mRNA_H-elongata_contig86109.16187.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86109.16187.1
Unique NamemRNA_H-elongata_contig86109.16187.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 352 bits (902), Expect = 6.350e-113
Identity = 179/260 (68.85%), Postives = 201/260 (77.31%), Query Frame = 1
Query:    4 LDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
            +DIWTDKGS RKFL  HV+YV ANFELKD LLSIKRY+PDQG+LG  +AS+VL +I KS+L EFGL PS+LASGTTDSGSDVKAVS N LW  +                            SKNP ARD+LK V+KVVE LNKS N +AKFEDLQVD+LGE+FK+VKHAPQRWLSLTRT+ER IRLWHVLR+LYSDEG+NFPLEEGD KD ILQLYSLLQPLSSITRDGQYG APM A+IFMKF  L T VLD S+ L+
Sbjct:  261 IDIWTDKGSGRKFLGLHVFYVDANFELKDALLSIKRYAPDQGSLGDQRASDVLFQIMKSVLEEFGLKPSHLASGTTDSGSDVKAVSTNCLWPMYAVLWCWCFCHLMVKAAEQAYGIHLDPAKSKNPQARDILKKVVKVVENLNKSPNFKAKFEDLQVDMLGEIFKMVKHAPQRWLSLTRTVERTIRLWHVLRKLYSDEGRNFPLEEGDTKDAILQLYSLLQPLSSITRDGQYGDAPMMADIFMKFGMLNTDVLDPSKDLK 520          
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 6.930e-102
Identity = 166/261 (63.60%), Postives = 193/261 (73.95%), Query Frame = 1
Query:    1 MLDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
            M+DIW DK S RKFL  HV+YVTANFELK  LLSIKRY P Q ALG+AKA+EVLLEI ++ILHEFG  PS+LASGTTDSGSDVK+VS+NGL  ++G                           SKNP A ++LK +I +V TL+KS NL AKFEDLQVDLLGEV K+   APQRWL+L RT+ER+IRLWHVLR+LYSD GKNF LEEGDNKD I QLYSLLQ LSS+TRDGQYGG PM A+I++KF  LK  VL+ S  L+
Sbjct:   16 MIDIWADKPSGRKFLGVHVFYVTANFELKQTLLSIKRYRPSQDALGEAKAAEVLLEILEAILHEFGRRPSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMIKAAEDAFGTHPDPQKSKNPEAHNMLKNLIGIVGTLHKSLNLTAKFEDLQVDLLGEVLKIPNQAPQRWLTLVRTMERVIRLWHVLRKLYSDAGKNFILEEGDNKDCIPQLYSLLQSLSSVTRDGQYGGLPMLADIYIKFGMLKMGVLNSSADLK 276          
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 2.620e-95
Identity = 159/261 (60.92%), Postives = 188/261 (72.03%), Query Frame = 1
Query:    1 MLDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
            M+DIW DK S RKFL  HV+YVTANFELK  LLS         ALG+ KA+EVLLEI ++IL+EFGL PS+LASGTTDSGSDVK+VS+NGL  ++G                           SKNP AR++LK +I ++ TL+KS NL AKFEDLQVDLLGEV  +   APQRWL+L RT+ER+IRLW V+R+LYSD GKNFPLEEGDNKD I QLYSLLQPLSS+TRDGQYGG PM A+I+MKF  LK  VL+ S  L+
Sbjct:   16 MIDIWADKPSGRKFLGVHVFYVTANFELKQTLLS--------DALGEVKAAEVLLEILEAILNEFGLRPSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLK 267          
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 290 bits (741), Expect = 1.240e-93
Identity = 153/250 (61.20%), Postives = 179/250 (71.60%), Query Frame = 1
Query:    1 MLDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLK 669
            M+DIWTDK S RKFL  H++YVTANFELK  L+S             AKA+EVLL+I +S+LHEFGL  S+LASGTTDSGSDVK+VS+NGL  ++G                           SKNP  R +LK VI +V TL+KS NL AKFED+QVDLLGE+ K+   APQRWL+L RTLER+IRLWHVLR+L+SD GK FPLEEGDNKD ILQLYSLLQPLSS+TRDGQYGG PM A+I+MKF  LK
Sbjct:  186 MIDIWTDKPSGRKFLGVHLFYVTANFELKQALIS-------------AKAAEVLLKILESVLHEFGLRASDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCCCHLMVKAAEDAFGTHPDPQKSKNPEGRKMLKNVIGMVGTLHKSPNLTAKFEDVQVDLLGEILKIPNQAPQRWLTLVRTLERVIRLWHVLRKLHSDAGKTFPLEEGDNKDCILQLYSLLQPLSSVTRDGQYGGVPMMADIYMKFGMLK 422          
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 1.680e-93
Identity = 150/227 (66.08%), Postives = 173/227 (76.21%), Query Frame = 1
Query:  103 IKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
            IKRYSP Q ALG+A ASEVLLEIFKSIL EFGL PS+LASGTTDSGSDVK+ S+NGL+ Q+G                           SKNP ARD+LK VI +V TLN+SSN +AKFEDLQVDLLG+V K+   APQRWL+  RTLER+IRLWHVLR+LYSD GKNFPLEEGDNK+ ILQL+SLLQ LSS+TRDGQYG APM A++FMKF  LK +VLD S+PL+
Sbjct:   10 IKRYSPSQDALGEAAASEVLLEIFKSILREFGLRPSDLASGTTDSGSDVKSASVNGLYPQYGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKNVISMVGTLNRSSNFKAKFEDLQVDLLGDVLKIPNQAPQRWLTQVRTLERVIRLWHVLRKLYSDAGKNFPLEEGDNKNAILQLFSLLQSLSSVTRDGQYGNAPMQADVFMKFGELKMEVLDPSKPLK 236          
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 8.120e-89
Identity = 160/230 (69.57%), Postives = 161/230 (70.00%), Query Frame = 1
Query:   91 VLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG--------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
            +L   KRYSPDQGALGQAKASEVLL IFKSILHEFGLNPS LASGTTDSGSDVKAVSINGLWK FG                          SKNPAARDLLKTVIKVVETLNKSSNL AKFEDLQVDLLGEVFKVVKHAPQRWL LTRTLERIIRLWH                                PLSSITRD QYGGAPMTAEIFMKFA LKT VLDMSEPLR
Sbjct:    1 MLFKSKRYSPDQGALGQAKASEVLLVIFKSILHEFGLNPSYLASGTTDSGSDVKAVSINGLWKHFGVLWNWCFCHLMKAAEQPFCTSLDTVKSKNPAARDLLKTVIKVVETLNKSSNLGAKFEDLQVDLLGEVFKVVKHAPQRWLGLTRTLERIIRLWH--------------------------------PLSSITRDVQYGGAPMTAEIFMKFATLKTNVLDMSEPLR 198          
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 3.470e-83
Identity = 147/261 (56.32%), Postives = 169/261 (64.75%), Query Frame = 1
Query:    1 MLDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
            M+DIWTDKGS RK L                        P  G         VLLEI K+ILHEFGL  S+LASGT DSGSDVK+VS NGL  QFG                           SKNP ARD+LK +I +V TL++SSN +AKF+DLQVD+LGEV K+   AP+RWL+L RTLER+IRLWHVLR+LYSD GK FPLEEGDNKD ILQLYSLLQP SS+TRDGQYGGAPM A+I+MK   LK +VLD SE L+
Sbjct:   57 MIDIWTDKGSGRKTLWER---------------------PRPG---------VLLEIVKAILHEFGLRTSDLASGTADSGSDVKSVSFNGLHPQFGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKKLINLVGTLHRSSNFKAKFDDLQVDVLGEVLKIPNQAPKRWLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPPSSVTRDGQYGGAPMLADIYMKCGMLKMRVLDPSEELK 287          
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5JTT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT2_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 3.800e-78
Identity = 139/227 (61.23%), Postives = 158/227 (69.60%), Query Frame = 1
Query:  103 IKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
            IKRY P Q A+G+AKASEVLLEI  +ILHEFGL PS+LASGTTDSG DVK+VS+NGL  QFG                           SKNP ARD+LK +I +V TL++SSN +AKF DLQVD+ GEVF     APQRWL+L  TLER+IRLWHVLR+LYSD GK FPLEEGD  D ILQL SLLQPLSS+TRDGQYGGAPM          LK +VLD SE L+
Sbjct:   18 IKRYQPSQDAVGEAKASEVLLEIVNAILHEFGLRPSDLASGTTDSGLDVKSVSVNGLHPQFGVLWNCCFYHLMVKAAEDGFGTHVDPQKSKNPKARDMLKKLINLVGTLHRSSNFKAKFGDLQVDVWGEVFP--NQAPQRWLTLVPTLERVIRLWHVLRKLYSDTGKTFPLEEGDITDCILQLNSLLQPLSSVTRDGQYGGAPM----------LKMRVLDPSEELK 232          
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 1.590e-77
Identity = 129/249 (51.81%), Postives = 172/249 (69.08%), Query Frame = 1
Query:    4 LDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSIN---GLWK-----------------QFG-------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLK 669
            LD+WT K S RK+L  HV+YV +NF L+  L+S+K Y+P     G  KASE+L  IF++ L E+G+  S+LA GTTDSGSDVKA+ +N   GL K                  FG       SKN  ARD++K VIK    +N+S+ ++ KFE + +++L E+ K+ KHAPQRWLSL   +ERIIRLWHVLR++Y+++G+ FPL++G+N+D ILQLYSLLQPLS+ITRDGQYG APMTAE+ + FA LK
Sbjct:  225 LDLWTCKVSGRKYLGVHVFYVDSNFSLRHALISVKHYAPSTEIQGTEKASEILFTIFRATLAEYGIKLSDLAGGTTDSGSDVKAMCVNILLGLHKIWWDWCDCHLADKSAENTFGTSADPQQSKNKIARDVIKLVIKTAAKINQSTIVKQKFEKVTLEMLDEILKITKHAPQRWLSLVLVMERIIRLWHVLRKVYANDGEEFPLDKGNNRDDILQLYSLLQPLSAITRDGQYGNAPMTAEMHLAFAQLK 473          
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 1.210e-73
Identity = 160/390 (41.03%), Postives = 189/390 (48.46%), Query Frame = 1
Query:    1 MLDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKASEVLLEIFKSILHEFGLNPSNLASGTTD---------------------------------------------------------------------------------------------------------------------------------SGSDVKAVSINGLWKQFG---------------------------SKNPAARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLSLTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSITRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR 702
            M+DIW DK S RKFL  HV+YVTANFELK  LLS         ALG+AKA+EVL+EI ++ILHEFGL PS+LASGTTD                                                                                                                                 SGSDVK+VS+NGL  ++G                           SKNP AR++LK +I ++ TL+KS NL AKFEDLQVDLLGEV  +   APQRWL+L RT+ER+IRLW V+R+LYSD GKNFPLEEGDNKD I QLYSLLQPLSS+TRDGQYGG PM A+I+MKF  LK  VL+ S  L+
Sbjct:   16 MIDIWADKPSGRKFLGVHVFYVTANFELKQTLLS--------DALGEAKAAEVLVEILEAILHEFGLRPSDLASGTTDKRYRPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSVTRDGQYGGLPMLADIYMKFGMLKMGVLNSSADLK 396          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86109.16187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE6.350e-11368.85Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE6.930e-10263.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ66_9PHAE2.620e-9560.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS21_9PHAE1.240e-9361.20Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KEE6_9PHAE1.680e-9366.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8W6_9PHAE8.120e-8969.57Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L8D8_9PHAE3.470e-8356.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT2_9PHAE3.800e-7861.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYQ2_9PHAE1.590e-7751.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P1_9PHAE1.210e-7341.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86109contigH-elongata_contig86109:579..1712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue4.5e-17
Seed eggNOG ortholog2880.D7G4Z8
EggNOG OGs2CZK4@1,2SARG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size702
Cds size702
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86109.16187.1prot_H-elongata_contig86109.16187.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86109 579..1712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931263.9188147-CDS-H-elongata_contig86109:578..9921622931263.9188147-CDS-H-elongata_contig86109:578..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86109 579..992 -
1691679765.068245-CDS-H-elongata_contig86109:578..9921691679765.068245-CDS-H-elongata_contig86109:578..992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86109 579..992 -
1622931263.976189-CDS-H-elongata_contig86109:1073..12591622931263.976189-CDS-H-elongata_contig86109:1073..1259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86109 1074..1259 -
1691679765.078567-CDS-H-elongata_contig86109:1073..12591691679765.078567-CDS-H-elongata_contig86109:1073..1259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86109 1074..1259 -
1622931263.9965153-CDS-H-elongata_contig86109:1610..17121622931263.9965153-CDS-H-elongata_contig86109:1610..1712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86109 1611..1712 -
1691679765.0877793-CDS-H-elongata_contig86109:1610..17121691679765.0877793-CDS-H-elongata_contig86109:1610..1712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86109 1611..1712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86109.16187.1

>prot_H-elongata_contig86109.16187.1 ID=prot_H-elongata_contig86109.16187.1|Name=mRNA_H-elongata_contig86109.16187.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
MLDIWTDKGSQRKFLASHVYYVTANFELKDVLLSIKRYSPDQGALGQAKA
SEVLLEIFKSILHEFGLNPSNLASGTTDSGSDVKAVSINGLWKQFGSKNP
AARDLLKTVIKVVETLNKSSNLRAKFEDLQVDLLGEVFKVVKHAPQRWLS
LTRTLERIIRLWHVLRRLYSDEGKNFPLEEGDNKDGILQLYSLLQPLSSI
TRDGQYGGAPMTAEIFMKFANLKTKVLDMSEPLR
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mRNA from alignment at H-elongata_contig86109:579..1712-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86109.16187.1 ID=mRNA_H-elongata_contig86109.16187.1|Name=mRNA_H-elongata_contig86109.16187.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1134bp|location=Sequence derived from alignment at H-elongata_contig86109:579..1712- (Himanthalia elongata Himel1 dioecious)
ATGCTCGACATTTGGACTGACAAAGGATCGCAGCGCAAGTTCCTCGCTAG CCACGTTTACTACGTGACCGCAAACTTCGAGCTGAAGGACGTCCTACTCT CCGTGAGTGAACCGTTCTGTGCTTCACAACATATACTCCGTATTTCTTAT TACTTGCTTTCACATTAAACTCGTATGTCAGTTGCCAATCTCAGAATCTA GCAAGGACTCGGCCCGTGGTCACAAAAAATGCTGGAGCCATCAGAAGATC TAAAGAACACGCACACGTAGCAAGAAAAGGGTACACAAGCCCGAAGAGGT ACACCTGAAATCCCTGCAGCACGTTATGCGTGCCCAAAACTGAAAAAGAA CGACCAATCAAAGGTTCGCATTTAAATTTGACAATCAACCTATTGAAACA GTTTTTTTTTCTGCCGCCCCCATCGCTGCCCTCCCTCATAAATGTTACCC CAGATCAAGCGCTACTCGCCCGATCAGGGGGCCCTGGGGCAAGCGAAGGC CTCCGAAGTGCTTCTCGAGATTTTCAAGTCCATCCTGCACGAGTTTGGGC TGAATCCGTCTAACCTCGCCTCGGGTACTACGGATAGCGGGTCGGACGTC AAGGCCGTGAGCATCAACGGCCTCTGGAAGCAGTTTGGGGTGCTGTGGAA TTGGTGTTTCTGCCACCTGATGGTGAAGGCCGCCGAGCAAGCCTTCGGCA CGTCCCTCGACCCAGCCAAGTCCAAGAACCCAGCCGCACGCGACCTTCTC AAGACCGTCATCAAGGTCGTCGAGACCCTCAACAAGTCGTCGAACTTGAG GGCGAAGTTCGAGGACCTGCAGGTGGACCTGTTGGGCGAGGTCTTCAAGG TCGTCAAGCACGCTCCCCAACGGTGGCTCAGCCTCACTCGCACACTGGAG CGGATCATCCGCTTGTGGCACGTCCTCAGGAGGCTCTACAGCGACGAGGG GAAGAACTTCCCTCTCGAAGAGGGCGACAACAAGGACGGCATCCTTCAAC TCTACTCGCTGCTGCAGCCGCTTTCCTCGATCACGCGTGACGGTCAGTAC GGCGGCGCGCCGATGACGGCGGAGATCTTCATGAAGTTTGCTAACCTCAA GACCAAAGTGCTGGACATGTCGGAGCCTCTCAGA
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Coding sequence (CDS) from alignment at H-elongata_contig86109:579..1712-

>mRNA_H-elongata_contig86109.16187.1 ID=mRNA_H-elongata_contig86109.16187.1|Name=mRNA_H-elongata_contig86109.16187.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig86109:579..1712- (Himanthalia elongata Himel1 dioecious)
ATGCTCGACATTTGGACTGACAAAGGATCGCAGCGCAAGTTCCTCGCTAG
CCACGTTTACTACGTGACCGCAAACTTCGAGCTGAAGGACGTCCTACTCT
CCATGCTCGACATTTGGACTGACAAAGGATCGCAGCGCAAGTTCCTCGCT
AGCCACGTTTACTACGTGACCGCAAACTTCGAGCTGAAGGACGTCCTACT
CTCCATCAAGCGCTACTCGCCCGATCAGGGGGCCCTGGGGCAAGCGAAGG
CCTCCGAAGTGCTTCTCGAGATTTTCAAGTCCATCCTGCACGAGTTTGGG
CTGAATCCGTCTAACCTCGCCTCGGGTACTACGGATAGCGGGTCGGACGT
CAAGGCCGTGAGCATCAACGGCCTCTGGAAGCAGTTTGGGATCAAGCGCT
ACTCGCCCGATCAGGGGGCCCTGGGGCAAGCGAAGGCCTCCGAAGTGCTT
CTCGAGATTTTCAAGTCCATCCTGCACGAGTTTGGGCTGAATCCGTCTAA
CCTCGCCTCGGGTACTACGGATAGCGGGTCGGACGTCAAGGCCGTGAGCA
TCAACGGCCTCTGGAAGCAGTTTGGGTCCAAGAACCCAGCCGCACGCGAC
CTTCTCAAGACCGTCATCAAGGTCGTCGAGACCCTCAACAAGTCGTCGAA
CTTGAGGGCGAAGTTCGAGGACCTGCAGGTGGACCTGTTGGGCGAGGTCT
TCAAGGTCGTCAAGCACGCTCCCCAACGGTGGCTCAGCCTCACTCGCACA
CTGGAGCGGATCATCCGCTTGTGGCACGTCCTCAGGAGGCTCTACAGCGA
CGAGGGGAAGAACTTCCCTCTCGAAGAGGGCGACAACAAGGACGGCATCC
TTCAACTCTACTCGCTGCTGCAGCCGCTTTCCTCGATCACGCGTGACGGT
CAGTACGGCGGCGCGCCGATGACGGCGGAGATCTTCATGAAGTTTGCTAA
CCTCAAGACCAAAGTGCTGGACATGTCGGAGCCTCTCAGATCCAAGAACC
CAGCCGCACGCGACCTTCTCAAGACCGTCATCAAGGTCGTCGAGACCCTC
AACAAGTCGTCGAACTTGAGGGCGAAGTTCGAGGACCTGCAGGTGGACCT
GTTGGGCGAGGTCTTCAAGGTCGTCAAGCACGCTCCCCAACGGTGGCTCA
GCCTCACTCGCACACTGGAGCGGATCATCCGCTTGTGGCACGTCCTCAGG
AGGCTCTACAGCGACGAGGGGAAGAACTTCCCTCTCGAAGAGGGCGACAA
CAAGGACGGCATCCTTCAACTCTACTCGCTGCTGCAGCCGCTTTCCTCGA
TCACGCGTGACGGTCAGTACGGCGGCGCGCCGATGACGGCGGAGATCTTC
ATGAAGTTTGCTAACCTCAAGACCAAAGTGCTGGACATGTCGGAGCCTCT
CAGA
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