCTACAGTCGACTCGGTCGGCCATACTGT
GCACGCCGCTTGTTTTCCGCCGAAACAGACGCGTTTACCTGTTTCACACT
CGTGTGGAGTGGTGACGATTTACGATGCGCCATCAGCGGGATTATTCGAG
AGGACGATTGCGTCCGTTTTTCCTTGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig86182:1320..2398+

>mRNA_H-elongata_contig86182.16194.1 ID=mRNA_H-elongata_contig86182.16194.1|Name=mRNA_H-elongata_contig86182.16194.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig86182:1320..2398+ (Himanthalia elongata Himel1 dioecious)
ATGGCCATGAAGCTCTCGAAGGAGAAATATTTATCGCTGGAAGGAGAGGG
TCGATCGAGCGGGCTCAATTTGAGTGGTTACTCCTGTCCGACGATAAAGA
GGATGATATGGTGATGGCCATGAAGCTCTCGAAGGAGAAATATTTATCGC
TGGAAGGAGAGGGTCGATCGAGCGGGCTCAATTTGAGTGGTTACTCCTGT
CCGACGATAAAGAGGATGATATGGTGGGTTTCCGCGGTAACCAGAGTCAA
AGTAAGATGGTCCTACAGTCGACTCGGTCGGCCATACTGTGCACGCCGCT
TGTTTTCCGCCGAAACAGACGCGTTTACCTGTTTCACACTCGTGTGGAGT
GGTGACGATTTACGATGCGCCATCAGCGGGATTATTCGAGAGGACGATTG
CGTCCGTTTTTCCTTGGGGGGTTTCCGCGGTAACCAGAGTCAAAGTAAGA
TGGTCCTACAGTCGACTCGGTCGGCCATACTGTGCACGCCGCTTGTTTTC
CGCCGAAACAGACGCGTTTACCTGTTTCACACTCGTGTGGAGTGGTGACG
ATTTACGATGCGCCATCAGCGGGATTATTCGAGAGGACGATTGCGTCCGT
TTTTCCTTGGGG
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