mRNA_H-elongata_contig85723.16156.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig85723.16156.1 vs. uniprot
Match: A0A6H5K1Z7_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Z7_9PHAE) HSP 1 Score: 259 bits (661), Expect = 1.100e-77 Identity = 128/134 (95.52%), Postives = 132/134 (98.51%), Query Frame = 1
Query: 1 RSQIRRLRQHISRRLGNLRLTVPRNQVFEYSFHQLRVRNAEEMRGRLHITFQNEDGIDAGGLTREWYSILARDIFNQNYALFIAAADGATFQPNPVSHVNSEHLAYFKFVGRIVGKAIAEGQALDAHFTQSFYK 402
RSQ+RRLRQH +RR G+LRLTVPRNQVFEYSFHQLRVRNAEEMRGRLHITFQNEDGIDAGGLTREWYSILARDIFNQNYALFIAAADGATFQPNPVSHVNSEHLAYFKFVGRIVGKAIA+GQALDAHFTQSFYK
Sbjct: 886 RSQLRRLRQHSTRRYGSLRLTVPRNQVFEYSFHQLRVRNAEEMRGRLHITFQNEDGIDAGGLTREWYSILARDIFNQNYALFIAAADGATFQPNPVSHVNSEHLAYFKFVGRIVGKAIADGQALDAHFTQSFYK 1019
BLAST of mRNA_H-elongata_contig85723.16156.1 vs. uniprot
Match: D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI) HSP 1 Score: 257 bits (656), Expect = 8.020e-77 Identity = 127/134 (94.78%), Postives = 132/134 (98.51%), Query Frame = 1
Query: 1 RSQIRRLRQHISRRLGNLRLTVPRNQVFEYSFHQLRVRNAEEMRGRLHITFQNEDGIDAGGLTREWYSILARDIFNQNYALFIAAADGATFQPNPVSHVNSEHLAYFKFVGRIVGKAIAEGQALDAHFTQSFYK 402
RSQ+RRLRQH +RR G+LRLTVPR+QVFEYSFHQLRVRNAEEMRGRLHITFQNEDGIDAGGLTREWYSILARDIFNQNYALFIAAADGATFQPNPVSHVNSEHLAYFKFVGRIVGKAIA+GQALDAHFTQSFYK
Sbjct: 1133 RSQLRRLRQHSTRRYGSLRLTVPRSQVFEYSFHQLRVRNAEEMRGRLHITFQNEDGIDAGGLTREWYSILARDIFNQNYALFIAAADGATFQPNPVSHVNSEHLAYFKFVGRIVGKAIADGQALDAHFTQSFYK 1266
BLAST of mRNA_H-elongata_contig85723.16156.1 vs. uniprot
Match: A0A835YKA1_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKA1_9STRA) HSP 1 Score: 214 bits (546), Expect = 9.780e-66 Identity = 105/134 (78.36%), Postives = 118/134 (88.06%), Query Frame = 1
Query: 1 RSQIRRLRQHISRRLGNLRLTVPRNQVFEYSFHQLRVRNAEEMRGRLHITFQNEDGIDAGGLTREWYSILARDIFNQNYALFIAAADGATFQPNPVSHVNSEHLAYFKFVGRIVGKAIAEGQALDAHFTQSFYK 402
R+Q+RRLRQ +RR G+LRL+VPR QVFEYSFHQLR+R AEEMRGRLHITF E+GIDAGGLTREWYSILAR+IFN +YALF A ADG TFQPN +S +N +HLAYFKFVGRIVGKAIA+GQ LDAHFT SFYK
Sbjct: 73 RAQLRRLRQQSTRRYGSLRLSVPRAQVFEYSFHQLRIRTAEEMRGRLHITFDGEEGIDAGGLTREWYSILAREIFNADYALFKAGADGVTFQPNALSTINPDHLAYFKFVGRIVGKAIADGQLLDAHFTHSFYK 206
BLAST of mRNA_H-elongata_contig85723.16156.1 vs. uniprot
Match: A0A7S3UVA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVA8_HETAK) HSP 1 Score: 200 bits (508), Expect = 3.440e-60 Identity = 101/140 (72.14%), Postives = 118/140 (84.29%), Query Frame = 1
Query: 1 RSQIRRLRQHISRRL------GNLRLTVPRNQVFEYSFHQLRVRNAEEMRGRLHITFQNEDGIDAGGLTREWYSILARDIFNQNYALFIAAADGATFQPNPVSHVNSEHLAYFKFVGRIVGKAIAEGQALDAHFTQSFYK 402
R+++RRLR +RR G LRL+V RNQVFE SFHQLR+R AEE+RG+L+I FQ E+GIDAGG+TREWYS+LAR+IFN NYALF+AAADGATFQPNP SH N +HLAYFKFVGRIVGKAIA+GQ LDAHFT SF+K
Sbjct: 53 RARLRRLRGQAARRHHRHGGGGTLRLSVRRNQVFEDSFHQLRMRTAEELRGKLNIAFQGEEGIDAGGVTREWYSVLAREIFNANYALFVAAADGATFQPNPHSHYNPDHLAYFKFVGRIVGKAIADGQLLDAHFTLSFHK 192
BLAST of mRNA_H-elongata_contig85723.16156.1 vs. uniprot
Match: A0A1E7FE71_9STRA (HUWE1 protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE71_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.990e-55 Identity = 87/132 (65.91%), Postives = 112/132 (84.85%), Query Frame = 1
Query: 7 QIRRLRQHISRRLGNLRLTVPRNQVFEYSFHQLRVRNAEEMRGRLHITFQNEDGIDAGGLTREWYSILARDIFNQNYALFIAAADGATFQPNPVSHVNSEHLAYFKFVGRIVGKAIAEGQALDAHFTQSFYK 402
Q+RRLRQH +RR G++RL + R+QVF ++HQL +R+AEEMRGRLHITF+NE G+DAGGL+RE++ ILA++IFN NYALF + DG TFQPNP S VN +HL+YF+FVGRIVGKA+A+G LD+HFT+S YK
Sbjct: 15 QVRRLRQHANRRYGSIRLHIRRDQVFFDAYHQLSLRSAEEMRGRLHITFRNEQGVDAGGLSREFFGILAKEIFNPNYALFTSTEDGCTFQPNPSSSVNPDHLSYFRFVGRIVGKAVADGYLLDSHFTRSLYK 146
BLAST of mRNA_H-elongata_contig85723.16156.1 vs. uniprot
Match: B7G081_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G081_PHATC) HSP 1 Score: 185 bits (470), Expect = 5.070e-55 Identity = 87/133 (65.41%), Postives = 113/133 (84.96%), Query Frame = 1
Query: 4 SQIRRLRQHISRRLGNLRLTVPRNQVFEYSFHQLRVRNAEEMRGRLHITFQNEDGIDAGGLTREWYSILARDIFNQNYALFIAAADGATFQPNPVSHVNSEHLAYFKFVGRIVGKAIAEGQALDAHFTQSFYK 402
+Q+RRLRQ SRR G+LRL + R VFE ++HQLR+RNA+EMRGRL ITF+NE+G+DAGGL+RE+++ILA++IFN NYALF + DG TFQPNP S +N +HL+YF+FVGRIVGKA+++G LDAHFT+S YK
Sbjct: 12 TQMRRLRQQASRRHGSLRLQIRRKYVFEDAYHQLRLRNADEMRGRLQITFRNEEGVDAGGLSREFFAILAKEIFNPNYALFTSTEDGCTFQPNPNSSINPDHLSYFRFVGRIVGKAVSDGYLLDAHFTRSLYK 144
BLAST of mRNA_H-elongata_contig85723.16156.1 vs. uniprot
Match: A0A7S0C7I7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C7I7_9STRA) HSP 1 Score: 190 bits (483), Expect = 1.190e-53 Identity = 88/133 (66.17%), Postives = 112/133 (84.21%), Query Frame = 1
Query: 4 SQIRRLRQHISRRLGNLRLTVPRNQVFEYSFHQLRVRNAEEMRGRLHITFQNEDGIDAGGLTREWYSILARDIFNQNYALFIAAADGATFQPNPVSHVNSEHLAYFKFVGRIVGKAIAEGQALDAHFTQSFYK 402
+Q+RRLRQH +RR G+LRL + R VFE +FHQ+R RNA+EMRGRLHITF+NE+G+DAGGL+RE++ ILA+++FN NYALF + DG TFQPNP S +N EHL+YF+FVGRIVGKA+ +G LDAHFT+S YK
Sbjct: 591 TQVRRLRQHANRRAGSLRLNIRRKHVFEDAFHQIRQRNADEMRGRLHITFRNEEGVDAGGLSREFFGILAKEMFNPNYALFTSTEDGCTFQPNPNSSINPEHLSYFRFVGRIVGKAVVDGFLLDAHFTRSLYK 723
BLAST of mRNA_H-elongata_contig85723.16156.1 vs. uniprot
Match: A0A7S2Y5L7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5L7_9STRA) HSP 1 Score: 190 bits (482), Expect = 2.230e-53 Identity = 88/133 (66.17%), Postives = 113/133 (84.96%), Query Frame = 1
Query: 4 SQIRRLRQHISRRLGNLRLTVPRNQVFEYSFHQLRVRNAEEMRGRLHITFQNEDGIDAGGLTREWYSILARDIFNQNYALFIAAADGATFQPNPVSHVNSEHLAYFKFVGRIVGKAIAEGQALDAHFTQSFYK 402
+Q+RRLRQH SRR GN+RL + R VFE ++HQLR+RNA+EMRGRLHITF++EDGIDAGGL+RE+++IL +++FN NYALF + DG TFQPNP S +N +HL+YF+F GRIVGKA+A+G LDAHFT+S YK
Sbjct: 1162 TQVRRLRQHASRRHGNIRLHINRKNVFEEAYHQLRLRNADEMRGRLHITFRDEDGIDAGGLSREFFAILGKEMFNPNYALFTSTEDGCTFQPNPNSAINPDHLSYFRFCGRIVGKAVADGYLLDAHFTRSLYK 1294
BLAST of mRNA_H-elongata_contig85723.16156.1 vs. uniprot
Match: A0A7S4S0Y2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S0Y2_9STRA) HSP 1 Score: 189 bits (480), Expect = 4.230e-53 Identity = 88/133 (66.17%), Postives = 113/133 (84.96%), Query Frame = 1
Query: 4 SQIRRLRQHISRRLGNLRLTVPRNQVFEYSFHQLRVRNAEEMRGRLHITFQNEDGIDAGGLTREWYSILARDIFNQNYALFIAAADGATFQPNPVSHVNSEHLAYFKFVGRIVGKAIAEGQALDAHFTQSFYK 402
+Q+RRLRQH SRR G+LRLT+ R VFE +FH+LR+R A+EMRGRLHITF NE+G+DAGGL+RE++ ILA+++FN NYALF + DG TFQPNP S++N +HL+YF+FVGRIVGKA+ +G LDAHFT+S YK
Sbjct: 2410 TQVRRLRQHASRRHGSLRLTIRRKHVFEDAFHRLRLRTADEMRGRLHITFVNEEGVDAGGLSREFFGILAKEMFNPNYALFTSTEDGCTFQPNPNSNINPDHLSYFRFVGRIVGKAVVDGFLLDAHFTRSLYK 2542
BLAST of mRNA_H-elongata_contig85723.16156.1 vs. uniprot
Match: A0A7S2S5N9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5N9_9STRA) HSP 1 Score: 179 bits (453), Expect = 1.200e-52 Identity = 84/126 (66.67%), Postives = 102/126 (80.95%), Query Frame = 1
Query: 25 QHISRRLGNLRLTVPRNQVFEYSFHQLRVRNAEEMRGRLHITFQNEDGIDAGGLTREWYSILARDIFNQNYALFIAAADGATFQPNPVSHVNSEHLAYFKFVGRIVGKAIAEGQALDAHFTQSFYK 402
Q SRR G LRL+V R V + SF +R+R+A+E+RGRLHI FQ E+GIDAGGLTREWYS+LA+ IFN Y LF +DG+TFQPNP+S++N +HL YFKFVGRIVGKAIA+GQ LD HFT+SFYK
Sbjct: 1 QSASRRYGALRLSVRREMVMDDSFEWIRMRSADELRGRLHIAFQGEEGIDAGGLTREWYSVLAKQIFNPGYCLFTPTSDGSTFQPNPLSNINHQHLEYFKFVGRIVGKAIADGQILDVHFTRSFYK 126 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85723.16156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig85723.16156.1 >prot_H-elongata_contig85723.16156.1 ID=prot_H-elongata_contig85723.16156.1|Name=mRNA_H-elongata_contig85723.16156.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp RSQIRRLRQHISRRLGNLRLTVPRNQVFEYSFHQLRVRNAEEMRGRLHITback to top mRNA from alignment at H-elongata_contig85723:1114..2462+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig85723.16156.1 ID=mRNA_H-elongata_contig85723.16156.1|Name=mRNA_H-elongata_contig85723.16156.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1349bp|location=Sequence derived from alignment at H-elongata_contig85723:1114..2462+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig85723:1114..2462+ >mRNA_H-elongata_contig85723.16156.1 ID=mRNA_H-elongata_contig85723.16156.1|Name=mRNA_H-elongata_contig85723.16156.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig85723:1114..2462+ (Himanthalia elongata Himel1 dioecious)back to top |