mRNA_H-elongata_contig85762.16159.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85762.16159.1
Unique NamemRNA_H-elongata_contig85762.16159.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85762.16159.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 4.520e-12
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   28 LKVPNTFKEAMGLPQAAQWKAAADKEITSLKKHDIYELVPASSVSAEQKMVGPRWVNKIRAD 213
            +K+PNT+ EAM  PQ  +WK A  KE+ +++KHD+Y LVP SSV   +K++G ++V K + D
Sbjct:  183 IKIPNTYDEAMSSPQREEWKGACSKEMDNMRKHDVYNLVPLSSVLKGEKILGTKFVFKKKLD 244
[Close]
BLAST of mRNA_H-elongata_contig85762.16159.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 8.550e-12
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   28 LKVPNTFKEAMGLPQAAQWKAAADKEITSLKKHDIYELVPASSVSAEQKMVGPRWVNKIRAD 213
            +K+PNT+ EAM  PQ  +WK A  KE+ +L+KH++Y LVP SSV   +K++G ++V K + D
Sbjct:  564 IKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 625
[Close]
BLAST of mRNA_H-elongata_contig85762.16159.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 8.570e-12
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   28 LKVPNTFKEAMGLPQAAQWKAAADKEITSLKKHDIYELVPASSVSAEQKMVGPRWVNKIRAD 213
            +K+PNT+ EAM  PQ  +WK A  KE+ +L+KH++Y LVP SSV   +K++G ++V K + D
Sbjct:  339 IKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 400
[Close]
BLAST of mRNA_H-elongata_contig85762.16159.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 8.620e-12
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   28 LKVPNTFKEAMGLPQAAQWKAAADKEITSLKKHDIYELVPASSVSAEQKMVGPRWVNKIRAD 213
            +K+PNT+ EAM  PQ  +WK A  KE+ +L+KH++Y LVP SSV   +K++G ++V K + D
Sbjct:  564 IKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 625
[Close]
BLAST of mRNA_H-elongata_contig85762.16159.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 8.620e-12
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   28 LKVPNTFKEAMGLPQAAQWKAAADKEITSLKKHDIYELVPASSVSAEQKMVGPRWVNKIRAD 213
            +K+PNT+ EAM  PQ  +WK A  KE+ +L+KH++Y LVP SSV   +K++G ++V K + D
Sbjct:  564 IKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 625
[Close]
BLAST of mRNA_H-elongata_contig85762.16159.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 8.630e-12
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   28 LKVPNTFKEAMGLPQAAQWKAAADKEITSLKKHDIYELVPASSVSAEQKMVGPRWVNKIRAD 213
            +K+PNT+ EAM  PQ  +WK A  KE+ +L+KH++Y LVP SSV   +K++G ++V K + D
Sbjct:  564 IKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 625
[Close]
BLAST of mRNA_H-elongata_contig85762.16159.1 vs. uniprot
Match: A0A6H5KH19_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH19_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.580e-11
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   28 LKVPNTFKEAMGLPQAAQWKAAADKEITSLKKHDIYELVPASSVSAEQKMVGPRWVNKIRAD 213
            +K+PNT+ EAM  PQ  +WK A  KE+ +L+KH++Y LVP SSV   +K++G ++V K   D
Sbjct:  144 IKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKNLD 205
[Close]
BLAST of mRNA_H-elongata_contig85762.16159.1 vs. uniprot
Match: A0A6H5K1T7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.920e-11
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   28 LKVPNTFKEAMGLPQAAQWKAAADKEITSLKKHDIYELVPASSVSAEQKMVGPRWVNKIRAD 213
            +K+PNT+ EAM  PQ  +WK A  KE+  L+KH++Y LVP SSV   +K++G ++V K + D
Sbjct:  332 IKIPNTYDEAMSSPQREEWKGACSKEMDYLRKHNVYNLVPFSSVPKGEKILGTKFVFKNKLD 393
[Close]
BLAST of mRNA_H-elongata_contig85762.16159.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.990e-11
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   28 LKVPNTFKEAMGLPQAAQWKAAADKEITSLKKHDIYELVPASSVSAEQKMVGPRWVNKIRAD 213
            +K+PNT+ EAM  PQ  +WK A  KE+ +L+KH++Y LVP SSV   +K++G ++  K + D
Sbjct:  564 IKIPNTYDEAMSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVRKGEKILGTKFAFKKKLD 625
[Close]
BLAST of mRNA_H-elongata_contig85762.16159.1 vs. uniprot
Match: A0A6H5KBP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP9_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 5.160e-11
Identity = 28/58 (48.28%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   28 LKVPNTFKEAMGLPQAAQWKAAADKEITSLKKHDIYELVPASSVSAEQKMVGPRWVNK 201
            +K PNT+ EAM  PQ  +WK A  KE+ +L+KH++Y LVP SSV+  +K++ P++V K
Sbjct:  323 IKTPNTYDEAMSSPQHEEWKGACSKEMDNLRKHNVYNLVPLSSVTKGEKILAPQFVFK 380
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85762.16159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTY2_9PHAE4.520e-1246.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K500_9PHAE8.550e-1246.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KE92_9PHAE8.570e-1246.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRJ1_9PHAE8.620e-1246.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE8.620e-1246.77Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE8.630e-1246.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KH19_9PHAE1.580e-1146.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1T7_9PHAE2.920e-1146.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1R7_9PHAE2.990e-1145.16Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KBP9_9PHAE5.160e-1148.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85762contigH-elongata_contig85762:2353..2574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931260.847032-CDS-H-elongata_contig85762:2352..25741622931260.847032-CDS-H-elongata_contig85762:2352..2574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85762 2353..2574 +
1691679763.962101-CDS-H-elongata_contig85762:2352..25741691679763.962101-CDS-H-elongata_contig85762:2352..2574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85762 2353..2574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85762.16159.1prot_H-elongata_contig85762.16159.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85762 2353..2574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85762.16159.1

>prot_H-elongata_contig85762.16159.1 ID=prot_H-elongata_contig85762.16159.1|Name=mRNA_H-elongata_contig85762.16159.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
KQFGGGRTKLKVPNTFKEAMGLPQAAQWKAAADKEITSLKKHDIYELVPA
SSVSAEQKMVGPRWVNKIRADQF*
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mRNA from alignment at H-elongata_contig85762:2353..2574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85762.16159.1 ID=mRNA_H-elongata_contig85762.16159.1|Name=mRNA_H-elongata_contig85762.16159.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig85762:2353..2574+ (Himanthalia elongata Himel1 dioecious)
AAACAATTCGGGGGGGGGAGAACCAAACTGAAGGTCCCGAACACTTTCAA
GGAGGCTATGGGCCTCCCCCAAGCGGCACAATGGAAGGCGGCGGCAGACA
AGGAGATCACCAGCCTCAAGAAGCACGACATCTACGAGTTGGTGCCTGCG
TCGTCCGTCTCTGCTGAACAGAAAATGGTTGGCCCACGCTGGGTCAACAA
AATCAGGGCCGATCAGTTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig85762:2353..2574+

>mRNA_H-elongata_contig85762.16159.1 ID=mRNA_H-elongata_contig85762.16159.1|Name=mRNA_H-elongata_contig85762.16159.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig85762:2353..2574+ (Himanthalia elongata Himel1 dioecious)
AAACAATTCGGGGGGGGGAGAACCAAACTGAAGGTCCCGAACACTTTCAA
GGAGGCTATGGGCCTCCCCCAAGCGGCACAATGGAAGGCGGCGGCAGACA
AGGAGATCACCAGCCTCAAGAAGCACGACATCTACGAGTTGGTGCCTGCG
TCGTCCGTCTCTGCTGAACAGAAAATGGTTGGCCCACGCTGGGTCAACAA
AATCAGGGCCGATCAGTTTTAAAAACAATTCGGGGGGGGGAGAACCAAAC
TGAAGGTCCCGAACACTTTCAAGGAGGCTATGGGCCTCCCCCAAGCGGCA
CAATGGAAGGCGGCGGCAGACAAGGAGATCACCAGCCTCAAGAAGCACGA
CATCTACGAGTTGGTGCCTGCGTCGTCCGTCTCTGCTGAACAGAAAATGG
TTGGCCCACGCTGGGTCAACAAAATCAGGGCCGATCAGTTTTAA
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