mRNA_H-elongata_contig85705.16154.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85705.16154.1
Unique NamemRNA_H-elongata_contig85705.16154.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig85705.16154.1 vs. uniprot
Match: D7G157_ECTSI (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G157_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 5.390e-35
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 1
Query:    1 GSIVYYEIPGQIDLPKLKEKGLDMDALCRHYIYITEFLWNELDKNPEAKLLTCMDMKGTSLSMFVGEVK 207
            GS+VYYEIPG+IDL KL+E GLDMD+LCRHY+YITEFLW ELDKNPE KL TCMDMKGT LSMF GEVK
Sbjct:  125 GSVVYYEIPGKIDLNKLRENGLDMDSLCRHYVYITEFLWKELDKNPEGKLFTCMDMKGTKLSMFAGEVK 193          
BLAST of mRNA_H-elongata_contig85705.16154.1 vs. uniprot
Match: A0A835Z260_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z260_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.890e-23
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 GSIVYYEIPGQIDLPKLKEKGLDMDALCRHYIYITEFLWNELDKNPEAKLLTCMDMKGTSLSMFVGEVKVGHKEYM 228
            G +VYYEIPG+ DL KL+E G+D+D L RHYIYITEF+W  LD   E+KLL+ MD++G SL+ F GEV+    EYM
Sbjct:  104 GCLVYYEIPGETDLKKLRENGVDIDQLIRHYIYITEFIWRRLDTGEESKLLSIMDLRGVSLAQFAGEVR----EYM 175          
BLAST of mRNA_H-elongata_contig85705.16154.1 vs. uniprot
Match: A0A1V9ZL35_9STRA (SEC14 cytosolic factor n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZL35_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.080e-12
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 GSIVYYEIPGQIDLPKLKEKGLDMDALCRHYIYITEFLWNELDKNPEAKLLTCMDMKGTSLSMFVGEV 204
            G+ VYYE  G+IDL +LK  GL++D L RHY+YITE+LW EL+ +   + ++ +D +G       GEV
Sbjct:  515 GNCVYYEKLGKIDLKRLKGAGLNLDQLLRHYMYITEYLWLELEPSDTGRTISVLDAEGVGFYDLTGEV 582          
BLAST of mRNA_H-elongata_contig85705.16154.1 vs. uniprot
Match: A0A7S2U9B8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9B8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.030e-12
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 GSIVYYEIPGQIDLPKLKEKGLDMDALCRHYIYITEFLWNELDKNPEAKLLTCMDMKGTSLSMFVGEV 204
            G +VYYE P +++L  LKE G+++D L RHY ++TEF W  +D +  A+    +D++G  L  F GEV
Sbjct:  181 GEVVYYETPAKMNLKVLKEGGVNLDILLRHYAFVTEFSWQHIDTSETARSTYVIDLQGIKLMDFAGEV 248          
BLAST of mRNA_H-elongata_contig85705.16154.1 vs. uniprot
Match: A0A7S1UKD6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKD6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.600e-11
Identity = 28/69 (40.58%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 GSIVYYEIPGQIDLPKLKEKGLDMDALCRHYIYITEFLWNELDKNPEAKLLTCMDMKGTSLSMFVGEVK 207
            G +VYYE  G IDL  L+++GL +D L RHY++ TEF+W         ++LT  D++G ++S   G+ K
Sbjct:  298 GDVVYYEQVGNIDLAALRDRGLSIDLLVRHYLFTTEFMWRMTHPTTGGRVLTIFDVEGVAISDLGGDAK 366          
BLAST of mRNA_H-elongata_contig85705.16154.1 vs. uniprot
Match: A0A7S2SMN2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMN2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.700e-10
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 GSIVYYEIPGQIDLPKL-KEKGLDMDALCRHYIYITEFLWNELDKNPEAKLLTCMDMKGTSLSMFVGE 201
            GS VY E PG   +P L K+ G+ M+A+ RHY +I+E+LWN LD+  + KL++  D+ G  +   VG+
Sbjct:   20 GSFVYVERPGLASIPALLKKPGVSMEAVVRHYTFISEYLWNWLDRRQDGKLVSVWDVTGVGMHDLVGD 87          
BLAST of mRNA_H-elongata_contig85705.16154.1 vs. uniprot
Match: A0A1E7FMD6_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMD6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.910e-10
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 GSIVYYEIPGQIDLPKLKEKGLDMDALCRHYIYITEFLWNELDKNPEAKLLTCMDMKGTSLSMFVGE 201
            G  V+YE P + DL KLK  G+ + +L RHY  +TEF W  L+ N  A+ +T +D++G  +  FVGE
Sbjct:  334 GEPVFYEQPPKTDLQKLKNGGVTLISLVRHYTMVTEFQWQFLESNDFARSITVLDLEGIRMMDFVGE 400          
BLAST of mRNA_H-elongata_contig85705.16154.1 vs. uniprot
Match: B8CAC2_THAPS (Phosphatidylinositol/phosphatidylcholine transfer protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAC2_THAPS)

HSP 1 Score: 60.1 bits (144), Expect = 9.170e-9
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   10 VYYEIPGQIDLPKLKEKGLDMDALCRHYIYITEFLWNELDKN---PEAKLLTCMDMKGTSLSMFVGEV 204
            VYYE P +I+L  LK+ GL ++ L RHY  ITEF+W+ +  +   P ++ +T +D+ G  +  FVG+V
Sbjct:  156 VYYESPAKINLEALKQNGLSLENLIRHYALITEFMWSYVSPHQHGPMSRGITVIDLDGMRMRDFVGDV 223          
BLAST of mRNA_H-elongata_contig85705.16154.1 vs. uniprot
Match: A0A6H5K979_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K979_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.010e-8
Identity = 25/68 (36.76%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 GSIVYYEIPGQIDLPKLKEKGLDMDALCRHYIYITEFLWNELDKNPE-AKLLTCMDMKGTSLSMFVGE 201
            G  V+ E+PG+IDLP ++  G+  +AL RHY+++TE++W  L+ + E  + +T +D++G  +    GE
Sbjct:  361 GCPVWIELPGRIDLPAIRSAGVSPEALQRHYVFVTEYMWGVLEPDFENGQAVTVLDVQGLGMRDLAGE 428          
BLAST of mRNA_H-elongata_contig85705.16154.1 vs. uniprot
Match: D8LBN1_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN1_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.020e-8
Identity = 25/68 (36.76%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 GSIVYYEIPGQIDLPKLKEKGLDMDALCRHYIYITEFLWNELDKNPE-AKLLTCMDMKGTSLSMFVGE 201
            G  V+ E+PG+IDLP ++  G+  +AL RHY+++TE++W  L+ + E  + +T +D++G  +    GE
Sbjct:  363 GCPVWIELPGRIDLPAIRSAGVSPEALQRHYVFVTEYMWGVLEPDFENGQAVTVLDVQGLGMRDLAGE 430          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85705.16154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G157_ECTSI5.390e-3582.61CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z260_9STRA1.890e-2359.21CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A1V9ZL35_9STRA4.080e-1245.59SEC14 cytosolic factor n=1 Tax=Achlya hypogyna Tax... [more]
A0A7S2U9B8_9STRA5.030e-1242.65Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1UKD6_9STRA3.600e-1140.58Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2SMN2_9STRA1.700e-1042.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1E7FMD6_9STRA5.910e-1043.28CRAL-TRIO domain-containing protein n=1 Tax=Fragil... [more]
B8CAC2_THAPS9.170e-941.18Phosphatidylinositol/phosphatidylcholine transfer ... [more]
A0A6H5K979_9PHAE1.010e-836.76CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D8LBN1_ECTSI1.020e-836.76CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85705contigH-elongata_contig85705:1751..2621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue5.6e-28
Seed eggNOG ortholog2880.D7G157
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-08_005340.1
Exons2
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931260.5098324-CDS-H-elongata_contig85705:1750..18701622931260.5098324-CDS-H-elongata_contig85705:1750..1870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85705 1751..1870 +
1691679763.7815309-CDS-H-elongata_contig85705:1750..18701691679763.7815309-CDS-H-elongata_contig85705:1750..1870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85705 1751..1870 +
1622931260.5236757-CDS-H-elongata_contig85705:2504..26211622931260.5236757-CDS-H-elongata_contig85705:2504..2621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85705 2505..2621 +
1691679763.8000135-CDS-H-elongata_contig85705:2504..26211691679763.8000135-CDS-H-elongata_contig85705:2504..2621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85705 2505..2621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85705.16154.1prot_H-elongata_contig85705.16154.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85705 1751..2621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85705.16154.1

>prot_H-elongata_contig85705.16154.1 ID=prot_H-elongata_contig85705.16154.1|Name=mRNA_H-elongata_contig85705.16154.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
GSIVYYEIPGQIDLPKLKEKGLDMDALCRHYIYITEFLWNELDKNPEAKL
LTCMDMKGTSLSMFVGEVKVGHKEYMRI*
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mRNA from alignment at H-elongata_contig85705:1751..2621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85705.16154.1 ID=mRNA_H-elongata_contig85705.16154.1|Name=mRNA_H-elongata_contig85705.16154.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=871bp|location=Sequence derived from alignment at H-elongata_contig85705:1751..2621+ (Himanthalia elongata Himel1 dioecious)
GGGAGCATCGTGTATTACGAGATCCCTGGACAAATCGACCTGCCCAAGCT GAAGGAGAAAGGCCTCGACATGGACGCGCTGTGCCGCCACTACATTTACA TTACGGAGTTTTTGTGGAACGTGAGGCGCCGCTGCCCTGGGAAGGGACGT CAAGCCTAGCCTTGCCTTGCTTTGCCTTGCCTTGCTTTGCTTTGCCTTGT CTTGCTTTGCTTTGCCTTGTCTTGCTTTGCTTTGCTTTGCCTTGCCTTGC CCCGCAATCACAGTTCCTTTTTTTTGCGTGACATTTAGCGTCGGGCCTAT CCCCCGTTGTAGCGAAAACACCTGTCGACGATGCGCGCGTCTGACGCCTC TCACTCGCTGGATCACAAGAGCTGCGAGCGTGGTCGATCGTGCGGCCCCT CTCGTTTCGGATTCCGAGTAGACGCCGGCCACGGCCTTAAGCGATCGGCG ACGGCGACGACACGAAGTCAACACGCAAGCCGTATCCGTTAGGGTACACG CGGCCGCCCTCGTTCGGTGCTTTCGGCGAGAGAGCACGGAGCGATGGAAT GGTTGCTTGAAGATCTTTCACGGCGACGCGTTGTGCTTGCGCCGCTGTCA CTTGCTTCTCTCTCGCTCTTTTCTGTGGTTACGCACATCCACGGAAACAA GAACGTTTCAATATATGTATATATATATATAATGGTGGTACACGCGTGAA CATTTCTATGTTGTTGATTTGAGCTCTGTTTATCTTATGTGTGTGTGTAT TCAGGAGTTGGACAAGAACCCCGAGGCGAAACTGCTAACGTGCATGGACA TGAAGGGGACCAGCCTGTCCATGTTTGTCGGAGAAGTCAAGGTGGGACAT AAAGAATACATGCGTATATAG
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Coding sequence (CDS) from alignment at H-elongata_contig85705:1751..2621+

>mRNA_H-elongata_contig85705.16154.1 ID=mRNA_H-elongata_contig85705.16154.1|Name=mRNA_H-elongata_contig85705.16154.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig85705:1751..2621+ (Himanthalia elongata Himel1 dioecious)
GGGAGCATCGTGTATTACGAGATCCCTGGACAAATCGACCTGCCCAAGCT
GAAGGAGAAAGGCCTCGACATGGACGCGCTGTGCCGCCACTACATTTACA
TTACGGAGTTTTTGTGGAACGGGAGCATCGTGTATTACGAGATCCCTGGA
CAAATCGACCTGCCCAAGCTGAAGGAGAAAGGCCTCGACATGGACGCGCT
GTGCCGCCACTACATTTACATTACGGAGTTTTTGTGGAACGAGTTGGACA
AGAACCCCGAGGCGAAACTGCTAACGTGCATGGACATGAAGGGGACCAGC
CTGTCCATGTTTGTCGGAGAAGTCAAGGTGGGACATAAAGAATACATGCG
TATATAGGAGTTGGACAAGAACCCCGAGGCGAAACTGCTAACGTGCATGG
ACATGAAGGGGACCAGCCTGTCCATGTTTGTCGGAGAAGTCAAGGTGGGA
CATAAAGAATACATGCGTATATAG
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