mRNA_H-elongata_contig85910.16174.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: D8LFM8_ECTSI (Pseudouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFM8_ECTSI) HSP 1 Score: 286 bits (732), Expect = 4.230e-92 Identity = 148/196 (75.51%), Postives = 164/196 (83.67%), Query Frame = 1
Query: 1 DETAFSSEVITVEEGEEGRRLDAFLGGRIPEQSRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 588
+E AF++E++TVEEGE G+RLD+FLG R+PEQSRSYFG LCQLGMV V GKTAKKS KVE GQEVEVRF+ISPELS++GEDIPLDIL+EDD+IIAV+KP GMVVHPAPGSWNGTFVNALV HL K AD G A VPDGEHNP LRPGIVHRLDKGTTGVLLAAKNP MQAKLA LFA+RR+S Y
Sbjct: 97 EEIAFNTEMLTVEEGEGGKRLDSFLGARMPEQSRSYFGGLCQLGMVLVGGKTAKKSVKVEEGQEVEVRFIISPELSLQGEDIPLDILYEDDEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKSGADG--NGLGVAEAAF-QSVPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAQRRISKSY 289
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A7S3XXK7_HETAK (Pseudouridine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXK7_HETAK) HSP 1 Score: 193 bits (491), Expect = 7.070e-57 Identity = 105/196 (53.57%), Postives = 127/196 (64.80%), Query Frame = 1
Query: 1 DETAFSSEVITVEEGEEGRRLDAFLGGRIPEQSRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 588
D+ E + V E +RLDAFL PEQSRSYFGSLCQ G+V V G+ KKS K+ GQEV V F+ + E++ E EDIPLDIL+ED+ +IAV KPPGMVVHPAPGSW+GTF NAL H+ + D RA G D LRPGIVHRLDKGT+GVLLA+KN AKL+ +FA R++ Y
Sbjct: 60 DDDDLQEETVIVGEEYNKKRLDAFLSDEFPEQSRSYFGSLCQQGLVRVGGRAVKKSEKLRAGQEVSVAFLPTAEMAAEPEDIPLDILYEDEHLIAVAKPPGMVVHPAPGSWSGTFANALAFHMRSRGEDY--------RAAGGGDA--------LRPGIVHRLDKGTSGVLLASKNSQCHAKLSEMFASRKIKKTY 239
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A836CH15_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH15_9STRA) HSP 1 Score: 187 bits (476), Expect = 1.280e-54 Identity = 101/193 (52.33%), Postives = 130/193 (67.36%), Query Frame = 1
Query: 13 FSSEVITVEEGEEGRRLDAFLGGRIPEQSRSYFGSLCQLGMVFVEGKTA-KKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 588
F V + + G+R+DAFL ++P+QSR+YFG LC G V V G +A KKS KV GQ + VRF+ + EL++ EDIPLD++FED +++A+ KPPGMVVHPAPG+WNGTFVNAL+HHL K +G V GE LRPG+VHRLDKGT+GVLLAAK P MQ +L+ LF +R+V Y
Sbjct: 51 FDVSVFEADLADAGQRIDAFLCSKVPDQSRTYFGDLCTKGCVCVNGSSAVKKSHKVTAGQIISVRFLATAELNLGPEDIPLDVIFEDSELLAIAKPPGMVVHPAPGNWNGTFVNALLHHLSK----------------DGSVVSLGESGD-LRPGVVHRLDKGTSGVLLAAKTPIMQKQLSQLFHDRKVRKTY 226
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A7S2WTM0_9STRA (Pseudouridine synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTM0_9STRA) HSP 1 Score: 179 bits (455), Expect = 2.920e-51 Identity = 101/198 (51.01%), Postives = 126/198 (63.64%), Query Frame = 1
Query: 1 DETAFSSEVITVEEGEEGRRLDAFLGGRIPEQSRSYFGSLCQLGMVF--VEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 588
D ++EV VEEG G+RLD FL ++P+QSRSY GSLC G V+ +G+ KKS +V +EV VRF ++ EL++ E + LDILFED+ ++ VNK PGMVVHPAPG WNGT VNAL+HHLG A R+ G D T LRPGIVHRLDKGT+G ++ AK P QA LA F ER+V Y
Sbjct: 28 DAVGAATEVFMVEEGGAGKRLDQFLASQVPDQSRSYLGSLCTGGCVWRPTDGRVLKKSHRVRAAEEVAVRFQVNDELALAPEALDLDILFEDESMLVVNKKPGMVVHPAPGHWNGTLVNALLHHLGP-AGGRL----GQDSGT-------------LRPGIVHRLDKGTSGAIVVAKTPEAQAALADAFRERKVLKTY 207
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A7X5TFN1_9BACT (Pseudouridine synthase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A7X5TFN1_9BACT) HSP 1 Score: 160 bits (406), Expect = 3.040e-45 Identity = 89/191 (46.60%), Postives = 116/191 (60.73%), Query Frame = 1
Query: 19 SEVITVEEGEEGRRLDAFLGGRIPE-QSRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 588
+E I + E E G+RLD L R E +SR+YF SL + V + G KK K + G EVE+ FV++PE+ V E IPLD+L+ED+DI+ VNKP GMVVHPAPG+W+GTFVNAL++H + +D H LRPGIVHRLDK T+GVL++AK Q +L +FA R V Y
Sbjct: 6 TETIIITEDEAGQRLDKILANRFKEVRSRTYFQSLIRDHNVLLNGSPIKKQVKPQVGDEVEILFVLTPEIDVTPEPIPLDVLYEDEDILVVNKPSGMVVHPAPGNWSGTFVNALLYHCKQLPSDSQH----------------------LRPGIVHRLDKETSGVLVSAKTSQAQQRLVEMFASREVYKEY 174
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A6M1ZYV1_9BACT (Pseudouridine synthase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1ZYV1_9BACT) HSP 1 Score: 158 bits (400), Expect = 1.860e-44 Identity = 92/191 (48.17%), Postives = 112/191 (58.64%), Query Frame = 1
Query: 19 SEVITVEEGEEGRRLDAFLGGRIPEQ-SRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 588
++VI V E G RLD L R + SR+YF L + +V + G KK K G E+EV FV++P+ V+ E IPLDIL+EDDDI+ VNKP GMVVHPAPG+W GTFVNAL+HH AAD +RPGIVHRLDK T+GVL+AAKN Q KL FA R+V Y
Sbjct: 5 TDVIIVTASEAGERLDKILAARYENRHSRTYFQYLIEEHLVSLNGAPVKKRIKPIEGDEIEVHFVLTPQTEVQPEPIPLDILYEDDDILVVNKPAGMVVHPAPGNWTGTFVNALLHHCQDLAADPND----------------------VRPGIVHRLDKETSGVLIAAKNLLAQQKLIEQFANRKVKKQY 173
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A7V9UFC7_9BACT (Pseudouridine synthase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7V9UFC7_9BACT) HSP 1 Score: 159 bits (401), Expect = 2.130e-44 Identity = 90/189 (47.62%), Postives = 117/189 (61.90%), Query Frame = 1
Query: 28 ITVEEGEEGRRLDAFLGGRIPE-QSRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGK-KAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 588
I + E E G+RLD L R E +SR+YF L + V V G+ KK K E G EVEV F+++PE++++ E+IPLDI++EDD II +NKP GMVVHPA G+W GTFVNAL++H + + R +TG LRPGIVHRLDK TTG+LLAAK Q KL LF+ R++ Y
Sbjct: 8 IIISETEAGQRLDKILADRFKELKSRTYFQYLIEEQKVLVNGEQVKKRFKPEFGDEVEVHFILTPEITLQAENIPLDIIYEDDSIILINKPAGMVVHPAAGNWTGTFVNALLYHCQEIEKLSRSANSTG-----------------NLRPGIVHRLDKETTGLLLAAKTEEAQRKLVELFSNRKIIKEY 179
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A1F8J0B0_9BACT (Pseudouridine synthase n=1 Tax=Chlamydiae bacterium RIFCSPHIGHO2_01_FULL_44_39 TaxID=1797598 RepID=A0A1F8J0B0_9BACT) HSP 1 Score: 157 bits (398), Expect = 5.140e-44 Identity = 89/189 (47.09%), Postives = 109/189 (57.67%), Query Frame = 1
Query: 22 EVITVEEGEEGRRLDAFLGGRIPEQSRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 588
E + + EEG R+D L R P SR+YF L +LG V + G+ KK E G E+EV F +PE S+E E IPLDIL+ED+ I+A+NKP GMVVHPAPG W+ TFVNAL+ H H G D LRPGIVHRLDK TTGVLLAAK +L LF+ R++ Y
Sbjct: 8 EFLLISSREEGLRIDKLLANRFPGHSRTYFQHLLELGCVLINGERVKKKTIPEEGDEIEVCFQATPEASLEPEHIPLDILYEDEHILAINKPAGMVVHPAPGHWSKTFVNALLAHC-------QHLAPGVDP---------------LRPGIVHRLDKDTTGVLLAAKTTIAHQRLIELFSTRQMKKLY 174
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A7W1U2J2_9BACT (Pseudouridine synthase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1U2J2_9BACT) HSP 1 Score: 157 bits (396), Expect = 8.590e-44 Identity = 88/190 (46.32%), Postives = 120/190 (63.16%), Query Frame = 1
Query: 22 EVITVEEGEEGRRLDAFLGGRIPE-QSRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 588
E++ V++ E G RLD L R +SR+YF L + G V + G +AKK K G E++V FV++PE+ + E IPLDI+FED+ IIA+NKP GMVVHPA G+W GTFVNAL++H + G+ +P E +P LRPGIVHRLDK T+G+LLAAK P +L +F+ER++ Y
Sbjct: 5 ELLVVQDEEAGERLDKILARRFDGIKSRTYFQMLIEEGHVLLNGLSAKKRIKPTAGDEIQVNFVLTPEIGLSPEAIPLDIIFEDEHIIAINKPVGMVVHPAVGNWTGTFVNALLYHCQQL----------------GLSLP--ESSP-LRPGIVHRLDKDTSGLLLAAKTPLAHQRLVAMFSERKIHKEY 175
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A0H5E3K8_9BACT (Pseudouridine synthase n=1 Tax=Estrella lausannensis TaxID=483423 RepID=A0A0H5E3K8_9BACT) HSP 1 Score: 154 bits (390), Expect = 1.030e-42 Identity = 89/190 (46.84%), Postives = 119/190 (62.63%), Query Frame = 1
Query: 22 EVITVEEGEEGRRLDAFLGGRIPE-QSRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 588
E + + E E G RLD L GR + +SR+YF L Q G V V G KK + G VEV+F+++PEL++ E+IPL IL+ED+ +IA++KPPGMVVHPAPG+W+GT VNAL+ H + + F + EH +RPGIVHRLDK T+GVLLAAK+ +M KL LF+ R+V Y
Sbjct: 11 EEVLIAESEAGERLDKILAGRFKDVKSRTYFQYLFQEGKVSVNGLPVKKQYRPRTGDLVEVQFILTPELNLAAENIPLRILYEDESLIAIDKPPGMVVHPAPGNWSGTVVNALLFHCTRLKEE-------FQQ----------EH---IRPGIVHRLDKETSGVLLAAKSHSMHGKLVDLFSSRQVYKEY 180 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig85910.16174.1 >prot_H-elongata_contig85910.16174.1 ID=prot_H-elongata_contig85910.16174.1|Name=mRNA_H-elongata_contig85910.16174.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp DETAFSSEVITVEEGEEGRRLDAFLGGRIPEQSRSYFGSLCQLGMVFVEGback to top mRNA from alignment at H-elongata_contig85910:1429..2437+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig85910.16174.1 ID=mRNA_H-elongata_contig85910.16174.1|Name=mRNA_H-elongata_contig85910.16174.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1009bp|location=Sequence derived from alignment at H-elongata_contig85910:1429..2437+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig85910:1429..2437+ >mRNA_H-elongata_contig85910.16174.1 ID=mRNA_H-elongata_contig85910.16174.1|Name=mRNA_H-elongata_contig85910.16174.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig85910:1429..2437+ (Himanthalia elongata Himel1 dioecious)back to top |