mRNA_H-elongata_contig85852.16168.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85852.16168.1
Unique NamemRNA_H-elongata_contig85852.16168.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5JVQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.330e-15
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 303
            PP T A V +S +R+ +E + + E +G L  G F   D    P GR+ V S+W  ++K+++ G  VK K+R+VA+GF+Q PNVDY  ++SP   SA +K++
Sbjct:  527 PPMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSFVD--GTPEGRRPVSSKWRFTWKTNKDGKIVKFKARLVARGFSQTPNVDYFHSSSPCPSSASIKLM 625
[Close]
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.340e-15
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 303
            PP T A VA+S +R+ +E + + E  G L  G F   D    P GR+ V S+W  S+K+++ G     K+R+VA+GF+Q+PNVDY  ++SP   SA +K++
Sbjct:  290 PPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVD--GAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLM 388
[Close]
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.380e-15
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 303
            PP T A VA+S +R+ +E + + E  G L  G F   D    P GR+ V S+W  S+K+++ G     K+R+VA+GF+Q+PNVDY  ++SP   SA +K++
Sbjct:  736 PPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVD--GAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLM 834
[Close]
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.380e-15
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 303
            PP T A VA+S +R+ +E + + E  G L  G F   D    P GR+ V S+W  S+K+++ G   K K+R+VA+GF+Q+PNVDY  ++SP   SA + ++
Sbjct:  845 PPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVD--GAPEGRRPVSSKWCFSWKTNKEGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLM 943
[Close]
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.390e-15
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 303
            PP T A VA+S +R+ +E + + E  G L  G F   D    P GR+ V S+W  S+K+++ G     K+R+VA+GF+Q+PNVDY  ++SP   SA +K++
Sbjct: 1115 PPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVD--GAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLM 1213
[Close]
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.390e-15
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 303
            PP T A VA+S +R+ +E + + E  G L  G F   D    P GR+ V S+W  S+K+++ G     K+R+VA+GF+Q+PNVDY  ++SP   SA +K++
Sbjct: 1135 PPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVD--GAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLM 1233
[Close]
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.390e-15
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 303
            PP T A VA+S +R+ +E + + E  G L  G F   D    P GR+ V S+W  S+K+++ G     K+R+VA+GF+Q+PNVDY  ++SP   SA +K++
Sbjct: 1278 PPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVD--GAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLM 1376
[Close]
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.540e-15
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 303
            PP T A VA+S +R+  E + + E  G L  G F   D    P GR+ V S+W  S+K+++ G     K+R+VA+GF+Q+PNVDY  ++SP   SA +K++
Sbjct:  536 PPMTVAGVAKSVYRERLEQAMREEFEGHLGTGTFSFVD--GAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLM 634
[Close]
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.860e-15
Identity = 43/104 (41.35%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:    4 PATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVK-IIAVA 312
            P T  +V  S ++  +E + K E++G    G F  T  K +P GRK +GS+WV S+K++E G  V  K+RMVA+GF+Q+P +D+H  +S    +A +K +IAVA
Sbjct:  122 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTF--TKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVIAVA 223
[Close]
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5JSU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.680e-15
Identity = 40/101 (39.60%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 303
            PP T A V +S +R+ +E + + E +G L  G F   D    P GR+ V S+W  ++K+++ G   K K+R+VA+GF+Q+PNVDY  ++SP   SA +K++
Sbjct:  306 PPMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSFVD--GTPEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLM 404
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVQ8_9PHAE1.330e-1540.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE1.340e-1540.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.380e-1540.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE1.380e-1540.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.390e-1540.59Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.390e-1540.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.390e-1540.59Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JTV6_9PHAE2.540e-1540.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K282_9PHAE3.860e-1541.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSU1_9PHAE4.680e-1539.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85852contigH-elongata_contig85852:867..1181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score75.5
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog160860.XP_007358330.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs22B2X@155619,38DPC@33154,3H6HR@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931262.1227143-CDS-H-elongata_contig85852:866..11811622931262.1227143-CDS-H-elongata_contig85852:866..1181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85852 867..1181 +
1691679764.290049-CDS-H-elongata_contig85852:866..11811691679764.290049-CDS-H-elongata_contig85852:866..1181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85852 867..1181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85852.16168.1prot_H-elongata_contig85852.16168.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85852 867..1181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85852.16168.1

>prot_H-elongata_contig85852.16168.1 ID=prot_H-elongata_contig85852.16168.1|Name=mRNA_H-elongata_contig85852.16168.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVG
SRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKI
IAVAA
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mRNA from alignment at H-elongata_contig85852:867..1181+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85852.16168.1 ID=mRNA_H-elongata_contig85852.16168.1|Name=mRNA_H-elongata_contig85852.16168.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=315bp|location=Sequence derived from alignment at H-elongata_contig85852:867..1181+ (Himanthalia elongata Himel1 dioecious)
CCTCCGGCAACGCAGGCCGAAGTTGCGAGGTCATCCTTCAGGAAAGCGTT
TGAATACTCGCAGAAGGTAGAACTCAATGGGTTGTTAGATGTAGGATGTT
TCGAGGTGACTGATACTAAGGCAGTTCCCCGTGGAAGAAAGATAGTTGGG
TCTCGCTGGGTTCACAGCTATAAGAGTGACGAGCTTGGTAATTGCGTCAA
GACTAAATCACGGATGGTTGCGAAAGGGTTTACTCAGATGCCGAACGTGG
ACTATCATGAGACAACATCTCCCACATCCGTATCGGCACCTGTGAAGATA
ATAGCAGTTGCTGCA
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Coding sequence (CDS) from alignment at H-elongata_contig85852:867..1181+

>mRNA_H-elongata_contig85852.16168.1 ID=mRNA_H-elongata_contig85852.16168.1|Name=mRNA_H-elongata_contig85852.16168.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig85852:867..1181+ (Himanthalia elongata Himel1 dioecious)
CCTCCGGCAACGCAGGCCGAAGTTGCGAGGTCATCCTTCAGGAAAGCGTT
TGAATACTCGCAGAAGGTAGAACTCAATGGGTTGTTAGATGTAGGATGTT
TCGAGGTGACTGATACTAAGGCAGTTCCCCGTGGAAGAAAGATAGTTGGG
TCTCGCTGGGTTCACAGCTATAAGAGTGACGAGCTTGGTAATTGCGTCAA
GACTAAATCACGGATGGTTGCGAAAGGGTTTACTCAGATGCCGAACGTGG
ACTATCATGAGACAACATCTCCCACATCCGTATCGGCACCTGTGAAGATA
ATAGCAGTTGCTGCACCTCCGGCAACGCAGGCCGAAGTTGCGAGGTCATC
CTTCAGGAAAGCGTTTGAATACTCGCAGAAGGTAGAACTCAATGGGTTGT
TAGATGTAGGATGTTTCGAGGTGACTGATACTAAGGCAGTTCCCCGTGGA
AGAAAGATAGTTGGGTCTCGCTGGGTTCACAGCTATAAGAGTGACGAGCT
TGGTAATTGCGTCAAGACTAAATCACGGATGGTTGCGAAAGGGTTTACTC
AGATGCCGAACGTGGACTATCATGAGACAACATCTCCCACATCCGTATCG
GCACCTGTGAAGATAATAGCAGTTGCTGCA
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