mRNA_H-elongata_contig8573.16158.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8573.16158.1
Unique NamemRNA_H-elongata_contig8573.16158.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 226 bits (577), Expect = 4.310e-65
Identity = 138/391 (35.29%), Postives = 223/391 (57.03%), Query Frame = 1
Query:    1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEF---------PGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVK--KGSKIPARSGVPPFLKADEPRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQE 1140
            E++S++ N  +K V +P  +  +G + ++     + G+V +YK RLVA+G+ +  G+ Y E YS      S+   LA   A+  E+   D D AFL  +++EE+Y+E+PE  +E            VV  L +++YGL QA + WN      + + GF+ A AD CV+ +  +GE E +V +++DD+L  +++K  I      + +KF++K LG AR+ +G  I  + + R L I +  Y E +++ F  +  K    P   GV    KADEP+  E+K +M++ PY   VG+LM  A  TRP+I+ +V  ++RF +NPG+ +  A +K+++YLL TK+ GI Y G   G   EAY+D+D+  + D RRSVSG +LML    + W S  Q+
Sbjct:   88 ELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQK 475          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A6A3V8M8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3V8M8_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.180e-64
Identity = 136/391 (34.78%), Postives = 221/391 (56.52%), Query Frame = 1
Query:    1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEF---------PGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVK--KGSKIPARSGVPPFLKADEPRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQE 1140
            E+ S++ N  +  V +P  +  +G + ++     + G+V +YK RLVA+G+ +  G+ Y E YS      SI   LA  +A+  E+   D D AFL   ++EE+Y+E+PE  +E            +V  L +++YGL QA + WN      + ++GF+ A AD CV+ +  +GE E +V +++DD+L  +++KT I      + +KF++K LG +R+ +G  I  + + R L I +  Y E +++ F  +  K    P   GV    KADEP+  E+K +M++ PY   VG+LM  A  TRP+I+ +V  ++RF +NPG+    A +K+++YLL TK+ GI Y G      +EAY+D D+  + D RRSVSG +LML    + W S  Q+
Sbjct:   30 ELESLIANKTWMLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSILAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLRELLELAEAEGEDAIVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRSRFILGIEIDYDMERRTLGISQKAYTESIIKKFAQENVKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKRWDAGIKVVRYLLKTKDVGIVYDGLLVAQ-LEAYSDEDWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQK 417          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI)

HSP 1 Score: 219 bits (559), Expect = 4.850e-63
Identity = 138/387 (35.66%), Postives = 209/387 (54.01%), Query Frame = 1
Query:    1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQ--EFPGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVKKGSKIPARSGVPPFLKADE------PRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQ 1137
            EM+SM DN V+  V  PK    +G K ++K      G + +YK RLVA+GF + EG+ Y E +S   +  S  + +A  A  D EL   D   AFL  +IDE +Y+  PE ++  +   +V RL ++IYGL QA + W  KF   +T+ GFK+   D C++ K   G   +++V+++DDIL  +     +   +  L  KF +K LG+A + +G  I  +     L + +  Y++ ++  F +   +      G  P  K D+      P+N  EK++M  FPY  AVG+LM     TRP+IA  V  + R+  NPG  + K   ++M+YL  TK++ +TY  +   L I AY+DSDF   LD+RRS SG + MLA G +SW S  Q
Sbjct:   29 EMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLKF-SGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAP-----GDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAVSWKSVKQ 408          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 221 bits (563), Expect = 1.580e-62
Identity = 135/391 (34.53%), Postives = 223/391 (57.03%), Query Frame = 1
Query:    1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEF---------PGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVK--KGSKIPARSGVPPFLKADEPRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQE 1140
            E++S++ N  +K V +P  +  +G + ++     + G+V +YK RLVA+G+ +  G+ Y E YS      SI   LA  +A+  E+   D D AFL   ++EE+Y+E+ E  +E            VV  L +++YGL QA + WN      + ++GF+ A  D CV+ +  +GE E +V +++DD+L  +++K  I      + +KF++K +G AR+ +G  I  + + R L I +  Y E +++ F  +  K    P   GV    KADEP+  E+K +M++ PY   VG+LM  +  TRP+I+ +V  ++RF +NPG+ +  A +K+++YLL TK+ GI Y G   G  +EAY+D+D+  + D RRSVSG +LML    + W S  Q+
Sbjct:  153 ELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQK 540          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A2K3LA50_TRIPR (Putative retrotransposon Ty1-copia subclass protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LA50_TRIPR)

HSP 1 Score: 223 bits (569), Expect = 3.740e-62
Identity = 140/387 (36.18%), Postives = 210/387 (54.26%), Query Frame = 1
Query:    1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEFPG--VVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVKKGSKIPARSGVPPFLKADE------PRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQ 1137
            EM SMV N V+  V  P     +G K ++K      G +E+YK RLVA+GF + EG+ YTE +S      S  + +A  A  + EL   D   AFL   ++EE+Y++ PE +    G  +V +LN++IYGL QA + W  KF + +T+ GF++   D C+++KV  G     +V+++DDIL     K  +      L + F +K +G+A Y +G  I  +     L + +  Y+  ++E F++K  S       V P +K D       P+N  E+E M+N PY  AVG+LM     TRP+IA +V  + R+  NPG  + KA  K+M+YL  TKN+ + Y      L +  Y+DSD+   +DTR+S SG V MLA G +SW S  Q
Sbjct:  455 EMNSMVSNKVWDLVTLPNGVKAIGCKWVFKTKRDSQGNIERYKARLVAKGFTQREGIDYTETFSPVSKKDSFRVIMALVAHFNFELHQMDVKTAFLNGSLEEEVYMKQPEGFYSSEGENLVCKLNRSIYGLKQASRQWYLKFHEVITSFGFEENVMDQCIYQKV-SGSHICFLVLYVDDILLATNDKGMLYEVKQFLSRNFDMKDMGEASYVIGIKIHRDRNRGILGLSQEAYINKVLERFNMKNCSP-----SVAPIVKGDRFELSQCPQNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAYAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKNFMLMYKRTD-NLEVIGYSDSDYAGCIDTRKSTSGYVFMLASGAVSWRSAKQ 834          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 223 bits (569), Expect = 6.460e-62
Identity = 136/391 (34.78%), Postives = 223/391 (57.03%), Query Frame = 1
Query:    1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEF---------PGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVK--KGSKIPARSGVPPFLKADEPRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQE 1140
            E+ S++ N  +K V +P  +  +G + ++     + G+V +YK RLVA+G+ +  G+ Y E YS      SI   L   +A+  E+   D D AFL   ++ E+Y+E+PEE +E            VV  L +++YGL QA + WN     ++ ++GF+ A AD CV+ +  +GE E +V +++DD+L  +++   I      + +KF++K +G AR+ +G  I  + + R L I +  Y E +++ F  +  K    P   GV    KADEP+  E+K +M+  PY   VG+LM  A  TRP+I+ +V  ++RF +NPG+ +  A +K+++YLL TK+ GI Y G   G  +EAY+D+D+  + D RRSVSG +LML +  + W S  Q+
Sbjct:  419 ELESLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQK 806          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A225UK66_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UK66_9STRA)

HSP 1 Score: 214 bits (545), Expect = 9.430e-62
Identity = 137/393 (34.86%), Postives = 220/393 (55.98%), Query Frame = 1
Query:    1 EMRSMVDNCVYKQVARPKDKLVVGTKMLY--KRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEF---------PGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVK--KGSKIPARSGVPPFLKADEPRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQE 1140
            E+ S+  N  +K V RP  +  +G + ++  KRN  + G   ++K RLVA+G+ +  G+ Y E Y+      SI   LA   A+  E+   D D AFL   +DEE+Y+E+PE  +E            VV  L +++YGL QA + WN      +  +GFK A AD CV+ +  +G+ E +V +++DD+L  ++ K  I      + +KF++K LG AR+ +G  I  +   + L I +  Y E +++ F  +  K S +P    +   +K D P+  E+K +M++ PY   +G+LM  A  TRP+IA  V  ++RF +NPG+A+  A +K+++YLL TK+ GITY G   G  + AY+D+D+  + D RRSVSG +LM+    + W S  Q+
Sbjct:   30 ELESLTANKTWKLVPRPTHQRPIGCRWVFALKRNDKEKG---EHKARLVAKGYSQRHGIDYEETYAPVAYLNSIRAVLAKCCAEGFEIEQCDVDTAFLYGKLDEEIYMELPEGLRELLTLADAEGEEDVVCLLLQSLYGLKQASRVWNETIDGHLKGMGFKAADADPCVYTRG-EGDDECIVCLYVDDMLIASRDKDVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMDGKTLGISQRAYTESIIKKFGQENAKPSLMPLDPSLH-LIKDDGPQTKEDKAKMKSRPYRSLIGSLMYLACETRPDIAIVVAKLSRFLENPGEAHWTAGIKVVRYLLKTKDVGITYNGL-LGTKLTAYSDADWAGNRDDRRSVSGVMLMMCGAPVVWRSTFQK 416          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A6A3RIG2_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=35 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RIG2_9STRA)

HSP 1 Score: 222 bits (566), Expect = 6.710e-61
Identity = 136/391 (34.78%), Postives = 221/391 (56.52%), Query Frame = 1
Query:    1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEF---------PGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVK--KGSKIPARSGVPPFLKADEPRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQE 1140
            E+ S++ N  +  V +P  +  +G + ++     + G+V +YK RLVA+G+ +  G+ Y E YS      SI   LA  +A+  E+   D D AFL   ++EE+Y+E+PE  +E            +V  L +++YGL QA + WN      + ++GF+ A AD CV+ +  +GE E +V +++DD+L  +++KT I      + +KF++K LG +R+ +G  I  + + R L I +  Y E +++ F  +  K    P   GV    KADEP+  E+K +M++ PY   VG+LM  A  TRP+I+ +V  ++RF +NPG+    A +K+++YLL TK+ GI Y G      +EAY+D D+  + D RRSVSG +LML    + W S  Q+
Sbjct:  824 ELESLIANKTWMLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSILAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLRELLELAEAEGEDAIVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRSRFILGIEIDYDMERRTLGISQKAYTESIIKKFAQENVKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKRWDAGIKVVRYLLKTKDVGIVYDGLLVAQ-LEAYSDEDWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQK 1211          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A438JMN5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JMN5_VITVI)

HSP 1 Score: 213 bits (543), Expect = 7.440e-61
Identity = 133/387 (34.37%), Postives = 216/387 (55.81%), Query Frame = 1
Query:    1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEFPG--VVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVKKGSKIPARSGVPPFLKADE------PRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQ 1137
            E++SM  N V+  +  P +   VG K ++K      G +E++K RLVA+GF + EG+ Y + +S      S+ + +A  A  D EL   D   AFL  ++DE++Y+E PE + +     +V +L K+IYGL QA + W  KF + +T+ GFK+   D C++ KV  G   + +++++DDIL  +     +      L + F +  +G+A Y +   I  +     L + +  Y++ ++E F+++  S     SG+ P LK D+      PRN  E+E+M+  PY  AVG+LM   + TRP+I+ +V  + R+  +PG  + KA  K+M+YL  TK++ +TY  +   L +  Y+DSD+G  LD+ +S SG V MLA G ISW S  Q
Sbjct:   16 ELKSMAHNGVWDLIELPNNCKPVGCKWVFKTKRDAKGNIERFKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENILDQCIYLKV-SGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVISIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCS-----SGIAPILKGDKLSKMQCPRNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQ 395          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA)

HSP 1 Score: 220 bits (560), Expect = 9.650e-61
Identity = 135/391 (34.53%), Postives = 223/391 (57.03%), Query Frame = 1
Query:    1 EMRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEF---------PGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA*ADLCVFRKVVDGETEVVVVVHLDDILAHAKKKTTIDIFVPELRQKFKLKGLGDARYSMGCHITSNHKTRELKIDRYLYVELMVENFDVK--KGSKIPARSGVPPFLKADEPRNPEEKEEMRNFPY*EAVGTLMQTASMTRPNIASSVRAVARFFKNPGQAYKKAVMKIMQYLLHTKNWGITYGGQGCGLCIEAYTDSDFGVSLDTRRSVSGAVLMLAKGEISWYSRMQE 1140
            E++S++ N  +K V +P  +  +G + ++     + G+V +YK RLVA+G+ +  G++Y E YS      SI   LA  +A+  E+   D D AFL   ++EE+Y+E+ E  +E            VV  L +++YGL QA + WN      + ++GF+ A  D CV+ +  +GE E +V +++DD+L  +++K  I      + +KF++K +G AR+ +G  I  N + R L I +  Y E +++    +  K    P   GV    KADEP+  E+K +M++ PY   VG+LM  +  TRP+I+ +V  ++RF +NPG+ +  A +K+++YLL TK+ GI Y G   G  +EAY+D+D+  + D RRSVSG +LML    + W S  Q+
Sbjct:  397 ELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKDRLVAKGYSQRHGINYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQK 784          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3Q908_9STRA4.310e-6535.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3V8M8_9STRA1.180e-6434.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HUL4_VITVI4.850e-6335.66Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3DSS8_9STRA1.580e-6234.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3LA50_TRIPR3.740e-6236.18Putative retrotransposon Ty1-copia subclass protei... [more]
A0A6A3YGI7_9STRA6.460e-6234.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A225UK66_9STRA9.430e-6234.86Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A6A3RIG2_9STRA6.710e-6134.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JMN5_VITVI7.440e-6134.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0QQ26_9STRA9.650e-6134.53Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8573contigH-elongata_contig8573:7128..8267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score102.8
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size1140
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8573.16158.1prot_H-elongata_contig8573.16158.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8573 7131..7586 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931260.7735646-UTR-H-elongata_contig8573:7127..71301622931260.7735646-UTR-H-elongata_contig8573:7127..7130Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8573 7128..7130 +
1691679763.9205194-UTR-H-elongata_contig8573:7127..71301691679763.9205194-UTR-H-elongata_contig8573:7127..7130Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8573 7128..7130 +
1622931260.8071158-UTR-H-elongata_contig8573:7586..82671622931260.8071158-UTR-H-elongata_contig8573:7586..8267Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8573 7587..8267 +
1691679763.95237-UTR-H-elongata_contig8573:7586..82671691679763.95237-UTR-H-elongata_contig8573:7586..8267Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8573 7587..8267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931260.7870746-CDS-H-elongata_contig8573:7130..75861622931260.7870746-CDS-H-elongata_contig8573:7130..7586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8573 7131..7586 +
1691679763.940267-CDS-H-elongata_contig8573:7130..75861691679763.940267-CDS-H-elongata_contig8573:7130..7586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8573 7131..7586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8573.16158.1

>prot_H-elongata_contig8573.16158.1 ID=prot_H-elongata_contig8573.16158.1|Name=mRNA_H-elongata_contig8573.16158.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
MRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGF
CRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDID
EELYIEIPEEYQEFPGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQ
A*
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mRNA from alignment at H-elongata_contig8573:7128..8267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8573.16158.1 ID=mRNA_H-elongata_contig8573.16158.1|Name=mRNA_H-elongata_contig8573.16158.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1140bp|location=Sequence derived from alignment at H-elongata_contig8573:7128..8267+ (Himanthalia elongata Himel1 dioecious)
GAGATGCGTAGCATGGTCGACAACTGTGTCTATAAGCAAGTGGCTCGGCC GAAGGATAAGCTCGTGGTTGGCACAAAAATGCTTTACAAGCGAAATGCCG GACAGGACGGCAAGGTAGAGAAGTACAAGTGTCGACTTGTCGCTCAAGGG TTCTGTCGGTTTGAAGGTATGCACTACACGGAAATGTACTCGTCCACGCC AGCGACCGCGTCAATCTGGATGGCTTTAGCTACGACAGCGGCCAAGGACG GAGAGCTGCGTCATTTCGACGCGGACCAGGCATTCTTGAAGATGGACATC GATGAGGAATTGTACATTGAGATCCCCGAGGAGTACCAGGAGTTTCCGGG GGTAGTGAGACGGCTGAACAAGGCTATATATGGACTCATACAGGCGGGGA AGTGCTGGAACAATAAGTTCTGCGACGATATGACGGCGATTGGATTCAAG CAGGCATAGGCGGATCTGTGCGTGTTCCGTAAGGTCGTTGACGGAGAGAC GGAAGTGGTGGTGGTCGTACACTTGGACGACATTCTTGCTCACGCCAAAA AAAAAACGACGATTGATATATTCGTACCTGAGCTTAGACAAAAGTTCAAA TTGAAGGGCCTGGGCGACGCTAGGTACTCCATGGGCTGTCACATCACTAG CAACCACAAGACGCGCGAGTTAAAGATCGATCGATACTTGTACGTAGAGT TGATGGTGGAAAATTTCGATGTCAAGAAGGGAAGCAAGATACCGGCAAGG TCGGGGGTGCCACCATTCTTAAAGGCAGACGAGCCACGGAACCCGGAGGA GAAGGAGGAAATGAGGAATTTTCCATACTAGGAGGCAGTGGGGACACTTA TGCAGACGGCGTCGATGACACGGCCGAACATTGCGAGCTCAGTACGCGCT GTGGCCAGGTTTTTCAAAAACCCGGGGCAGGCGTATAAGAAGGCGGTGAT GAAGATCATGCAGTATCTTCTTCACACGAAGAATTGGGGGATTACATACG GTGGACAGGGCTGTGGACTTTGCATTGAGGCATACACGGACTCAGATTTT GGAGTCTCCCTGGATACGAGACGATCGGTGTCGGGTGCGGTGTTGATGCT GGCCAAAGGGGAGATCAGCTGGTATTCAAGGATGCAAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig8573:7128..8267+

>mRNA_H-elongata_contig8573.16158.1 ID=mRNA_H-elongata_contig8573.16158.1|Name=mRNA_H-elongata_contig8573.16158.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig8573:7128..8267+ (Himanthalia elongata Himel1 dioecious)
ATGCGTAGCATGGTCGACAACTGTGTCTATAAGCAAGTGGCTCGGCCGAA
GGATAAGCTCGTGGTTGGCACAAAAATGCTTTACAAGCGAAATGCCGGAC
AGGACGGCAAGGTAGAGAAGTACAAGTGTCGACTTGTCGCTCAAGGGTTC
TGTCGGTTTGAAGGTATGCACTACACGGAAATGTACTCGTCCACGCCAGC
GACCGCGTCAATCTGGATGGCTTTAGCTACGACAGCGGCCAAGGACGGAG
AGCTGCGTCATTTCGACGCGGACCAGGCATTCTTGAAGATGGACATCGAT
GAGGAATTGTACATTGAGATCCCCGAGGAGTACCAGGAGTTTCCGGGGGT
AGTGAGACGGCTGAACAAGGCTATATATGGACTCATACAGGCGGGGAAGT
GCTGGAACAATAAGTTCTGCGACGATATGACGGCGATTGGATTCAAGCAG
GCATAGATGCGTAGCATGGTCGACAACTGTGTCTATAAGCAAGTGGCTCG
GCCGAAGGATAAGCTCGTGGTTGGCACAAAAATGCTTTACAAGCGAAATG
CCGGACAGGACGGCAAGGTAGAGAAGTACAAGTGTCGACTTGTCGCTCAA
GGGTTCTGTCGGTTTGAAGGTATGCACTACACGGAAATGTACTCGTCCAC
GCCAGCGACCGCGTCAATCTGGATGGCTTTAGCTACGACAGCGGCCAAGG
ACGGAGAGCTGCGTCATTTCGACGCGGACCAGGCATTCTTGAAGATGGAC
ATCGATGAGGAATTGTACATTGAGATCCCCGAGGAGTACCAGGAGTTTCC
GGGGGTAGTGAGACGGCTGAACAAGGCTATATATGGACTCATACAGGCGG
GGAAGTGCTGGAACAATAAGTTCTGCGACGATATGACGGCGATTGGATTC
AAGCAGGCATAG
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