mRNA_H-elongata_contig85883.16171.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig85883.16171.1 vs. uniprot
Match: D8LNA6_ECTSI (Methionine aminopeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA6_ECTSI) HSP 1 Score: 192 bits (489), Expect = 2.580e-57 Identity = 97/149 (65.10%), Postives = 109/149 (73.15%), Query Frame = 1
Query: 19 LFMTKGFGVTKKPDKXXXXXXXXXXXXXXXXXXXKRASKTTGFSFTGSLRPGLQSPPRSVPPEILRPDYAVDGIPKARSPMLPWVIEVKKASDIEGMRAAGRVAREVLDLAGQAVVAGATTDDVDRVCHEAAVERGAYPSPLNYHGFPK 465
LFM KGFG KK K+ S+ +GF++TG LRPG QSP R VPPEI RPDYAVDGIPK +SPMLPW++EVK +DI MRAAG+VAREVLDLAGQAV GATTD++DRVCHEAAVERGAYPSPLNY GFPK
Sbjct: 78 LFMNKGFGAAKKKPPR------------------KKPSRRSGFAYTGELRPGTQSPTRPVPPEIGRPDYAVDGIPKGKSPMLPWIVEVKNEADIAAMRAAGKVAREVLDLAGQAVKVGATTDEIDRVCHEAAVERGAYPSPLNYQGFPK 208
BLAST of mRNA_H-elongata_contig85883.16171.1 vs. uniprot
Match: D8LNA9_ECTSI (Methionine aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNA9_ECTSI) HSP 1 Score: 171 bits (434), Expect = 6.240e-49 Identity = 99/161 (61.49%), Postives = 112/161 (69.57%), Query Frame = 1
Query: 1 RGAGRRLFMTKGFG-VTKKPDKXXXXXXXXXXXXXXXXXXXKRASK-----TTGFSFTGSLRPGLQSPPRSVPPEILRPDYAVDGIPKARSPMLPWVIEVKKASDIEGMRAAGRVAREVLDLAGQAVVAGATTDDVDRVCHEAAVERGAYPSPLNYHGFPK 465
RGA R L KGFG V KK K KRA+K ++GF++TGSLRPG+QSP R+VPPEI PDYA DG+PK +P WVIEVK DI GMRAAG+VAREVLDLAG+AV+ GATTDDVDR CHEAA+ERGAYPSPLNY GFPK
Sbjct: 77 RGA-RALAAKKGFGGVEKKAPKKTKVAKEVAA---------KRAAKASAVVSSGFAYTGSLRPGVQSPRRTVPPEIGHPDYAEDGMPKGGNPPPAWVIEVKTEEDIAGMRAAGKVAREVLDLAGKAVMVGATTDDVDRACHEAALERGAYPSPLNYFGFPK 227
BLAST of mRNA_H-elongata_contig85883.16171.1 vs. uniprot
Match: R1FPD2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FPD2_EMIHU) HSP 1 Score: 154 bits (388), Expect = 2.100e-43 Identity = 74/107 (69.16%), Postives = 84/107 (78.50%), Query Frame = 1
Query: 145 FSFTGSLRPGLQSPPRSVPPEILRPDYAVDGIPKARSPMLPWVIEVKKASDIEGMRAAGRVAREVLDLAGQAVVAGATTDDVDRVCHEAAVERGAYPSPLNYHGFPK 465
F ++G +RPG QSP RSVP I +PDY DG PKAR PMLPW I+ K +DIEGMRAAGR+AREVLDLAG AV G TT+ +D + HEAAV RGAYPSPLNYHGFPK
Sbjct: 13 FKYSGKVRPGKQSPKRSVPKSISKPDYWKDGQPKARGPMLPWQIQKKSEADIEGMRAAGRIAREVLDLAGAAVAPGVTTEAIDALVHEAAVSRGAYPSPLNYHGFPK 119
BLAST of mRNA_H-elongata_contig85883.16171.1 vs. uniprot
Match: R1EBL9_EMIHU (Peptidase_M24 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EBL9_EMIHU) HSP 1 Score: 154 bits (388), Expect = 1.100e-42 Identity = 74/107 (69.16%), Postives = 84/107 (78.50%), Query Frame = 1
Query: 145 FSFTGSLRPGLQSPPRSVPPEILRPDYAVDGIPKARSPMLPWVIEVKKASDIEGMRAAGRVAREVLDLAGQAVVAGATTDDVDRVCHEAAVERGAYPSPLNYHGFPK 465
F ++G +RPG QSP RSVP I +PDY DG PKAR PMLPW I+ K +DIEGMRAAGR+AREVLDLAG AV G TT+ +D + HEAAV RGAYPSPLNYHGFPK
Sbjct: 13 FKYSGKVRPGKQSPKRSVPKSISKPDYWKDGQPKARGPMLPWQIQKKSEADIEGMRAAGRIAREVLDLAGAAVAPGVTTEAIDALVHEAAVSRGAYPSPLNYHGFPK 119
BLAST of mRNA_H-elongata_contig85883.16171.1 vs. uniprot
Match: A0A7S2PP31_9STRA (Methionine aminopeptidase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PP31_9STRA) HSP 1 Score: 151 bits (381), Expect = 4.300e-41 Identity = 73/115 (63.48%), Postives = 89/115 (77.39%), Query Frame = 1
Query: 124 RASKTTGFSFTGSLRPGLQSPPRSVPPEILR-PDYAVDGIPKARSPMLPWVIEVKKASDIEGMRAAGRVAREVLDLAGQAVVAGATTDDVDRVCHEAAVERGAYPSPLNYHGFPK 465
R T+ F + GS+RPGLQ+P R VP E ++ PDYA+DG PK R + PWVIE KK +IE MRA+GR AREVLDLAG+AV G TTD++DR+ HEA++ERGAYPSPLNYH FPK
Sbjct: 80 RPKTTSNFQYAGSIRPGLQTPKRIVPSEKIKFPDYALDGQPKNRPALFPWVIETKKPEEIEKMRASGRCAREVLDLAGRAVRPGITTDEIDRIVHEASIERGAYPSPLNYHNFPK 194
BLAST of mRNA_H-elongata_contig85883.16171.1 vs. uniprot
Match: A0A7S4AZY3_CHRCT (Methionine aminopeptidase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4AZY3_CHRCT) HSP 1 Score: 150 bits (378), Expect = 4.820e-41 Identity = 74/113 (65.49%), Postives = 85/113 (75.22%), Query Frame = 1
Query: 127 ASKTTGFSFTGSLRPGLQSPPRSVPPEILRPDYAVDGIPKARSPMLPWVIEVKKASDIEGMRAAGRVAREVLDLAGQAVVAGATTDDVDRVCHEAAVERGAYPSPLNYHGFPK 465
A+K T F +TGS+RPG QSP R VP I +PDYA DG PKA P LPW IEVK DIEGMR AGRVAREVLDLA +AV G TTD +D++ H+ ++RG YPSPLNYHGFPK
Sbjct: 72 AAKDT-FKYTGSMRPGKQSPTRKVPKTIPKPDYAKDGRPKATGPSLPWQIEVKNEKDIEGMRVAGRVAREVLDLAHRAVAVGVTTDAIDQLVHDETIKRGGYPSPLNYHGFPK 183
BLAST of mRNA_H-elongata_contig85883.16171.1 vs. uniprot
Match: W7UC07_9STRA (Methionine aminopeptidase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC07_9STRA) HSP 1 Score: 150 bits (378), Expect = 1.300e-40 Identity = 69/115 (60.00%), Postives = 86/115 (74.78%), Query Frame = 1
Query: 121 KRASKTTGFSFTGSLRPGLQSPPRSVPPEILRPDYAVDGIPKARSPMLPWVIEVKKASDIEGMRAAGRVAREVLDLAGQAVVAGATTDDVDRVCHEAAVERGAYPSPLNYHGFPK 465
K+ +K F +TG L+PG+ SPPR VP +ILRPDYA+DG+PKAR P LPW+IEVK DI MRA+G VAREVLD G+ + G TTD++D + H ++RGAYPSPLNY GFPK
Sbjct: 118 KKEAKGDKFKYTGRLKPGVLSPPRDVPADILRPDYALDGMPKARDPPLPWMIEVKSPEDIAAMRASGLVAREVLDAVGRQIKVGMTTDEIDSIAHGETIKRGAYPSPLNYQGFPK 232
BLAST of mRNA_H-elongata_contig85883.16171.1 vs. uniprot
Match: A0A7S2MMP3_9EUKA (Methionine aminopeptidase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MMP3_9EUKA) HSP 1 Score: 147 bits (372), Expect = 5.240e-40 Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 1
Query: 145 FSFTGSLRPGLQSPPRSVPPEILRPDYAVDGIPKARSPMLPWVIEVKKASDIEGMRAAGRVAREVLDLAGQAVVAGATTDDVDRVCHEAAVERGAYPSPLNYHGFPK 465
F +TGS+RPG QSP R +P I+RPDYA DG+PKA+ P LPW +E+K A DIEGMR AGR+AREVLD AG+ V G TTD +D + + ++RGAYPSPLNYH FPK
Sbjct: 46 FQYTGSVRPGKQSPTRQIPRSIMRPDYADDGVPKAKGPFLPWQVEIKTAKDIEGMRMAGRIAREVLDAAGRMVAPGVTTDAIDALVTDETIKRGAYPSPLNYHKFPK 152
BLAST of mRNA_H-elongata_contig85883.16171.1 vs. uniprot
Match: A0A7S3RNP6_9SPIT (Methionine aminopeptidase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RNP6_9SPIT) HSP 1 Score: 145 bits (367), Expect = 5.790e-40 Identity = 71/107 (66.36%), Postives = 81/107 (75.70%), Query Frame = 1
Query: 145 FSFTGSLRPGLQSPPRSVPPEILRPDYAVDGIPKARSPMLPWVIEVKKASDIEGMRAAGRVAREVLDLAGQAVVAGATTDDVDRVCHEAAVERGAYPSPLNYHGFPK 465
F ++G +RPG QSP R+VP I +PDY DG PKAR P+LPW IEVK DIEGMRAAGR+AREVLD AG V G TTD +D + HEA + RGAYPSPLNYHGFPK
Sbjct: 19 FKYSGRVRPGRQSPRRTVPNGIPKPDYWKDGQPKARGPLLPWQIEVKSERDIEGMRAAGRIAREVLDTAGNYVRPGITTDAIDALVHEATIARGAYPSPLNYHGFPK 125
BLAST of mRNA_H-elongata_contig85883.16171.1 vs. uniprot
Match: A0A7R9VRZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VRZ9_9STRA) HSP 1 Score: 140 bits (353), Expect = 6.730e-40 Identity = 71/117 (60.68%), Postives = 88/117 (75.21%), Query Frame = 1
Query: 124 RASKTTGFSFTGSLRPGLQSPPRSVPPEIL---RPDYAVDGIPKARSPMLPWVIEVKKASDIEGMRAAGRVAREVLDLAGQAVVAGATTDDVDRVCHEAAVERGAYPSPLNYHGFPK 465
++ + + F++ GS+ PG QSP R V + L PDYA DGIPK SPMLPWVIEVK +I MRAAGRVAREVLD+AG+AV G TTD++D + HE +++RGAYPSPLNYHGFPK
Sbjct: 12 KSLQQSSFNYAGSVTPGKQSPQRVVDGDALGIAMPDYADDGIPKNSSPMLPWVIEVKTPEEILKMRAAGRVAREVLDIAGRAVRVGITTDEIDALVHEESLKRGAYPSPLNYHGFPK 128 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85883.16171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig85883.16171.1 >prot_H-elongata_contig85883.16171.1 ID=prot_H-elongata_contig85883.16171.1|Name=mRNA_H-elongata_contig85883.16171.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp MTKGFGVTKKPDKKKASSQKEAAAAAAAAAAAKRASKTTGFSFTGSLRPGback to top mRNA from alignment at H-elongata_contig85883:189..1994- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig85883.16171.1 ID=mRNA_H-elongata_contig85883.16171.1|Name=mRNA_H-elongata_contig85883.16171.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1806bp|location=Sequence derived from alignment at H-elongata_contig85883:189..1994- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig85883:189..1994- >mRNA_H-elongata_contig85883.16171.1 ID=mRNA_H-elongata_contig85883.16171.1|Name=mRNA_H-elongata_contig85883.16171.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig85883:189..1994- (Himanthalia elongata Himel1 dioecious)back to top |