mRNA_H-elongata_contig85848.16167.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig85848.16167.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 172 bits (436), Expect = 1.950e-45 Identity = 87/228 (38.16%), Postives = 142/228 (62.28%), Query Frame = 1
Query: 16 VYKQVARPKDKLVAGTKVLYKRKVGQDSKVEKYKCRLVAQGFWLVEGVHYTEKYSPTLSTASIRMLLATAAAKDSELRHFDVEQAFLKADIDEELYREISEEYQKFPGAVGRLKKVIYGLVQARRCWNNKFCGDMAAIGFQQGKLDPCVFRKVVDSEAEVVVVVHVDDILTHAKDKAIMDRFTAELGQKFKLKDIGDARYYMGCHITRNRKARELKIDQHLYVESMAE 699
V+++V RP+D+ + G+K ++K K G D +VEKYK RLVAQGF VEG+ Y E ++P + SIR+LLA AA D E+ DV+ AFL +++EE+Y ++ ++ AV RLKK +YGL QA R W K ++ +GF + + D CVF K +D ++ V +VDD + + ++ + ++LG +F + D+G+ + + +TRNR+ R +++ Q Y+E + E
Sbjct: 1026 VFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAV-YVDDNMVLSDSLDLVTKTKSDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILE 1252
BLAST of mRNA_H-elongata_contig85848.16167.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT) HSP 1 Score: 159 bits (403), Expect = 4.770e-41 Identity = 87/238 (36.55%), Postives = 147/238 (61.76%), Query Frame = 1
Query: 1 MVENCVYKQVARPKDKLVAGTKVLYKRKVGQDSKVEKYKCRLVAQGFWLVEGVHYTEKYSPTLSTASIRMLLATAAAKDSELRHFDVEQAFLKADIDEELYREISEEY--QKFPGAVGRLKKVIYGLVQARRCWNNKFCGDMAAIGFQQGKLDPCVFRKVV-DSEAEVVVVVHVDDILTHAKDKAIMDRFTAELGQKFKLKDIGDARYYMGCHITRNRKARELKIDQHLYVESMAETF 705
++EN ++ V+ PK K V G+K ++K K ++ V++YK RLVAQG+ EGV Y+E +SP + +IR LLA + AK+ E+ DV+ AFL+ ++ EE+Y + Y ++ P V +LKK IYGL Q+ RCWNN + + G++Q + DPC++ K + D +++ +HVDDIL + D ++ +G KFK+ D+G+ ++ +G I R+R+ ++ I Q Y++ + + F
Sbjct: 749 LIENETWELVSLPKGKNVVGSKWVFKVKRDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNL-EEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQMESDPCLYMKSIRDQNGVIILSIHVDDILLFSNDSCMLSEEKKLIGLKFKVDDMGEVKHVLGMVIRRDRRKGKMMISQSTYLQGILKRF 985
BLAST of mRNA_H-elongata_contig85848.16167.1 vs. uniprot
Match: A0A8J4BUU7_9CHLO (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BUU7_9CHLO) HSP 1 Score: 149 bits (377), Expect = 1.210e-40 Identity = 87/229 (37.99%), Postives = 137/229 (59.83%), Query Frame = 1
Query: 25 QVARPKDKLVAGTKVL-----YKRKVGQDSKVEKYKCRLVAQGFWLVEGVHYTEKYSPTLSTASIRMLLATAAAKDSELRHFDVEQAFLKADIDEELYREISEEYQ-KFPGAVGRLKKVIYGLVQARRCWNNKFCGDMAAIGFQQGKLDPCVFRKVVDSEAEVVVVVHVDDILTHAKDKAIMDRFTAELGQKFKLKDIGDARYYMGCHITRNRKARELKIDQHLYVESM 693
++ARP + GT++L YK K G D ++E++K RLVA+G+ G+ Y E ++PT AS+R LLA A+AK + DV AFL +++EEL+ + Y+ K P RLK+ IYGL QA RCW K + +GF+ + DP +F K D V ++VHVDDI+T + D ++ + A +G+ FK++D+G+A+ ++G I+R E+K+ Q Y+E +
Sbjct: 15 ELARPPE----GTRLLPCRWVYKVKRGADGEIERFKARLVAKGYEQRAGIDYGELFAPTSRFASLRALLAVASAKGMPIHQLDVSTAFLNGELEEELWMQQPPGYESKDPNQACRLKRSIYGLKQAPRCWYVKLVAALDKLGFKPSQADPALFIKK-DENGIVYLLVHVDDIVTTSDDVELIKKVKAAVGEAFKIRDLGEAKVFLGMEISRGENG-EVKLSQQRYIEEL 237
BLAST of mRNA_H-elongata_contig85848.16167.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 157 bits (398), Expect = 2.350e-40 Identity = 89/243 (36.63%), Postives = 143/243 (58.85%), Query Frame = 1
Query: 1 MVENCVYKQVARPKDKLVAGTKVLYKRKVGQDSKVEKYKCRLVAQGFWLVEGVHYTEKYSPTLSTASIRMLLATAAAKDSELRHFDVEQAFLKADIDEELYREISEEYQ--KFPGAVGRLKKVIYGLVQARRCWNNKFCGDMAAIGFQQGKLDPCVFRKVVDSEAE----VVVVVHVDDILTHAKDKAIMDRFTAELGQKFKLKDIGDARYYMGCHITRNRKARELKIDQHLYVESMAETFDV 711
++EN ++ V P DK + G++ ++K K D VEK+K RLVAQG+ EG+ Y E +SP + SIR LLA A D E+ DV AFL+ D+ +E+Y + E Y+ + P V +LKK +YGL Q+ RCWN+ + + G++Q D C++ K V + V++ +HVDDIL + D +++ +G KFK++D+G+ + +G I R+R +R L I Q Y+E + + F++
Sbjct: 859 LMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNM 1101
BLAST of mRNA_H-elongata_contig85848.16167.1 vs. uniprot
Match: A0A8J4LT00_9CHLO (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LT00_9CHLO) HSP 1 Score: 150 bits (380), Expect = 4.520e-39 Identity = 88/229 (38.43%), Postives = 137/229 (59.83%), Query Frame = 1
Query: 25 QVARPKDKLVAGTKVL-----YKRKVGQDSKVEKYKCRLVAQGFWLVEGVHYTEKYSPTLSTASIRMLLATAAAKDSELRHFDVEQAFLKADIDEELYREISEEYQ-KFPGAVGRLKKVIYGLVQARRCWNNKFCGDMAAIGFQQGKLDPCVFRKVVDSEAEVVVVVHVDDILTHAKDKAIMDRFTAELGQKFKLKDIGDARYYMGCHITRNRKARELKIDQHLYVESM 693
++ARP + GT++L YK K G D ++E++K RLVA+G+ G+ Y E ++PT AS+R LLA AAAK + DV AFL +++EEL+ + Y+ K P RLK+ IYGL QA RCW K + +GF+ + DP +F K D V ++VHVDDI+T + D ++ + A +G+ FK++D+G+A+ ++G I+R E+K+ Q Y+E +
Sbjct: 23 ELARPPE----GTRLLPCRWVYKVKRGADGEIERFKVRLVAKGYEQRAGIDYGELFAPTSRFASLRALLAVAAAKGMPIHQLDVSTAFLNGELEEELWMQQPPGYESKDPNLACRLKRSIYGLKQAPRCWYVKLVAALDKLGFKPSQADPALFIKK-DENGIVYLLVHVDDIITTSDDVELIKKVKAAVGEAFKIRDLGEAKVFLGMEISRGENG-EVKLSQRRYIEEL 245
BLAST of mRNA_H-elongata_contig85848.16167.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI) HSP 1 Score: 152 bits (384), Expect = 1.050e-38 Identity = 85/237 (35.86%), Postives = 136/237 (57.38%), Query Frame = 1
Query: 1 MVENCVYKQVARPKDKLVAGTKVLYKRKVGQDSKVEKYKCRLVAQGFWLVEGVHYTEKYSPTLSTASIRMLLATAAAKDSELRHFDVEQAFLKADIDEELYREISEEYQKFPGAVGRLKKVIYGLVQARRCWNNKFCGDMAAIGFQQGKLDPCVFRKVVDSEAEVVVVVHVDDILTHAKDKAIMDRFTAELGQKFKLKDIGDARYYMGCHITRNRKARELKIDQHLYVESMAETFDV 711
+V+N Y+ V P K K +YK K + + +YK RLV +G V G+ + E YSP + +S+R L++ AA KD ++ H DV+ A+L D++EE+Y + + G V RLKK +YGL QA RCWN K +A + F + K DPC+F + +S A V+V + VDD++ + + + + L F++KD+G +G ++TR+R R+L IDQ Y+E + + F +
Sbjct: 251 LVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGDR--RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIFVRNTES-AIVIVALWVDDVIVFSDNAGEKSKVKSSLAHHFEMKDLGPIHRCLGMNVTRDRARRQLSIDQTHYIEQVLKRFSM 484
BLAST of mRNA_H-elongata_contig85848.16167.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI) HSP 1 Score: 152 bits (384), Expect = 1.750e-38 Identity = 85/237 (35.86%), Postives = 136/237 (57.38%), Query Frame = 1
Query: 1 MVENCVYKQVARPKDKLVAGTKVLYKRKVGQDSKVEKYKCRLVAQGFWLVEGVHYTEKYSPTLSTASIRMLLATAAAKDSELRHFDVEQAFLKADIDEELYREISEEYQKFPGAVGRLKKVIYGLVQARRCWNNKFCGDMAAIGFQQGKLDPCVFRKVVDSEAEVVVVVHVDDILTHAKDKAIMDRFTAELGQKFKLKDIGDARYYMGCHITRNRKARELKIDQHLYVESMAETFDV 711
+V+N Y+ V P K K +YK K + + +YK RLV +G V G+ + E YSP + +S+R L++ AA KD ++ H DV+ A+L D++EE+Y + + G V RLKK +YGL QA RCWN K +A + F + K DPC+F + +S A V+V + VDD++ + + + + L F++KD+G +G ++TR+R R+L IDQ Y+E + + F +
Sbjct: 856 LVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGDR--RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIFVRNTES-AIVIVALWVDDVIVFSDNAGEKSKVKSSLAHHFEMKDLGPIHRCLGMNVTRDRARRQLSIDQTHYIEQVLKRFSM 1089
BLAST of mRNA_H-elongata_contig85848.16167.1 vs. uniprot
Match: A0A8J4FPZ7_9CHLO (Uncharacterized protein n=20 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FPZ7_9CHLO) HSP 1 Score: 152 bits (383), Expect = 2.390e-38 Identity = 87/229 (37.99%), Postives = 136/229 (59.39%), Query Frame = 1
Query: 25 QVARPKDKLVAGTKVL-----YKRKVGQDSKVEKYKCRLVAQGFWLVEGVHYTEKYSPTLSTASIRMLLATAAAKDSELRHFDVEQAFLKADIDEELYREISEEYQ-KFPGAVGRLKKVIYGLVQARRCWNNKFCGDMAAIGFQQGKLDPCVFRKVVDSEAEVVVVVHVDDILTHAKDKAIMDRFTAELGQKFKLKDIGDARYYMGCHITRNRKARELKIDQHLYVESM 693
++ARP + GT++L YK K G D ++E++K LVA+G+ G+ Y E ++PT AS+R LLA AAAK + DV AFL +++EEL+ + Y+ K P RLK+ IYGL QA RCW K + +GF+ + DP +F K D V ++VHVDDI+T + D ++ + A +G+ FK++D+G+A+ ++G I+R E+K+ Q Y+E +
Sbjct: 879 ELARPPE----GTRLLPCRWVYKVKRGADGEIERFKAHLVAKGYEQRAGIDYGELFAPTSRFASLRALLAVAAAKGMPIHQLDVSTAFLNGELEEELWMQQPPGYESKDPNLACRLKRSIYGLKQAPRCWYVKLVAALDKLGFKPSQADPALFIKKKDENGIVYLLVHVDDIVTTSDDVELIKKVKAAVGEAFKIRDLGEAKVFLGMEISRGENG-EVKLTQQRYIEEL 1102
BLAST of mRNA_H-elongata_contig85848.16167.1 vs. uniprot
Match: A0A1Y1IVX6_KLENI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IVX6_KLENI) HSP 1 Score: 151 bits (381), Expect = 4.240e-38 Identity = 87/225 (38.67%), Postives = 134/225 (59.56%), Query Frame = 1
Query: 1 MVENCVYKQVARPKDKLVAGTKVLYKRKVGQDSKVEKYKCRLVAQGFWLVEGVHYTEKYSPTLSTASIRMLLATAAAKDSELRHFDVEQAFLKADIDEELYREISEEYQKF-PGAVGRLKKVIYGLVQARRCWNNKFCGDMAAIGFQQGKLDPCVFRKVVDSEAEVVVVVHVDDILTHAKDKAIMDRFTAELGQKFKLKDIGDARYYMGCHITRNRKARELKIDQ 672
++EN ++ V +P+ K +YK K +E++K RLVA+GF +GV + E Y+P ++R LL AA+D EL DV+ AFL +++EE+Y + + Y++ P V RLKK IYGL QA R W+ K ++ I F+ + D +F V+D E V VVV VDDIL AK + + + A L +KF ++D+G A Y++G +TR+R+AR +K+ Q
Sbjct: 587 LLENGTWELVPKPEGVKPVPMKWVYKIKRDAAGNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPETVCRLKKTIYGLRQAPRAWHQKLKTELGEIEFRASESDAALFTGVIDGE-RVWVVVWVDDILIAAKGEQRLAKVKAHLSEKFDVRDLGPAEYFLGMELTRDRRARTIKLTQ 810
BLAST of mRNA_H-elongata_contig85848.16167.1 vs. uniprot
Match: A0A8J4GC79_9CHLO (Uncharacterized protein (Fragment) n=13 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GC79_9CHLO) HSP 1 Score: 150 bits (380), Expect = 5.680e-38 Identity = 88/229 (38.43%), Postives = 137/229 (59.83%), Query Frame = 1
Query: 25 QVARPKDKLVAGTKVL-----YKRKVGQDSKVEKYKCRLVAQGFWLVEGVHYTEKYSPTLSTASIRMLLATAAAKDSELRHFDVEQAFLKADIDEELYREISEEYQ-KFPGAVGRLKKVIYGLVQARRCWNNKFCGDMAAIGFQQGKLDPCVFRKVVDSEAEVVVVVHVDDILTHAKDKAIMDRFTAELGQKFKLKDIGDARYYMGCHITRNRKARELKIDQHLYVESM 693
++ARP + GT++L YK K G D ++E++K RLVA+G+ G+ Y E ++PT AS+R LLA AAAK + DV AFL +++EEL+ + Y+ K P RLK+ IYGL QA RCW K + +GF+ + DP +F K D V ++VHVDDI+T + D ++ + A +G+ FK++D+G+A+ ++G I+R E+K+ Q Y+E +
Sbjct: 777 ELARPPE----GTRLLPCRWVYKVKRGADGEIERFKARLVAKGYEQRAGIDYGELFAPTSRFASLRALLAVAAAKGMPIHQLDVSTAFLNGELEEELWMQQPPGYESKDPNQACRLKRSIYGLKQAPRCWYVKLVAALDKLGFKPSQADPALFIKK-DENGIVYLLVHVDDIVTTSDDVELIKKVKAAVGEAFKIRDLGEAKVFLGMEISRGENG-EVKLSQQRYIEEL 999 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85848.16167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig85848.16167.1 >prot_H-elongata_contig85848.16167.1 ID=prot_H-elongata_contig85848.16167.1|Name=mRNA_H-elongata_contig85848.16167.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp MVENCVYKQVARPKDKLVAGTKVLYKRKVGQDSKVEKYKCRLVAQGFWLVback to top mRNA from alignment at H-elongata_contig85848:1125..1853- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig85848.16167.1 ID=mRNA_H-elongata_contig85848.16167.1|Name=mRNA_H-elongata_contig85848.16167.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=729bp|location=Sequence derived from alignment at H-elongata_contig85848:1125..1853- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig85848:1125..1853- >mRNA_H-elongata_contig85848.16167.1 ID=mRNA_H-elongata_contig85848.16167.1|Name=mRNA_H-elongata_contig85848.16167.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig85848:1125..1853- (Himanthalia elongata Himel1 dioecious)back to top |