mRNA_H-elongata_contig86086.16185.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig86086.16185.1 vs. uniprot
Match: D8LBL0_ECTSI (RF_PROK_I domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBL0_ECTSI) HSP 1 Score: 328 bits (842), Expect = 6.110e-110 Identity = 167/211 (79.15%), Postives = 186/211 (88.15%), Query Frame = 1
Query: 34 MRERLEQMKGRHKEIVESMTVGTVPVRDMGAVGKELGRLEVVLEKQAAVSAKASEISDLEEVMGLSNAAGVETDREMYSIAKEERQECVSVLESLRLELTSLLLPRDEADSKNALLEVRSGTGGDEAAMFARDLFEMYRRFAELKGWQFEGLHCSTIDVGGYREATASIRGEDVYGSLKYENGVHRVQRVPSNSTRLHTSAASVVVMMEAE 666
MR+RLE MKGRH+EIVESMT G VPVR+MG+VGKELGRLE VL+ QA V KA+EI DLEEVM +NA G E DREM+ IAKEE +C + LE LRL+LTSLLLPRDE DSKNALLEVRSG+GGDEAA FA++LFEMYRRFAELKGW+FEG+ CS+ID GGYREA+ASIRGEDVYGSLK+ENGVHRVQRVPSNS RLHTSAASVVVMMEAE
Sbjct: 1 MRQRLEHMKGRHEEIVESMTKGEVPVREMGSVGKELGRLEAVLDLQAKVEEKAAEIQDLEEVMQATNAGGAEADREMHGIAKEEHADCTAALEKLRLDLTSLLLPRDEGDSKNALLEVRSGSGGDEAAAFAKELFEMYRRFAELKGWKFEGMTCSSIDAGGYREASASIRGEDVYGSLKFENGVHRVQRVPSNSPRLHTSAASVVVMMEAE 211
BLAST of mRNA_H-elongata_contig86086.16185.1 vs. uniprot
Match: A0A651FQP8_9PROT (Peptide chain release factor 1 n=1 Tax=Micavibrio sp. TaxID=2024841 RepID=A0A651FQP8_9PROT) HSP 1 Score: 182 bits (462), Expect = 1.200e-52 Identity = 98/215 (45.58%), Postives = 139/215 (64.65%), Query Frame = 1
Query: 28 SSMRERLEQMKGRHKEIVESMTVGTVPVRDMGAVGKELGRLEVVLEKQAAVSAKASEISDLEEVMGLSNAAGVETDREMYSIAKEERQECVSVLESLRLELTSLLLPRDEADSKNALLEVRSGTGGDEAAMFARDLFEMYRRFAELKGWQFEGLHCSTIDVGGYREATASIRGEDVYGSLKYENGVHRVQRVPSNST--RLHTSAASVVVMMEAE 666
SS +L+Q+ RH+E+ M+ G++ D A+ +E L V EK A A SEI DL+ ++ A ET+ EM +A++E L L ++ LLP+DEAD+KNA+LE+R+GTGG+EAA+FA DLF MYR +A ++GW+FE + S D+GGY+E S+ G +V+ LKYE+GVHRVQRVP + R+HTSAA+V V+ EAE
Sbjct: 4 SSFAHKLDQVLARHQELSALMSTGSLSSEDFTAMSREYAELSPVAEKIEAYKAAQSEIDDLKTLL-----AEAETEGEMRQMAEDELYALEKTLPDLEQDIRIALLPKDEADTKNAILEIRAGTGGEEAALFAADLFAMYRGYATIQGWRFEIMEASESDIGGYKEVIVSVSGTNVFARLKYESGVHRVQRVPKTESGGRVHTSAATVAVLPEAE 213
BLAST of mRNA_H-elongata_contig86086.16185.1 vs. uniprot
Match: A0A437QN19_9PROT (Peptide chain release factor 1 n=1 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A437QN19_9PROT) HSP 1 Score: 178 bits (452), Expect = 3.740e-51 Identity = 93/214 (43.46%), Postives = 139/214 (64.95%), Query Frame = 1
Query: 31 SMRERLEQMKGRHKEIVESMTVGTVPVRDMGAVGKELGRLEVVLEKQAAVSAKASEISDLEEVMGLSNAAGVETDREMYSIAKEERQECVSVLESLRLELTSLLLPRDEADSKNALLEVRSGTGGDEAAMFARDLFEMYRRFAELKGWQFEGLHCSTIDVGGYREATASIRGEDVYGSLKYENGVHRVQRVPSNST--RLHTSAASVVVMMEAE 666
S R+RL+++ R +E+ + M G + ++ A+ KE + ++EK A + E +DLEE++ A TD EM +A+EE + L + +L +LLP+DEAD++N ++E+R+GTGGDEAA+FA DL+ MY+++A L GW+ E + S D+GGY + ASI G DVY +KYE+GVHRVQRVP + R+HTSAA+V V+ EAE
Sbjct: 2 SWRDRLQRVTARAQELSDRMAAGNLDAQEFTALSKEYADISPIVEKIEAFQSAEQERADLEELL-----ADKSTDAEMREMAREEANDLKERLPEIEHQLQLMLLPKDEADARNVIIEIRAGTGGDEAALFAGDLYRMYQKYAALNGWRMEAIDISENDIGGYSQIVASISGGDVYARMKYESGVHRVQRVPVTESGGRIHTSAATVAVLPEAE 210
BLAST of mRNA_H-elongata_contig86086.16185.1 vs. uniprot
Match: A0A2E5PI74_9PROT (Peptide chain release factor 1 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PI74_9PROT) HSP 1 Score: 177 bits (450), Expect = 6.410e-51 Identity = 96/214 (44.86%), Postives = 141/214 (65.89%), Query Frame = 1
Query: 31 SMRERLEQMKGRHKEIVESMTVGTVPVRDMGAVGKELGRLEVVLEKQAAVSAKASEISDLEEVMGLSNAAGVETDREMYSIAKEERQECVSVLESLRLELTSLLLPRDEADSKNALLEVRSGTGGDEAAMFARDLFEMYRRFAELKGWQFEGLHCSTIDVGGYREATASIRGEDVYGSLKYENGVHRVQRVPSNST--RLHTSAASVVVMMEAE 666
SM ER + + RH+E+ M+ G + + A+ E L ++EK ++ A SE+ DL E+ V+ D EM +A+ E + + L L EL +LLP+D ADSKNA+LEVR+GTGGDEA++FA +LF MY+R+A+++GW+FE + S ++GGY+EA+A I G V+ LK+E+GVHRVQRVP+ + R+HTSAA+V V+ EAE
Sbjct: 2 SMEERFDSLIMRHEELAALMSTGDLEPSEFTALSVEYAELSPIVEKVQSLKAARSELEDLVEL-------SVDGDLEMKELAETEARVLKAKLPDLEQELRVMLLPKDAADSKNAILEVRAGTGGDEASLFAAELFRMYQRYADIQGWRFEPMSISDTELGGYKEASALISGRGVFARLKFESGVHRVQRVPATESGGRVHTSAATVAVLPEAE 208
BLAST of mRNA_H-elongata_contig86086.16185.1 vs. uniprot
Match: G8AT31_9PROT (Peptide chain release factor 1 n=29 Tax=Azospirillaceae TaxID=2829815 RepID=G8AT31_9PROT) HSP 1 Score: 176 bits (447), Expect = 1.890e-50 Identity = 98/214 (45.79%), Postives = 141/214 (65.89%), Query Frame = 1
Query: 31 SMRERLEQMKGRHKEIVESMTVGTVPVRDMGAVGKELGRLEVVLEKQAAVSAKASEISDLEEVMGLSNAAGVETDREMYSIAKEERQECVSVLESLRLELTSLLLPRDEADSKNALLEVRSGTGGDEAAMFARDLFEMYRRFAELKGWQFEGLHCSTIDVGGYREATASIRGEDVYGSLKYENGVHRVQRVPSNST--RLHTSAASVVVMMEAE 666
S+ E+ ++ RH E+ ++M GTV D + KE L V E A + +E +DL + +++ AG D +M ++A+EE + + +L + LLP+DEAD KNA+LEVR+GTGGDEAA+FA +LFEMYRR+A L+GW+FE + S +GGY+EA A+I G +V+ LK+E+GVHRVQRVP+ T R+HTSAA+V V+ EAE
Sbjct: 2 SLDEKFNRVVARHDELRDAMAAGTVDPADFARLSKEYADLTPVAEAIAELKKAKAEAADLAGM--IADPAG---DADMKALAEEEFGDLTRRIPALERRVQISLLPKDEADEKNAILEVRAGTGGDEAALFAAELFEMYRRYAGLQGWRFETMEVSETGIGGYKEAIANITGRNVFARLKFESGVHRVQRVPATETQGRIHTSAATVAVLPEAE 210
BLAST of mRNA_H-elongata_contig86086.16185.1 vs. uniprot
Match: A0A6M8VLF0_9PROT (Peptide chain release factor 1 n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6M8VLF0_9PROT) HSP 1 Score: 176 bits (447), Expect = 1.980e-50 Identity = 96/214 (44.86%), Postives = 138/214 (64.49%), Query Frame = 1
Query: 31 SMRERLEQMKGRHKEIVESMTVGTVPVRDMGAVGKELGRLEVVLEKQAAVSAKASEISDLEEVMGLSNAAGVETDREMYSIAKEERQECVSVLESLRLELTSLLLPRDEADSKNALLEVRSGTGGDEAAMFARDLFEMYRRFAELKGWQFEGLHCSTIDVGGYREATASIRGEDVYGSLKYENGVHRVQRVPSNST--RLHTSAASVVVMMEAE 666
S +LEQ+ RH+E+ M+ GT + ++ +E L + EK + + A E +DLE G+ G+ D++M +A+EE L L ++ LLP+DEAD+KNA+LE+R+GTGGDEAA+FA DLF+MYR +A L+GW+FE + S D+GGY+E SI G +V+ LK+E+GVHRVQRVP + R+HTSAA+V V+ EAE
Sbjct: 5 SFHRKLEQVLARHQELTALMSEGTASSEEFVSMSREYAELSPIAEKIESYQSAAGEAADLE---GMIADPGM--DKDMRDMAEEELYALQKKLPDLEHDIRIALLPKDEADAKNAILEIRAGTGGDEAALFASDLFDMYRGYAGLRGWRFEIMEASESDIGGYKEVIVSITGTNVFARLKFESGVHRVQRVPKTESGGRIHTSAATVAVLPEAE 213
BLAST of mRNA_H-elongata_contig86086.16185.1 vs. uniprot
Match: A0A3D9HEZ6_9PROT (Peptide chain release factor 1 n=1 Tax=Aestuariispira insulae TaxID=1461337 RepID=A0A3D9HEZ6_9PROT) HSP 1 Score: 176 bits (445), Expect = 3.940e-50 Identity = 96/210 (45.71%), Postives = 136/210 (64.76%), Query Frame = 1
Query: 43 RLEQMKGRHKEIVESMTVGTVPVRDMGAVGKELGRLEVVLEKQAAVSAKASEISDLEEVMGLSNAAGVETDREMYSIAKEERQECVSVLESLRLELTSLLLPRDEADSKNALLEVRSGTGGDEAAMFARDLFEMYRRFAELKGWQFEGLHCSTIDVGGYREATASIRGEDVYGSLKYENGVHRVQRVPSNST--RLHTSAASVVVMMEAE 666
RL+++ RH+E+ +++ G A+ KE L ++EK AA A E+SDLEE++ A + D EM +A+EE Q L L +L LLP+D+ADS+NA+LE+R+GTGGDEAA+FA DLF MY+R+A GW+ E + S ++GG+ + AS+ G DV+ LKYE+GVHRVQRVP + R+HTSAA+V V+ EAE
Sbjct: 6 RLDRVVARHQELSDTLASGQAEGDAFVALSKEFAELSPIVEKVAAFKAAQQELSDLEEMV-----ADPDADAEMKELAEEELQTLNEQLPDLEHQLQLALLPKDQADSRNAILEIRAGTGGDEAALFAGDLFRMYQRYAANHGWRVELIEESANEIGGFSQVVASVSGSDVFKRLKYESGVHRVQRVPETESGGRIHTSAATVAVLPEAE 210
BLAST of mRNA_H-elongata_contig86086.16185.1 vs. uniprot
Match: UPI0004296B1D (peptide chain release factor 1 n=1 Tax=Azospirillum halopraeferens TaxID=34010 RepID=UPI0004296B1D) HSP 1 Score: 173 bits (439), Expect = 3.020e-49 Identity = 96/214 (44.86%), Postives = 136/214 (63.55%), Query Frame = 1
Query: 31 SMRERLEQMKGRHKEIVESMTVGTVPVRDMGAVGKELGRLEVVLEKQAAVSAKASEISDLEEVMGLSNAAGVETDREMYSIAKEERQECVSVLESLRLELTSLLLPRDEADSKNALLEVRSGTGGDEAAMFARDLFEMYRRFAELKGWQFEGLHCSTIDVGGYREATASIRGEDVYGSLKYENGVHRVQRVPSNST--RLHTSAASVVVMMEAE 666
S+ E +++ RH E+ ++++ GT + + +E L V E A+ +E +DL + AA D EM ++A EE +E L +L + LLPRDEAD KNA+LEVR+GTGG+EAA+FA +LFEMYRR+A L GW+FE + S +GGY+EA A+I G +V+ LK+E+GVHRVQRVP+ R+HTSAA+V V+ EAE
Sbjct: 2 SLEETFDRVLARHDELRDALSAGTADSGEFARLSREYAELTPVAEAIGALKKARAETADLAAM-----AADPAADAEMRALAAEELRELEGRLPALERTVQVALLPRDEADEKNAILEVRAGTGGEEAALFAAELFEMYRRYAGLHGWRFETMEVSETGLGGYKEAIANITGRNVFARLKFESGVHRVQRVPATEAQGRIHTSAATVAVLPEAE 210
BLAST of mRNA_H-elongata_contig86086.16185.1 vs. uniprot
Match: A0A7W1AWP7_9HYPH (Peptide chain release factor 1 n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7W1AWP7_9HYPH) HSP 1 Score: 173 bits (438), Expect = 4.690e-49 Identity = 97/212 (45.75%), Postives = 140/212 (66.04%), Query Frame = 1
Query: 40 ERLEQMKGRHKEIVESMTVGTVPVRDMGA-VGKELGRLEVVLEKQAAVSAKASEISDLEEVMGLSNAAGVETDREMYSIAKEERQECVSVLESLRLELTSLLLPRDEADSKNALLEVRSGTGGDEAAMFARDLFEMYRRFAELKGWQFEGLHCSTIDVGGYREATASIRGEDVYGSLKYENGVHRVQRVPSNST--RLHTSAASVVVMMEAE 666
ERL + RH+ + + G P RD + +EL L+ V EK A+S +E++++E ++ A T+R+M ++A++ER +E++R EL LL+PRD AD ++A+LEVR+GTGGDEA +FA +LF MY R+A LKGW+ E L S ++GGYRE A++RG VY LK+E+GVHRVQRVP+ R+HTSAA+V V+ EAE
Sbjct: 8 ERLRSLIHRHEAVNAMLAAG--PARDEYVRLSRELAELDPVAEKARALSVVEAELAEMEALI-----ADAATERDMRALAEDERLALREKIEAIRGELRVLLVPRDAADDRSAILEVRAGTGGDEAGLFAGNLFRMYERYAALKGWRIEALSASEGEMGGYREIVAAVRGVGVYARLKFESGVHRVQRVPTTEAGGRIHTSAATVAVLPEAE 212
BLAST of mRNA_H-elongata_contig86086.16185.1 vs. uniprot
Match: UPI001D0223BF (peptide chain release factor 1 n=1 Tax=Nisaea sediminum TaxID=2775867 RepID=UPI001D0223BF) HSP 1 Score: 172 bits (437), Expect = 5.170e-49 Identity = 99/214 (46.26%), Postives = 133/214 (62.15%), Query Frame = 1
Query: 34 MRERLEQMKGRHKEIVESMTVGT-VPVRDMGAVGKELGRLEVVLEKQAAVSAKASEISDLEEVMGLSNAAGVETDREMYSIAKEERQECVSVLESLRLELTSLLLPRDEADSKNALLEVRSGTGGDEAAMFARDLFEMYRRFAELKGWQFEGLHCSTIDVGGYREATASIRGEDVYGSLKYENGVHRVQRVPSNST--RLHTSAASVVVMMEAE 666
M+ LE++ RHKE+ + G V +D+ + +EL L V EK + E+ D A G+ D +M +A EE + L +L E+ LLLP+DEAD KNA+LEVR+GTGGDEAA+FA DLF MY+R+A KGW+FE + S D+GGY+EA A I G V+ LK+E+GVHRVQRVP + R+HTSAA+V V+ EAE
Sbjct: 1 MQANLERVLARHKELEAMLASGNGVASQDIAKLSRELSELAPVAEKVTELKEMRKELED---------ARGLLEDPDMEDMATEEIERLEKELPALEREVQILLLPKDEADEKNAILEVRAGTGGDEAALFASDLFGMYQRYAAQKGWKFEIMEISENDIGGYKEAIAEISGRSVFARLKFESGVHRVQRVPVTESGGRIHTSAATVAVLPEAE 205 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86086.16185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig86086.16185.1 >prot_H-elongata_contig86086.16185.1 ID=prot_H-elongata_contig86086.16185.1|Name=mRNA_H-elongata_contig86086.16185.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp SSEEAAWLPSSMRERLEQMKGRHKEIVESMTVGTVPVRDMGAVGKELGRLback to top mRNA from alignment at H-elongata_contig86086:449..2730+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig86086.16185.1 ID=mRNA_H-elongata_contig86086.16185.1|Name=mRNA_H-elongata_contig86086.16185.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2282bp|location=Sequence derived from alignment at H-elongata_contig86086:449..2730+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig86086:449..2730+ >mRNA_H-elongata_contig86086.16185.1 ID=mRNA_H-elongata_contig86086.16185.1|Name=mRNA_H-elongata_contig86086.16185.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1332bp|location=Sequence derived from alignment at H-elongata_contig86086:449..2730+ (Himanthalia elongata Himel1 dioecious)back to top |