mRNA_H-elongata_contig8601.16182.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8601.16182.1
Unique NamemRNA_H-elongata_contig8601.16182.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig8601.16182.1 vs. uniprot
Match: D7G1B1_ECTSI (Calmodulin-like myosin-light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B1_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 3.010e-63
Identity = 128/226 (56.64%), Postives = 154/226 (68.14%), Query Frame = 1 
Query:    4 PLDLSRAH-PTLTLAARAADTLADALACGDPATIDHLENYGLXXXXXXXXKVSVNHIRDSRRLGVEDVHLLQTYHTGRRARIKLLDRVLSQS---------HRGLQEQVIVSGLVEFIVRDMLPDCETTEVINARLPTSFIRHNGTPLVRDEGIALMERVLMRRRRSPAVAREMARQTVRHTLPAAECDRLRQLRLRSVRAGVSKCLRYLTCLDSAPVDNALTIAG 651
            P  ++RAH      A  A DTLA+ALA GD  T+D +EN+GL        + S    R+SRRLGVE+VHLL+TY  GR AR+KL DR+L             RGLQ Q+IVSGLVEFI  +MLPDC  T++++ RLP +F+R+NGTPLVR+EGIA +ERV+ RR   PAVARE ARQ VRH LP AEC RLR  R RSVRAGVS CLR L  L+S PVD AL +AG
Sbjct: 5384 PPGVARAHWGARGPAVGATDTLAEALAHGDRETVDAMENHGLGVRLGQAVEASTRLTRESRRLGVEEVHLLRTYPAGRLARVKLFDRILCHRGDRGGXXXXXRGLQAQLIVSGLVEFIAINMLPDCAVTDIVSTRLPAAFVRYNGTPLVRNEGIAFLERVVARRAGCPAVARETARQAVRHGLPPAECTRLRGNRHRSVRAGVSACLRCLARLESPPVDRALKLAG 5609
[Close]
BLAST of mRNA_H-elongata_contig8601.16182.1 vs. uniprot
Match: A0A6H5KGH7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGH7_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.030e-60
Identity = 120/201 (59.70%), Postives = 144/201 (71.64%), Query Frame = 1 
Query:    7 LDLSRAHPTLTLAARAADTLADALACGDPATIDHLENYGLXXXXXXXXKVSVNHIRDSRRLGVEDVHLLQTYHTGRRARIKLLDRVLS-QSHRG------LQEQVIVSGLVEFIVRDMLPDCETTEVINARLPTSFIRHNGTPLVRDEGIALMERVLMRRRRSPAVAREMARQTVRHTLPAAECDRLRQLRLRSVRAGVSK 588
            LDL RAHP  TLA  A DTLA+ALA GD  T+D +EN+GL        + S    R+SRRLGVE+VHLL+TY  GR AR+KL DR+L  Q  RG      LQ Q+I+SGLVEFI  +MLPDC  T++++ RLP +F+RHNGTPLVR+EGIA +ERV+ RR   PAVARE ARQ VRH LP AEC RLR+ R RSVRAG S+
Sbjct: 1935 LDLYRAHPIPTLAVGATDTLAEALAHGDRETVDAMENHGLGVRLGLAVEASTRLTRESRRLGVEEVHLLRTYPAGRLARVKLFDRILCHQGGRGGGGGRELQAQLIISGLVEFITSNMLPDCAVTDIVSTRLPAAFVRHNGTPLVRNEGIAFLERVVARRAGCPAVAREAARQAVRHGLPPAECTRLRENRHRSVRAGASR 2135
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8601.16182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1B1_ECTSI3.010e-6356.64Calmodulin-like myosin-light chain n=1 Tax=Ectocar... [more]
A0A6H5KGH7_9PHAE1.030e-6059.70Protein kinase domain-containing protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8601contigH-elongata_contig8601:7261..7911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.5
Seed ortholog evalue1.2e-56
Seed eggNOG ortholog2880.D7G1B1
EggNOG free text desc.Tudor domain
EggNOG OGs2CMGM@1,2QQAC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncalmodulin-like myosin-light chain
Ec32 orthologEc-17_003950.1
Exons1
Model size651
Cds size651
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931263.5435653-CDS-H-elongata_contig8601:7260..79111622931263.5435653-CDS-H-elongata_contig8601:7260..7911Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8601 7261..7911 +
1691679764.893395-CDS-H-elongata_contig8601:7260..79111691679764.893395-CDS-H-elongata_contig8601:7260..7911Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8601 7261..7911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8601.16182.1prot_H-elongata_contig8601.16182.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8601 7261..7911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8601.16182.1

>prot_H-elongata_contig8601.16182.1 ID=prot_H-elongata_contig8601.16182.1|Name=mRNA_H-elongata_contig8601.16182.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
MPLDLSRAHPTLTLAARAADTLADALACGDPATIDHLENYGLGLGLGLAV
KVSVNHIRDSRRLGVEDVHLLQTYHTGRRARIKLLDRVLSQSHRGLQEQV
IVSGLVEFIVRDMLPDCETTEVINARLPTSFIRHNGTPLVRDEGIALMER
VLMRRRRSPAVAREMARQTVRHTLPAAECDRLRQLRLRSVRAGVSKCLRY
LTCLDSAPVDNALTIAG
back to top

mRNA from alignment at H-elongata_contig8601:7261..7911+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8601.16182.1 ID=mRNA_H-elongata_contig8601.16182.1|Name=mRNA_H-elongata_contig8601.16182.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=651bp|location=Sequence derived from alignment at H-elongata_contig8601:7261..7911+ (Himanthalia elongata Himel1 dioecious)
ATGCCACTCGATTTGAGCAGGGCGCACCCCACCCTTACTCTAGCTGCCAG
AGCGGCTGATACACTGGCAGATGCGCTTGCCTGCGGCGACCCGGCTACTA
TTGACCACCTCGAGAATTACGGGCTGGGGCTGGGGCTCGGACTGGCGGTG
AAAGTATCTGTTAATCATATACGTGATAGTCGTCGACTCGGTGTAGAAGA
TGTCCACCTGTTACAGACATATCACACAGGAAGACGCGCCAGAATCAAGT
TATTGGATAGGGTTTTGTCTCAATCCCACCGCGGACTTCAAGAACAGGTA
ATCGTTTCCGGTCTAGTGGAATTTATTGTGAGGGATATGTTACCTGATTG
CGAAACAACCGAAGTTATCAACGCACGGCTCCCGACAAGTTTCATCCGGC
ACAACGGCACTCCCCTTGTCAGGGACGAGGGTATTGCCTTGATGGAGCGC
GTGCTCATGAGGCGGCGGCGTTCCCCTGCTGTTGCCCGCGAGATGGCGAG
GCAAACTGTTCGACACACCCTTCCAGCCGCTGAGTGCGACCGTCTTCGAC
AGCTCCGCCTTCGGTCTGTGAGGGCTGGGGTCAGTAAATGTCTACGATAC
CTCACGTGTCTGGACAGTGCTCCAGTGGATAACGCTTTGACCATTGCTGG
G
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8601:7261..7911+

>mRNA_H-elongata_contig8601.16182.1 ID=mRNA_H-elongata_contig8601.16182.1|Name=mRNA_H-elongata_contig8601.16182.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig8601:7261..7911+ (Himanthalia elongata Himel1 dioecious)
ATGCCACTCGATTTGAGCAGGGCGCACCCCACCCTTACTCTAGCTGCCAG
AGCGGCTGATACACTGGCAGATGCGCTTGCCTGCGGCGACCCGGCTACTA
TTGACCACCTCGAGAATTACGGGCTGGGGCTGGGGCTCGGACTGGCGGTG
AAAGTATCTGTTAATCATATACGTGATAGTCGTCGACTCGGTGTAGAAGA
TGTCCACCTGTTACAGACATATCACACAGGAAGACGCGCCAGAATCAAGT
TATTGGATAGGGTTTTGTCTCAATCCCACCGCGGACTTCAAGAACAGGTA
ATCGTTTCCGGTCTAGTGGAATTTATTGTGAGGGATATGTTACCTGATTG
CGAAACAACCGAAGTTATCAACGCACGGCTCCCGACAAGTTTCATCCGGC
ACAACGGCACTCCCCTTGTCAGGGACGAGGGTATTGCCTTGATGGAGCGC
GTGCTCATGAGGCGGCGGCGTTCCCCTGCTGTTGCCCGCGAGATGGCGAG
GCAAACTGTTCGACACACCCTTCCAGCCGCTGAGTGCGACCGTCTTCGAC
AGCTCCGCCTTCGGTCTGTGAGGGCTGGGGTCAGTAAATGTCTACGATAC
CTCACGTGTCTGGACAGTGCTCCAGTGGATAACGCTTTGACCATTGCTGG
GATGCCACTCGATTTGAGCAGGGCGCACCCCACCCTTACTCTAGCTGCCA
GAGCGGCTGATACACTGGCAGATGCGCTTGCCTGCGGCGACCCGGCTACT
ATTGACCACCTCGAGAATTACGGGCTGGGGCTGGGGCTCGGACTGGCGGT
GAAAGTATCTGTTAATCATATACGTGATAGTCGTCGACTCGGTGTAGAAG
ATGTCCACCTGTTACAGACATATCACACAGGAAGACGCGCCAGAATCAAG
TTATTGGATAGGGTTTTGTCTCAATCCCACCGCGGACTTCAAGAACAGGT
AATCGTTTCCGGTCTAGTGGAATTTATTGTGAGGGATATGTTACCTGATT
GCGAAACAACCGAAGTTATCAACGCACGGCTCCCGACAAGTTTCATCCGG
CACAACGGCACTCCCCTTGTCAGGGACGAGGGTATTGCCTTGATGGAGCG
CGTGCTCATGAGGCGGCGGCGTTCCCCTGCTGTTGCCCGCGAGATGGCGA
GGCAAACTGTTCGACACACCCTTCCAGCCGCTGAGTGCGACCGTCTTCGA
CAGCTCCGCCTTCGGTCTGTGAGGGCTGGGGTCAGTAAATGTCTACGATA
CCTCACGTGTCTGGACAGTGCTCCAGTGGATAACGCTTTGACCATTGCTG
GG
back to top